Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.65539 * 2 1 4 4 C 1.54590 * 110.99004 * 236.84308 * 2 1 3 5 5 N 1.48114 * 103.42598 * 204.37526 * 4 2 1 6 6 C 1.34774 * 127.03634 * 219.28725 * 5 4 2 7 7 O 1.21284 * 120.00066 * 179.68126 * 6 5 4 8 8 C 1.50696 * 119.99838 * 359.68189 * 6 5 4 9 9 C 1.53005 * 109.47353 * 180.02562 * 8 6 5 10 10 S 1.81399 * 109.47445 * 179.97438 * 9 8 6 11 11 C 1.81393 * 101.92117 * 179.97438 * 10 9 8 12 12 O 1.42096 * 108.57743 * 294.48510 * 10 9 8 13 13 O 1.42105 * 108.57596 * 65.51091 * 10 9 8 14 14 C 1.47492 * 105.93197 * 39.02333 * 5 4 2 15 15 C 1.54010 * 107.07978 * 334.77939 * 14 5 4 16 16 H 1.09003 * 110.32047 * 120.19769 * 15 14 5 17 17 C 1.53001 * 110.32438 * 242.31126 * 15 14 5 18 18 N 1.46501 * 109.47212 * 293.54571 * 17 15 14 19 19 C 1.36938 * 120.00008 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00093 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99753 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47031 * 90.00468 * 23 21 19 25 25 H 1.48505 * 109.47180 * 210.00170 * 23 21 19 26 26 H 1.48507 * 109.47341 * 330.00584 * 23 21 19 27 27 H 1.09004 * 109.47127 * 296.81192 * 1 2 3 28 28 H 1.08997 * 109.46861 * 56.80869 * 1 2 3 29 29 H 1.08999 * 109.46788 * 176.81038 * 1 2 3 30 30 H 1.09004 * 110.62045 * 85.85541 * 4 2 1 31 31 H 1.09002 * 110.54819 * 322.85506 * 4 2 1 32 32 H 1.09001 * 109.47328 * 60.00142 * 8 6 5 33 33 H 1.09004 * 109.47043 * 299.99952 * 8 6 5 34 34 H 1.09001 * 109.46962 * 59.99704 * 9 8 6 35 35 H 1.09004 * 109.46832 * 299.99868 * 9 8 6 36 36 H 1.09002 * 109.47608 * 60.00113 * 11 10 9 37 37 H 1.09002 * 109.47388 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47386 * 299.99782 * 11 10 9 39 39 H 1.08997 * 109.91119 * 94.14047 * 14 5 4 40 40 H 1.09000 * 109.91104 * 215.42312 * 14 5 4 41 41 H 1.08998 * 109.47199 * 53.54881 * 17 15 14 42 42 H 1.09000 * 109.46493 * 173.55121 * 17 15 14 43 43 H 0.97002 * 120.00126 * 0.02562 * 18 17 15 44 44 H 0.96999 * 120.00139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7894 -1.2083 5 7 3.4321 -1.2057 -0.7584 6 6 4.5593 -1.2406 -1.4964 7 8 5.6027 -1.6001 -0.9933 8 6 4.5233 -0.8329 -2.9467 9 6 5.9239 -0.9639 -3.5484 10 16 5.8804 -0.4739 -5.2944 11 6 7.6100 -0.7027 -5.7910 12 8 5.0775 -1.4055 -6.0061 13 8 5.5679 0.9104 -5.3684 14 6 3.2903 -1.5681 0.6642 15 6 2.0775 -0.7915 1.2101 16 1 1.3220 -1.4830 1.5834 17 6 2.5154 0.1660 2.3202 18 7 2.9825 -0.6057 3.4746 19 6 3.4277 0.0417 4.5962 20 1 3.4340 1.1212 4.6298 21 6 3.8698 -0.6894 5.6902 22 7 3.8616 -2.0049 5.6493 23 14 4.4763 0.1937 7.2203 24 1 3.3371 0.4196 8.1458 25 1 5.5057 -0.6366 7.8959 26 1 5.0683 1.5003 6.8359 27 1 -0.3633 0.4636 0.9172 28 1 -0.3633 0.5626 -0.8600 29 1 -0.3633 -1.0261 -0.0572 30 1 2.1525 -0.1480 -2.0870 31 1 1.4612 -1.6601 -1.4142 32 1 4.1891 0.2017 -3.0252 33 1 3.8334 -1.4797 -3.4889 34 1 6.2577 -1.9986 -3.4700 35 1 6.6141 -0.3174 -3.0063 36 1 7.8948 -1.7448 -5.6463 37 1 7.7243 -0.4378 -6.8422 38 1 8.2502 -0.0632 -5.1832 39 1 3.1178 -2.6402 0.7588 40 1 4.1895 -1.2844 1.2110 41 1 3.3238 0.7996 1.9555 42 1 1.6713 0.7885 2.6169 43 1 2.9772 -1.5752 3.4442 44 1 4.1708 -2.5159 6.4136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106327730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -96.237574 kcal Electronic energy + Delta-G solvation = -24854.710406 eV Core-core repulsion = 21127.802458 eV Total energy + Delta-G solvation = -3726.907949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17175 -38.07874 -37.35310 -36.41296 -34.66184 -33.48428 -32.81476 -31.41874 -30.07739 -29.15740 -26.65221 -26.09398 -24.40909 -23.09602 -21.17826 -19.86783 -19.29604 -19.23639 -17.72232 -17.08309 -16.75346 -16.54590 -16.08784 -16.02594 -15.58050 -14.93678 -14.65327 -14.22172 -13.73303 -13.72252 -13.62400 -13.49069 -13.32994 -12.96135 -12.84558 -12.68576 -12.60725 -12.45654 -12.36340 -11.94383 -11.93080 -11.73257 -11.47124 -11.44739 -11.10024 -11.00976 -10.87613 -10.62337 -10.51199 -10.33151 -9.99503 -9.87208 -9.66175 -8.88121 -8.62769 -6.92688 -5.76032 -3.05000 -0.44327 2.31013 2.57989 2.85899 3.27191 3.44278 3.49348 3.51256 3.61776 4.07270 4.31989 4.33361 4.38415 4.50345 4.57783 4.60521 4.81760 4.87310 5.02866 5.14424 5.21506 5.32031 5.35264 5.42013 5.45404 5.50783 5.59048 5.70832 5.77030 5.96714 6.06747 6.13305 6.18047 6.24853 6.40504 6.44595 6.71087 6.85129 7.55214 7.70412 8.12564 8.42565 9.53840 10.10514 10.45069 11.46820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002679 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.038007 B =10447.479868 C =11408.756512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.099 3.901 5 N -0.619 5.619 6 C 0.536 3.464 7 O -0.535 6.535 8 C -0.129 4.129 9 C -0.595 4.595 10 S 2.422 3.578 11 C -0.654 4.654 12 O -0.940 6.940 13 O -0.939 6.939 14 C 0.111 3.889 15 C -0.103 4.103 16 H 0.087 0.913 17 C 0.163 3.837 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 1.936 -24.594 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.024 4.024 5 N -0.352 5.352 6 C 0.323 3.677 7 O -0.411 6.411 8 C -0.170 4.170 9 C -0.724 4.724 10 S 2.604 3.396 11 C -0.804 4.804 12 O -0.937 6.937 13 O -0.936 6.936 14 C -0.011 4.011 15 C -0.122 4.122 16 H 0.105 0.895 17 C 0.035 3.965 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.022 2.148 -24.780 24.873 hybrid contribution 1.085 -0.202 1.438 1.813 sum 1.064 1.945 -23.342 23.447 Atomic orbital electron populations 1.21730 0.93717 1.02065 1.02217 1.22231 0.96160 0.99794 0.93872 0.89682 1.22660 0.83148 0.98824 0.97801 1.48820 1.08091 1.65833 1.12497 1.19774 0.82408 0.78167 0.87380 1.90739 1.29726 1.47741 1.72938 1.21318 0.95433 1.05191 0.95042 1.30160 1.04999 1.14131 1.23152 1.07790 0.78186 0.75594 0.78030 1.30238 1.25295 1.12098 1.12774 1.93606 1.65287 1.64755 1.70053 1.93613 1.82495 1.31680 1.85806 1.22212 1.00400 0.98839 0.79645 1.22397 0.96568 0.98002 0.95265 0.89462 1.20695 0.96156 0.92804 0.86833 1.42367 1.77181 1.05699 1.12448 1.19206 1.34705 0.91230 0.91974 0.91233 1.24740 1.02222 0.95475 0.98495 1.69654 1.53372 1.04144 1.30961 0.86187 0.78183 0.78456 0.83340 1.21726 1.21768 1.20774 0.91706 0.92591 0.92384 0.90260 0.90522 0.87252 0.87325 0.84123 0.84036 0.85162 0.85202 0.85112 0.91664 0.89042 0.96315 0.95990 0.78254 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.17 37.16 0.34 -0.96 16 2 C -0.10 -1.14 3.19 -88.93 -0.28 -1.42 16 3 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 4 C 0.10 0.99 6.38 -2.32 -0.01 0.97 16 5 N -0.62 -8.45 3.29 -169.98 -0.56 -9.01 16 6 C 0.54 7.50 7.89 -10.99 -0.09 7.42 16 7 O -0.53 -9.63 16.32 5.55 0.09 -9.54 16 8 C -0.13 -1.19 4.64 -27.88 -0.13 -1.32 16 9 C -0.60 -4.29 5.09 37.16 0.19 -4.10 16 10 S 2.42 15.71 5.36 -107.50 -0.58 15.13 16 11 C -0.65 -2.23 10.62 101.05 1.07 -1.15 16 12 O -0.94 -9.31 18.10 -57.83 -1.05 -10.35 16 13 O -0.94 -9.51 18.10 -57.83 -1.05 -10.56 16 14 C 0.11 1.81 6.31 -2.97 -0.02 1.79 16 15 C -0.10 -1.56 2.64 -89.24 -0.24 -1.80 16 16 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 17 C 0.16 3.20 5.35 -4.04 -0.02 3.18 16 18 N -0.73 -18.44 5.33 -59.91 -0.32 -18.76 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.08 0.60 7.23 -51.93 -0.38 0.23 16 31 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 35 H 0.14 0.94 8.10 -51.92 -0.42 0.52 16 36 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 37 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 38 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.85 7.48 -51.93 -0.39 1.47 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.12 7.51 -40.82 -0.31 9.81 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -39.33 374.79 -8.87 -48.20 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.33 Total: 4.09 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.57 Total: -4.80 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.15 Total: -55.45 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -2.00 Total: -30.45 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 15.71 SS G_CDS: -0.58 Total: 15.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.33 -8.87 -48.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106327730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.042 kcal (2) G-P(sol) polarization free energy of solvation -39.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds