Wall clock time and date at job start Tue Mar 31 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58672 * 2 1 4 4 C 1.53193 * 109.70197 * 239.64451 * 2 1 3 5 5 C 1.53043 * 109.31151 * 185.50885 * 4 2 1 6 6 C 1.53042 * 109.53770 * 61.36592 * 5 4 2 7 7 H 1.09003 * 109.49449 * 178.68425 * 6 5 4 8 8 N 1.46499 * 109.49555 * 58.61766 * 6 5 4 9 9 C 1.34780 * 119.99549 * 155.00005 * 8 6 5 10 10 O 1.21285 * 119.99822 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00010 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.47203 * 180.02562 * 11 9 8 13 13 S 1.81395 * 109.47037 * 179.97438 * 12 11 9 14 14 C 1.81397 * 101.92156 * 179.97438 * 13 12 11 15 15 O 1.42099 * 108.58234 * 294.48610 * 13 12 11 16 16 O 1.42101 * 108.57888 * 65.51017 * 13 12 11 17 17 C 1.53626 * 109.23939 * 298.51184 * 6 5 4 18 18 N 1.46921 * 108.54379 * 54.85573 * 17 6 5 19 19 C 1.36939 * 120.62844 * 126.37193 * 18 17 6 20 20 H 1.08001 * 119.99726 * 209.43114 * 19 18 17 21 21 C 1.38808 * 120.00336 * 29.42364 * 19 18 17 22 22 N 1.31618 * 119.99713 * 24.35748 * 21 19 18 23 23 Si 1.86802 * 120.00544 * 204.35698 * 21 19 18 24 24 H 1.48502 * 109.46862 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46996 * 240.00482 * 23 21 19 26 26 H 1.48501 * 109.47392 * 119.99813 * 23 21 19 27 27 H 1.09001 * 109.47224 * 299.71607 * 1 2 3 28 28 H 1.09008 * 109.47301 * 59.71287 * 1 2 3 29 29 H 1.08997 * 109.47575 * 179.71838 * 1 2 3 30 30 H 1.08998 * 109.50079 * 305.46111 * 4 2 1 31 31 H 1.08999 * 109.49960 * 65.52731 * 4 2 1 32 32 H 1.09000 * 109.45829 * 181.38436 * 5 4 2 33 33 H 1.09001 * 109.45913 * 301.36103 * 5 4 2 34 34 H 0.96999 * 120.00374 * 335.00000 * 8 6 5 35 35 H 1.09005 * 109.46507 * 300.00391 * 11 9 8 36 36 H 1.08999 * 109.46895 * 59.99524 * 11 9 8 37 37 H 1.08999 * 109.46845 * 300.00079 * 12 11 9 38 38 H 1.08996 * 109.47338 * 60.00155 * 12 11 9 39 39 H 1.08995 * 109.47233 * 60.00146 * 14 13 12 40 40 H 1.09004 * 109.47510 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.47183 * 299.99440 * 14 13 12 42 42 H 1.09004 * 109.73753 * 295.11638 * 17 6 5 43 43 H 1.08999 * 109.66395 * 174.55150 * 17 6 5 44 44 H 0.96996 * 120.00481 * 4.04014 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5706 -0.8444 -1.1674 6 6 3.9601 -1.6608 0.0670 7 1 5.0446 -1.7625 0.1085 8 7 3.3471 -2.9891 -0.0119 9 6 3.9053 -4.0286 0.6396 10 8 4.9148 -3.8642 1.2915 11 6 3.2744 -5.3948 0.5590 12 6 4.0990 -6.3867 1.3819 13 16 3.3392 -8.0310 1.2854 14 6 4.4600 -9.0224 2.3107 15 8 2.0690 -7.9809 1.9206 16 8 3.4263 -8.4921 -0.0559 17 6 3.4659 -0.9376 1.3290 18 7 2.0225 -0.6981 1.1953 19 6 1.1534 -1.1125 2.1690 20 1 0.1395 -1.3796 1.9097 21 6 1.5754 -1.1894 3.4891 22 7 2.5840 -0.4512 3.9016 23 14 0.7120 -2.3406 4.6803 24 1 -0.3824 -3.0538 3.9739 25 1 0.1446 -1.5544 5.8051 26 1 1.6869 -3.3283 5.2087 27 1 -0.3634 0.5094 0.8925 28 1 -0.3634 0.5183 -0.8875 29 1 -0.3634 -1.0276 -0.0051 30 1 1.6079 -1.7257 -1.2906 31 1 1.7684 -0.1675 -2.1365 32 1 3.9429 -1.3408 -2.0635 33 1 4.0071 0.1519 -1.0962 34 1 2.5396 -3.1204 -0.5329 35 1 2.2596 -5.3503 0.9545 36 1 3.2451 -5.7207 -0.4807 37 1 5.1138 -6.4312 0.9867 38 1 4.1278 -6.0606 2.4215 39 1 4.4791 -8.6188 3.3230 40 1 4.1108 -10.0547 2.3373 41 1 5.4640 -8.9898 1.8875 42 1 3.9860 0.0145 1.4352 43 1 3.6537 -1.5585 2.2049 44 1 2.9945 0.1890 3.2997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132140971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:21 Heat of formation + Delta-G solvation = -92.208059 kcal Electronic energy + Delta-G solvation = -26277.661397 eV Core-core repulsion = 22550.928181 eV Total energy + Delta-G solvation = -3726.733216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.67927 -37.82262 -37.10637 -36.16599 -34.31302 -33.12851 -32.96845 -30.74366 -29.84330 -29.71297 -26.44298 -25.21705 -24.52327 -22.10072 -20.89663 -20.32294 -19.02249 -18.81072 -17.58225 -16.87185 -16.43777 -16.18703 -16.03403 -15.41041 -15.33999 -14.65557 -14.20757 -13.84504 -13.69407 -13.50969 -13.43883 -13.41962 -13.25763 -13.03703 -12.66294 -12.38014 -12.21420 -12.11758 -11.86577 -11.48779 -11.40314 -11.27298 -11.24088 -11.20712 -10.85217 -10.71722 -10.64744 -10.37356 -10.08374 -9.97740 -9.78668 -9.47474 -9.22634 -8.53343 -8.30626 -6.81255 -6.02764 -3.20657 -0.19545 2.55856 3.02344 3.34362 3.51997 3.55081 3.66936 3.73265 3.85706 4.40861 4.55470 4.58555 4.59071 4.84518 5.02255 5.14729 5.26318 5.30963 5.37296 5.39506 5.42043 5.55514 5.56121 5.74219 5.86393 5.99722 6.04711 6.20097 6.26577 6.34253 6.36400 6.50693 6.51351 6.65208 6.97799 7.02592 7.12696 7.20337 7.96400 8.07488 8.61166 8.65329 9.14211 9.88415 10.32927 11.25587 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.004640 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.071649 B = 6033.225209 C = 7120.366356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.124 3.876 7 H 0.077 0.923 8 N -0.699 5.699 9 C 0.522 3.478 10 O -0.545 6.545 11 C -0.134 4.134 12 C -0.591 4.591 13 S 2.420 3.580 14 C -0.655 4.655 15 O -0.936 6.936 16 O -0.943 6.943 17 C 0.142 3.858 18 N -0.590 5.590 19 C -0.347 4.347 20 H 0.060 0.940 21 C -0.022 4.022 22 N -0.916 5.916 23 Si 1.061 2.939 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.290 1.290 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.023 0.977 43 H 0.087 0.913 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -11.225 -8.964 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.039 0.961 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.018 3.982 7 H 0.095 0.905 8 N -0.350 5.350 9 C 0.306 3.694 10 O -0.423 6.423 11 C -0.175 4.175 12 C -0.720 4.720 13 S 2.602 3.398 14 C -0.805 4.805 15 O -0.933 6.933 16 O -0.941 6.941 17 C 0.015 3.985 18 N -0.314 5.314 19 C -0.476 4.476 20 H 0.078 0.922 21 C -0.224 4.224 22 N -0.555 5.555 23 Si 0.891 3.109 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.217 1.217 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.386 -11.961 -7.371 14.452 hybrid contribution 0.359 0.843 -1.270 1.566 sum 3.745 -11.118 -8.640 14.570 Atomic orbital electron populations 1.21760 0.95818 1.01329 1.00095 1.20449 0.93181 0.93284 0.87057 0.96084 1.22060 0.95010 1.00843 0.99085 1.21686 0.97120 1.00082 0.96754 1.21671 0.96940 0.81939 0.97662 0.90538 1.45793 1.29573 1.08411 1.51187 1.20010 0.84482 0.85671 0.79226 1.90673 1.25546 1.85139 1.40970 1.21332 1.00993 0.93458 1.01734 1.30093 1.12257 1.18824 1.10827 1.07842 0.77182 0.78493 0.76279 1.30248 1.17602 1.15848 1.16794 1.93625 1.36350 1.85964 1.77386 1.93588 1.87161 1.79644 1.33667 1.21426 0.84835 0.96620 0.95660 1.44153 1.02068 1.65359 1.19867 1.19908 0.96151 1.43460 0.88046 0.92211 1.25773 1.00184 1.00629 0.95830 1.70722 1.26160 1.21030 1.37638 0.83584 0.75373 0.76233 0.75682 1.21652 1.22131 1.21678 0.92069 0.94484 0.92855 0.92497 0.92728 0.92740 0.91161 0.76726 0.87040 0.87751 0.84390 0.83954 0.85089 0.85366 0.85317 0.95919 0.89519 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.96 37.16 0.30 -2.12 16 2 C 0.17 3.23 3.49 -67.60 -0.24 2.99 16 3 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -2.02 5.21 -26.61 -0.14 -2.16 16 5 C -0.12 -1.78 5.58 -26.69 -0.15 -1.93 16 6 C 0.12 2.25 2.81 -67.58 -0.19 2.06 16 7 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 8 N -0.70 -11.81 4.92 -53.47 -0.26 -12.08 16 9 C 0.52 9.04 7.80 -10.98 -0.09 8.95 16 10 O -0.55 -11.24 15.64 5.55 0.09 -11.15 16 11 C -0.13 -1.75 5.71 -27.88 -0.16 -1.91 16 12 C -0.59 -6.30 5.09 37.16 0.19 -6.11 16 13 S 2.42 23.16 5.36 -107.50 -0.58 22.58 16 14 C -0.66 -3.90 10.62 101.05 1.07 -2.83 16 15 O -0.94 -12.88 18.10 -57.83 -1.05 -13.93 16 16 O -0.94 -11.71 18.10 -57.83 -1.05 -12.76 16 17 C 0.14 3.23 4.33 -3.49 -0.02 3.21 16 18 N -0.59 -13.68 2.74 -164.52 -0.45 -14.14 16 19 C -0.35 -9.11 8.48 -15.06 -0.13 -9.23 16 20 H 0.06 1.58 6.30 -52.49 -0.33 1.25 16 21 C -0.02 -0.60 4.69 -17.43 -0.08 -0.68 16 22 N -0.92 -27.38 12.51 55.49 0.69 -26.69 16 23 Si 1.06 25.62 29.98 -169.99 -5.10 20.52 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 29 H 0.05 0.98 7.44 -51.93 -0.39 0.60 16 30 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 5.97 6.77 -40.82 -0.28 5.69 16 35 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.14 1.23 8.10 -51.92 -0.42 0.81 16 38 H 0.14 1.55 8.10 -51.93 -0.42 1.13 16 39 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.02 0.54 7.84 -51.93 -0.41 0.13 16 43 H 0.09 2.35 6.41 -51.93 -0.33 2.01 16 44 H 0.27 8.09 6.63 -40.82 -0.27 7.82 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -37.22 361.06 -8.87 -46.09 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.99 Total: 5.86 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.38 Total: -9.76 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.02 Total: -52.90 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -2.01 Total: -37.84 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.52 kcal Atomic # 16 Polarization: 23.16 SS G_CDS: -0.58 Total: 22.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.22 -8.87 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132140971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.119 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds