Wall clock time and date at job start Tue Mar 31 2020 04:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 C 1.53004 * 109.46817 * 240.00347 * 2 1 3 5 5 S 1.81394 * 109.47195 * 59.99899 * 4 2 1 6 6 C 1.81401 * 101.92202 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57927 * 294.48563 * 5 4 2 8 8 O 1.42098 * 108.58024 * 65.51209 * 5 4 2 9 9 C 1.50692 * 109.47314 * 119.99972 * 2 1 3 10 10 O 1.21288 * 120.00138 * 114.25744 * 9 2 1 11 11 N 1.34776 * 120.00363 * 294.26142 * 9 2 1 12 12 C 1.46959 * 120.59516 * 183.80428 * 11 9 2 13 13 C 1.53373 * 108.63488 * 235.24492 * 12 11 9 14 14 N 1.46962 * 108.63240 * 310.57761 * 13 12 11 15 15 C 1.36941 * 120.59083 * 235.20165 * 14 13 12 16 16 H 1.07996 * 120.00292 * 149.46028 * 15 14 13 17 17 C 1.38814 * 120.00062 * 329.17958 * 15 14 13 18 18 N 1.31620 * 120.00059 * 342.91023 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 162.90338 * 17 15 14 20 20 H 1.48500 * 109.46906 * 60.00477 * 19 17 15 21 21 H 1.48506 * 109.46928 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47278 * 300.00327 * 19 17 15 23 23 C 1.46960 * 118.81721 * 55.47821 * 14 13 12 24 24 C 1.46962 * 120.59005 * 3.82191 * 11 9 2 25 25 H 1.09000 * 109.46724 * 287.04190 * 1 2 3 26 26 H 1.08998 * 109.46865 * 47.03880 * 1 2 3 27 27 H 1.08996 * 109.46772 * 167.04174 * 1 2 3 28 28 H 1.09003 * 109.47218 * 195.90145 * 3 2 1 29 29 H 1.09001 * 109.46999 * 315.90511 * 3 2 1 30 30 H 1.09000 * 109.47069 * 75.90389 * 3 2 1 31 31 H 1.09001 * 109.46786 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.46832 * 299.99563 * 4 2 1 33 33 H 1.08998 * 109.47015 * 59.99928 * 6 5 4 34 34 H 1.09001 * 109.47342 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46750 * 299.99725 * 6 5 4 36 36 H 1.09000 * 109.61366 * 115.50058 * 12 11 9 37 37 H 1.09009 * 109.61221 * 354.99038 * 12 11 9 38 38 H 1.08999 * 109.61369 * 190.82953 * 13 12 11 39 39 H 1.09004 * 109.75179 * 70.40489 * 13 12 11 40 40 H 0.96992 * 120.00192 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.61027 * 64.25982 * 23 14 13 42 42 H 1.08992 * 109.61516 * 184.77657 * 23 14 13 43 43 H 1.09004 * 109.60840 * 244.49349 * 24 11 9 44 44 H 1.08997 * 109.61615 * 4.83856 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.4353 0.1340 -2.7303 6 6 2.1477 -0.8721 -4.0611 7 8 0.0204 0.0119 -2.7776 8 8 2.0220 1.4273 -2.7777 9 6 2.0324 -0.7104 1.2304 10 8 2.6414 -1.7536 1.1222 11 7 1.8050 -0.1865 2.4512 12 6 2.3598 -0.8235 3.6537 13 6 1.2115 -1.1154 4.6277 14 7 0.4039 0.1029 4.7801 15 6 0.1720 0.6348 6.0205 16 1 0.0393 1.7004 6.1350 17 6 0.1018 -0.1965 7.1300 18 7 -0.0802 -1.4905 6.9724 19 14 0.2658 0.5213 8.8468 20 1 -0.8151 1.5142 9.0734 21 1 0.1571 -0.5673 9.8510 22 1 1.5861 1.1877 8.9807 23 6 -0.1556 0.7368 3.5781 24 6 0.9973 1.0318 2.6035 25 1 -0.3633 0.3012 0.9826 26 1 -0.3633 0.7004 -0.7521 27 1 -0.3633 -1.0015 -0.2304 28 1 3.0930 1.4557 -0.2816 29 1 1.4653 2.0311 -0.7151 30 1 1.9252 1.8685 0.9967 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7488 -1.2493 33 1 1.7815 -1.8955 -3.9787 34 1 1.8554 -0.4579 -5.0261 35 1 3.2345 -0.8672 -3.9782 36 1 3.0777 -0.1523 4.1251 37 1 2.8528 -1.7562 3.3793 38 1 1.6183 -1.4081 5.5957 39 1 0.5899 -1.9195 4.2340 40 1 -0.1289 -2.0714 7.7476 41 1 -0.8716 0.0623 3.1083 42 1 -0.6518 1.6676 3.8526 43 1 1.6182 1.8351 3.0002 44 1 0.5929 1.3263 1.6351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113706780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:21 Heat of formation + Delta-G solvation = -54.896788 kcal Electronic energy + Delta-G solvation = -26601.392839 eV Core-core repulsion = 22876.277561 eV Total energy + Delta-G solvation = -3725.115278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.46928 -37.19761 -37.01237 -36.45660 -35.74911 -33.88961 -31.21706 -30.52132 -30.04016 -27.68260 -27.48161 -27.08863 -24.20823 -23.01348 -22.22419 -20.16771 -19.05852 -18.66958 -17.12682 -16.71221 -16.37135 -16.25380 -15.74254 -15.54065 -15.05822 -14.80214 -14.41787 -14.03527 -13.75794 -13.64070 -13.56005 -13.53539 -13.31061 -13.27986 -12.81195 -12.46452 -12.27001 -12.19575 -11.94238 -11.87692 -11.62431 -11.32738 -11.27430 -11.17803 -11.02140 -10.80840 -10.75727 -10.64565 -10.55472 -10.26589 -10.00814 -9.86587 -9.24664 -8.60718 -8.29176 -6.71184 -5.87863 -3.35318 -0.27590 2.48889 2.87055 3.21969 3.33495 3.39906 3.40406 3.49039 3.76204 4.15737 4.41311 4.42799 4.44672 4.54956 4.68521 4.87335 5.14527 5.20307 5.28580 5.29591 5.40820 5.47186 5.58383 5.68185 5.71271 5.76767 5.79277 5.86191 6.05558 6.15992 6.17858 6.28598 6.35921 6.45308 6.67660 6.81417 7.20307 7.47412 7.70778 7.84077 8.34708 8.46793 9.09210 9.71423 10.29714 11.19556 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035291 B = 0.003202 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.223248 B = 8743.717142 C = 8972.336327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.583 4.583 5 S 2.419 3.581 6 C -0.659 4.659 7 O -0.934 6.934 8 O -0.936 6.936 9 C 0.527 3.473 10 O -0.554 6.554 11 N -0.590 5.590 12 C 0.086 3.914 13 C 0.161 3.839 14 N -0.589 5.589 15 C -0.262 4.262 16 H 0.066 0.934 17 C 0.008 3.992 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.129 3.871 24 C 0.065 3.935 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.256 0.744 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 2.778 -19.493 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 C -0.243 4.243 4 C -0.713 4.713 5 S 2.602 3.398 6 C -0.808 4.808 7 O -0.931 6.931 8 O -0.933 6.933 9 C 0.313 3.687 10 O -0.433 6.433 11 N -0.321 5.321 12 C -0.037 4.037 13 C 0.034 3.966 14 N -0.312 5.312 15 C -0.392 4.392 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.001 3.999 24 C -0.059 4.059 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.489 2.845 -19.456 20.169 hybrid contribution 0.636 -0.587 0.985 1.311 sum 5.125 2.258 -18.471 19.301 Atomic orbital electron populations 1.22620 0.91116 1.04763 1.05353 1.20363 0.97930 0.96409 0.91995 1.22720 1.03060 0.92914 1.05576 1.30242 1.12872 1.13570 1.14585 1.07905 0.76423 0.77144 0.78354 1.30284 1.14138 1.16744 1.19670 1.93615 1.26810 1.86932 1.85774 1.93608 1.79397 1.34469 1.85846 1.20023 0.79686 0.84895 0.84094 1.90627 1.42987 1.23332 1.86343 1.47934 1.50777 1.27486 1.05890 1.22529 0.98327 0.97700 0.85134 1.21120 0.89639 0.88248 0.97556 1.43962 1.56589 1.29139 1.01507 1.19119 1.45440 0.91244 0.83384 0.91591 1.25148 0.99693 0.95733 0.98631 1.70019 1.51347 1.03287 1.29522 0.86351 0.78280 0.78047 0.83938 1.20762 1.21599 1.20893 1.21426 0.92342 0.97597 0.88506 1.23084 0.94949 0.86559 1.01344 0.89182 0.89878 0.90722 0.90931 0.90016 0.89030 0.84535 0.84220 0.85260 0.85321 0.85330 0.92042 0.90137 0.88776 0.95744 0.93368 0.95686 0.91313 0.91297 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 7.00 37.16 0.26 -2.00 16 2 C -0.06 -0.80 0.52 -155.66 -0.08 -0.88 16 3 C -0.19 -2.14 6.86 37.16 0.25 -1.88 16 4 C -0.58 -5.67 4.05 37.16 0.15 -5.52 16 5 S 2.42 20.46 4.75 -107.50 -0.51 19.95 16 6 C -0.66 -3.22 10.62 101.05 1.07 -2.15 16 7 O -0.93 -10.69 15.59 -57.83 -0.90 -11.59 16 8 O -0.94 -10.41 15.66 -57.83 -0.91 -11.31 16 9 C 0.53 8.81 6.48 -10.99 -0.07 8.74 16 10 O -0.55 -10.71 15.39 5.55 0.09 -10.63 16 11 N -0.59 -10.36 2.94 -172.21 -0.51 -10.87 16 12 C 0.09 1.70 6.60 -3.60 -0.02 1.68 16 13 C 0.16 3.76 5.49 -3.60 -0.02 3.74 16 14 N -0.59 -14.10 2.95 -171.77 -0.51 -14.61 16 15 C -0.26 -6.89 9.55 -15.06 -0.14 -7.03 16 16 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 17 C 0.01 0.21 4.89 -17.43 -0.09 0.12 16 18 N -0.90 -25.47 11.38 55.49 0.63 -24.84 16 19 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 2.49 6.50 -3.37 -0.02 2.47 16 24 C 0.06 1.02 3.90 -3.36 -0.01 1.01 16 25 H 0.09 1.17 4.54 -51.93 -0.24 0.93 16 26 H 0.08 0.94 6.03 -51.93 -0.31 0.63 16 27 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 29 H 0.08 0.87 6.25 -51.93 -0.32 0.55 16 30 H 0.09 1.05 4.48 -51.93 -0.23 0.82 16 31 H 0.14 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.14 1.24 8.04 -51.93 -0.42 0.82 16 33 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.58 6.99 -51.92 -0.36 1.22 16 38 H 0.09 2.43 6.19 -51.93 -0.32 2.11 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.50 7.65 -51.93 -0.40 0.10 16 42 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 43 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 44 H 0.10 1.23 2.99 -51.93 -0.16 1.08 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -34.93 342.23 -7.71 -42.64 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.51 Total: 1.80 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 1.28 Total: -1.71 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.38 Total: -50.31 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.72 Total: -33.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 20.46 SS G_CDS: -0.51 Total: 19.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.93 -7.71 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113706780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.256 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds