Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.65539 * 2 1 4 4 C 1.54590 * 110.99004 * 236.84308 * 2 1 3 5 5 N 1.48114 * 103.42598 * 204.37526 * 4 2 1 6 6 C 1.34774 * 127.03634 * 219.28725 * 5 4 2 7 7 O 1.21284 * 120.00066 * 179.68126 * 6 5 4 8 8 C 1.50696 * 119.99838 * 359.68189 * 6 5 4 9 9 C 1.53005 * 109.47353 * 180.02562 * 8 6 5 10 10 S 1.81399 * 109.47445 * 179.97438 * 9 8 6 11 11 C 1.81393 * 101.92117 * 179.97438 * 10 9 8 12 12 O 1.42096 * 108.57743 * 294.48510 * 10 9 8 13 13 O 1.42105 * 108.57596 * 65.51091 * 10 9 8 14 14 C 1.47492 * 105.93197 * 39.02333 * 5 4 2 15 15 C 1.54010 * 107.07978 * 334.77939 * 14 5 4 16 16 H 1.09003 * 110.32047 * 120.19769 * 15 14 5 17 17 C 1.53001 * 110.32438 * 242.31126 * 15 14 5 18 18 N 1.46501 * 109.47212 * 293.54571 * 17 15 14 19 19 C 1.36938 * 120.00008 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99825 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00093 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99753 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47031 * 90.00468 * 23 21 19 25 25 H 1.48505 * 109.47180 * 210.00170 * 23 21 19 26 26 H 1.48507 * 109.47341 * 330.00584 * 23 21 19 27 27 H 1.09004 * 109.47127 * 296.81192 * 1 2 3 28 28 H 1.08997 * 109.46861 * 56.80869 * 1 2 3 29 29 H 1.08999 * 109.46788 * 176.81038 * 1 2 3 30 30 H 1.09004 * 110.62045 * 85.85541 * 4 2 1 31 31 H 1.09002 * 110.54819 * 322.85506 * 4 2 1 32 32 H 1.09001 * 109.47328 * 60.00142 * 8 6 5 33 33 H 1.09004 * 109.47043 * 299.99952 * 8 6 5 34 34 H 1.09001 * 109.46962 * 59.99704 * 9 8 6 35 35 H 1.09004 * 109.46832 * 299.99868 * 9 8 6 36 36 H 1.09002 * 109.47608 * 60.00113 * 11 10 9 37 37 H 1.09002 * 109.47388 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47386 * 299.99782 * 11 10 9 39 39 H 1.08997 * 109.91119 * 94.14047 * 14 5 4 40 40 H 1.09000 * 109.91104 * 215.42312 * 14 5 4 41 41 H 1.08998 * 109.47199 * 53.54881 * 17 15 14 42 42 H 1.09000 * 109.46493 * 173.55121 * 17 15 14 43 43 H 0.97002 * 120.00126 * 0.02562 * 18 17 15 44 44 H 0.96999 * 120.00139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7894 -1.2083 5 7 3.4321 -1.2057 -0.7584 6 6 4.5593 -1.2406 -1.4964 7 8 5.6027 -1.6001 -0.9933 8 6 4.5233 -0.8329 -2.9467 9 6 5.9239 -0.9639 -3.5484 10 16 5.8804 -0.4739 -5.2944 11 6 7.6100 -0.7027 -5.7910 12 8 5.0775 -1.4055 -6.0061 13 8 5.5679 0.9104 -5.3684 14 6 3.2903 -1.5681 0.6642 15 6 2.0775 -0.7915 1.2101 16 1 1.3220 -1.4830 1.5834 17 6 2.5154 0.1660 2.3202 18 7 2.9825 -0.6057 3.4746 19 6 3.4277 0.0417 4.5962 20 1 3.4340 1.1212 4.6298 21 6 3.8698 -0.6894 5.6902 22 7 3.8616 -2.0049 5.6493 23 14 4.4763 0.1937 7.2203 24 1 3.3371 0.4196 8.1458 25 1 5.5057 -0.6366 7.8959 26 1 5.0683 1.5003 6.8359 27 1 -0.3633 0.4636 0.9172 28 1 -0.3633 0.5626 -0.8600 29 1 -0.3633 -1.0261 -0.0572 30 1 2.1525 -0.1480 -2.0870 31 1 1.4612 -1.6601 -1.4142 32 1 4.1891 0.2017 -3.0252 33 1 3.8334 -1.4797 -3.4889 34 1 6.2577 -1.9986 -3.4700 35 1 6.6141 -0.3174 -3.0063 36 1 7.8948 -1.7448 -5.6463 37 1 7.7243 -0.4378 -6.8422 38 1 8.2502 -0.0632 -5.1832 39 1 3.1178 -2.6402 0.7588 40 1 4.1895 -1.2844 1.2110 41 1 3.3238 0.7996 1.9555 42 1 1.6713 0.7885 2.6169 43 1 2.9772 -1.5752 3.4442 44 1 4.1708 -2.5159 6.4136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106327730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = -127.309049 kcal Electronic energy + Delta-G solvation = -24856.057766 eV Core-core repulsion = 21127.802458 eV Total energy + Delta-G solvation = -3728.255309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 16.16 seconds Orbital eigenvalues (eV) -41.27666 -39.24740 -37.98865 -37.05355 -36.47211 -34.43692 -33.92073 -33.09167 -30.73623 -30.33658 -27.78195 -27.19629 -25.74467 -24.65167 -22.48440 -21.03459 -20.33427 -19.81201 -19.21610 -18.43397 -17.56444 -17.29167 -16.95544 -16.73049 -16.69267 -16.45543 -15.91214 -15.48414 -15.24278 -14.99165 -14.69598 -14.07936 -14.01401 -13.93600 -13.89922 -13.67980 -13.55795 -13.20509 -13.12923 -13.11836 -13.02359 -12.87056 -12.76262 -12.55092 -12.46018 -12.17224 -12.04288 -11.96879 -11.87874 -11.59005 -11.50122 -11.38413 -11.00824 -10.94345 -9.77749 -9.03550 -7.98112 -5.27247 -0.94093 1.44374 1.46633 1.51383 1.54965 1.84831 1.87623 2.53273 2.72312 3.13889 3.30855 3.35627 3.49995 3.53916 3.73827 3.82801 3.84272 4.14123 4.18100 4.23286 4.25540 4.32455 4.44808 4.52985 4.55139 4.57740 4.66076 4.77590 4.84883 4.90512 4.92158 5.00794 5.02302 5.10321 5.21447 5.26210 5.37941 5.45483 5.56511 6.24139 6.50502 7.04116 7.30340 8.05589 8.28740 9.25451 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002679 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.038007 B =10447.479868 C =11408.756512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.083 0.917 4 C 0.098 3.902 5 N -0.621 5.621 6 C 0.526 3.474 7 O -0.586 6.586 8 C -0.131 4.131 9 C -0.601 4.601 10 S 2.444 3.556 11 C -0.640 4.640 12 O -0.976 6.976 13 O -0.978 6.978 14 C 0.115 3.885 15 C -0.093 4.093 16 H 0.089 0.911 17 C 0.164 3.836 18 N -0.745 5.745 19 C -0.248 4.248 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.271 1.271 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.007 0.993 42 H 0.030 0.970 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 2.921 -26.717 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.023 4.023 5 N -0.354 5.354 6 C 0.316 3.684 7 O -0.467 6.467 8 C -0.171 4.171 9 C -0.729 4.729 10 S 2.630 3.370 11 C -0.793 4.793 12 O -0.973 6.973 13 O -0.975 6.975 14 C -0.008 4.008 15 C -0.113 4.113 16 H 0.108 0.892 17 C 0.037 3.963 18 N -0.388 5.388 19 C -0.379 4.379 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.196 1.196 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.206 0.794 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.585 3.184 -26.932 27.126 hybrid contribution 1.293 -0.498 2.053 2.477 sum 0.708 2.686 -24.879 25.034 Atomic orbital electron populations 1.21708 0.91627 1.03016 1.02863 1.22232 0.97741 0.99122 0.92144 0.89900 1.22960 0.81060 1.00127 0.98166 1.48963 1.09781 1.65438 1.11193 1.20718 0.81561 0.77044 0.89105 1.90707 1.31596 1.50030 1.74337 1.21472 0.97480 1.06670 0.91518 1.30234 1.04093 1.14871 1.23697 1.06966 0.79332 0.73869 0.76843 1.30105 1.21334 1.14064 1.13788 1.93555 1.67860 1.65313 1.70565 1.93559 1.84196 1.33660 1.86075 1.21925 0.98666 0.98754 0.81495 1.22274 0.96064 0.97512 0.95425 0.89232 1.20820 0.95567 0.93331 0.86547 1.42584 1.77261 1.05571 1.13374 1.19617 1.33767 0.91633 0.92915 0.90835 1.25589 1.03228 0.96257 1.01718 1.69813 1.54885 1.05598 1.31659 0.85130 0.77525 0.77531 0.79513 1.20961 1.22201 1.19616 0.92841 0.89939 0.91561 0.86776 0.88364 0.85367 0.84961 0.83386 0.83731 0.83125 0.83880 0.83287 0.92074 0.93933 0.97514 0.95245 0.79412 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 541. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.17 71.98 0.66 -1.45 16 2 C -0.09 -1.91 3.19 -9.70 -0.03 -1.94 16 3 H 0.08 1.77 7.87 -2.39 -0.02 1.76 16 4 C 0.10 1.69 6.38 86.61 0.55 2.24 16 5 N -0.62 -16.66 3.29 -810.07 -2.67 -19.33 16 6 C 0.53 14.65 7.89 87.66 0.69 15.34 16 7 O -0.59 -21.90 16.32 -3.04 -0.05 -21.95 16 8 C -0.13 -2.21 4.64 29.85 0.14 -2.07 16 9 C -0.60 -7.87 5.09 71.98 0.37 -7.50 16 10 S 2.44 27.50 5.36 -56.49 -0.30 27.20 16 11 C -0.64 -2.38 10.62 113.37 1.20 -1.18 16 12 O -0.98 -17.88 18.10 -127.37 -2.31 -20.19 16 13 O -0.98 -18.52 18.10 -127.37 -2.30 -20.83 16 14 C 0.11 3.91 6.31 86.53 0.55 4.46 16 15 C -0.09 -2.84 2.64 -9.90 -0.03 -2.87 16 16 H 0.09 2.70 7.85 -2.39 -0.02 2.69 16 17 C 0.16 6.58 5.35 86.38 0.46 7.04 16 18 N -0.75 -38.81 5.33 -343.45 -1.83 -40.64 16 19 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.69 13.06 21.65 0.28 -60.40 16 23 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.95 8.11 -2.39 -0.02 0.93 16 30 H 0.11 1.24 7.23 -2.38 -0.02 1.22 16 31 H 0.10 1.34 8.02 -2.39 -0.02 1.33 16 32 H 0.13 1.66 7.90 -2.39 -0.02 1.64 16 33 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.15 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.14 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.85 7.48 -2.39 -0.02 1.84 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.37 20.64 7.51 -92.71 -0.70 19.95 16 44 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -88.68 374.79 -0.99 -89.67 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.29 Total: 22.53 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.87 Total: -5.31 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.22 Total: -120.37 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -4.66 Total: -62.96 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 27.50 SS G_CDS: -0.30 Total: 27.20 kcal Total: -88.68 -0.99 -89.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106327730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.636 kcal (2) G-P(sol) polarization free energy of solvation -88.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.16 seconds