Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 109.70026 * 2 1 4 4 C 1.53188 * 109.59143 * 120.35995 * 2 1 3 5 5 C 1.53040 * 109.31475 * 174.42469 * 4 2 1 6 6 C 1.53048 * 109.53404 * 298.63426 * 5 4 2 7 7 H 1.08997 * 109.49353 * 301.37752 * 6 5 4 8 8 N 1.46504 * 109.49488 * 181.31659 * 6 5 4 9 9 C 1.34774 * 120.00012 * 154.72386 * 8 6 5 10 10 O 1.21284 * 119.99682 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00172 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.47330 * 179.97438 * 11 9 8 13 13 S 1.81398 * 109.47206 * 179.97438 * 12 11 9 14 14 C 1.81404 * 101.91995 * 180.02562 * 13 12 11 15 15 O 1.42095 * 108.57949 * 294.48730 * 13 12 11 16 16 O 1.42100 * 108.57808 * 65.51696 * 13 12 11 17 17 C 1.53189 * 109.31339 * 61.36507 * 6 5 4 18 18 N 1.46920 * 108.77663 * 305.36635 * 17 6 5 19 19 C 1.36936 * 120.62943 * 233.58997 * 18 17 6 20 20 H 1.08000 * 120.00221 * 150.18056 * 19 18 17 21 21 C 1.38812 * 119.99986 * 330.18242 * 19 18 17 22 22 N 1.31623 * 119.99887 * 344.48150 * 21 19 18 23 23 Si 1.86797 * 120.00248 * 164.48453 * 21 19 18 24 24 H 1.48503 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47440 * 119.99909 * 23 21 19 26 26 H 1.48500 * 109.47227 * 240.00039 * 23 21 19 27 27 H 1.09008 * 109.47061 * 299.63657 * 1 2 3 28 28 H 1.08998 * 109.47863 * 59.64047 * 1 2 3 29 29 H 1.09002 * 109.46994 * 179.64555 * 1 2 3 30 30 H 1.08991 * 109.49931 * 54.46882 * 4 2 1 31 31 H 1.09001 * 109.49533 * 294.36938 * 4 2 1 32 32 H 1.08995 * 109.46226 * 178.61325 * 5 4 2 33 33 H 1.08999 * 109.45347 * 58.64440 * 5 4 2 34 34 H 0.97005 * 119.99874 * 334.99759 * 8 6 5 35 35 H 1.09000 * 109.46885 * 299.99981 * 11 9 8 36 36 H 1.08998 * 109.47414 * 59.99620 * 11 9 8 37 37 H 1.09000 * 109.47202 * 299.99886 * 12 11 9 38 38 H 1.09008 * 109.47012 * 59.99733 * 12 11 9 39 39 H 1.08996 * 109.47477 * 59.99841 * 14 13 12 40 40 H 1.08999 * 109.46829 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47140 * 299.99859 * 14 13 12 42 42 H 1.09000 * 109.58577 * 65.15320 * 17 6 5 43 43 H 1.08997 * 109.58325 * 185.57627 * 17 6 5 44 44 H 0.97000 * 120.00086 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8479 1.1700 6 6 3.9569 -1.6656 -0.0638 7 1 3.4988 -2.6529 -0.0052 8 7 5.4143 -1.8051 -0.1179 9 6 5.9676 -2.8509 -0.7634 10 8 5.2590 -3.6766 -1.2991 11 6 7.4666 -2.9948 -0.8186 12 6 7.8294 -4.2567 -1.6040 13 16 9.6338 -4.4295 -1.6710 14 6 9.8286 -5.9577 -2.6287 15 8 10.1641 -3.3505 -2.4284 16 8 10.1162 -4.6556 -0.3537 17 6 3.4649 -0.9468 -1.3239 18 7 2.0225 -0.6994 -1.1946 19 6 1.1536 -1.1125 -2.1690 20 1 0.1396 -1.3795 -1.9105 21 6 1.5762 -1.1882 -3.4891 22 7 2.6870 -0.5873 -3.8600 23 14 0.5686 -2.1429 -4.7391 24 1 -0.6270 -2.7203 -4.0740 25 1 0.1363 -1.2299 -5.8276 26 1 1.3950 -3.2368 -5.3096 27 1 -0.3633 0.5082 0.8933 28 1 -0.3635 0.5194 -0.8867 29 1 -0.3633 -1.0277 -0.0064 30 1 1.6031 -1.7253 1.2912 31 1 1.7661 -0.1669 2.1367 32 1 3.9379 -1.3448 2.0666 33 1 4.0060 0.1475 1.0990 34 1 5.9809 -1.1470 0.3143 35 1 7.8974 -2.1232 -1.3115 36 1 7.8619 -3.0715 0.1943 37 1 7.3987 -5.1281 -1.1107 38 1 7.4341 -4.1804 -2.6170 39 1 9.3743 -5.8312 -3.6114 40 1 10.8891 -6.1813 -2.7444 41 1 9.3395 -6.7793 -2.1054 42 1 3.9902 0.0022 -1.4319 43 1 3.6517 -1.5715 -2.1974 44 1 2.9821 -0.6398 -4.7825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132140972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = -91.883303 kcal Electronic energy + Delta-G solvation = -25521.028548 eV Core-core repulsion = 21794.309414 eV Total energy + Delta-G solvation = -3726.719133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.60484 -37.69486 -37.19071 -36.25223 -34.47560 -33.21985 -32.81829 -30.68049 -29.92468 -29.82229 -26.40352 -25.29697 -24.31604 -22.27274 -20.73510 -20.02699 -19.23573 -19.08931 -17.49107 -16.57687 -16.45410 -16.23829 -15.99861 -15.53954 -15.35534 -14.91371 -13.97429 -13.83970 -13.73373 -13.54621 -13.46568 -13.38144 -13.28409 -12.74192 -12.67814 -12.37633 -12.29996 -12.20387 -11.88027 -11.64922 -11.42683 -11.31821 -11.13181 -10.90644 -10.82226 -10.73225 -10.53394 -10.40460 -10.26060 -9.97410 -9.79960 -9.46839 -9.39951 -8.57012 -8.43452 -6.61492 -5.75416 -3.20121 -0.27160 2.48034 2.93311 3.24365 3.40249 3.47957 3.49349 3.61237 3.78416 4.30189 4.49676 4.51192 4.52395 4.76355 4.90654 5.26036 5.33164 5.35022 5.35233 5.39197 5.49656 5.56204 5.65519 5.67819 5.95628 6.09616 6.26154 6.29358 6.38202 6.44267 6.48670 6.61803 6.72956 6.91292 7.03777 7.12032 7.30326 7.71443 7.83862 7.88715 8.48975 8.57393 9.23677 9.87822 10.43512 11.32860 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.003471 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.804177 B = 8064.799497 C = 9422.211405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.082 0.918 8 N -0.720 5.720 9 C 0.517 3.483 10 O -0.531 6.531 11 C -0.134 4.134 12 C -0.592 4.592 13 S 2.423 3.577 14 C -0.655 4.655 15 O -0.939 6.939 16 O -0.943 6.943 17 C 0.168 3.832 18 N -0.584 5.584 19 C -0.253 4.253 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.018 0.982 43 H 0.093 0.907 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 -6.226 7.892 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.100 0.900 8 N -0.370 5.370 9 C 0.300 3.700 10 O -0.407 6.407 11 C -0.175 4.175 12 C -0.722 4.722 13 S 2.605 3.395 14 C -0.805 4.805 15 O -0.936 6.936 16 O -0.940 6.940 17 C 0.041 3.959 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.216 1.216 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.036 0.964 43 H 0.111 0.889 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.959 -6.279 7.675 15.535 hybrid contribution -0.713 -0.718 -0.937 1.379 sum 11.245 -6.998 6.738 14.860 Atomic orbital electron populations 1.21798 0.95977 1.01428 1.00171 1.20495 0.93086 0.93564 0.87048 0.95733 1.22044 0.94300 1.01309 0.98936 1.21683 0.97425 0.99686 0.96674 1.22020 0.77714 1.00911 0.98346 0.90003 1.46069 1.08758 1.26446 1.55737 1.20087 0.89394 0.81724 0.78757 1.90739 1.63247 1.42045 1.44680 1.21350 0.96337 0.97448 1.02339 1.30114 1.24500 1.06614 1.10939 1.07747 0.78191 0.77435 0.76077 1.30244 1.11761 1.22396 1.16074 1.93611 1.76539 1.50801 1.72671 1.93593 1.78164 1.86001 1.36229 1.21064 0.83628 0.96893 0.94266 1.44030 1.02626 1.64787 1.19278 1.19181 0.95076 1.37961 0.85987 0.91193 1.25087 0.97801 0.99324 0.97046 1.70017 1.24111 1.43714 1.16603 0.86268 0.79628 0.79667 0.81484 1.20208 1.21775 1.21575 0.94337 0.92011 0.92790 0.92101 0.92661 0.93063 0.92220 0.77274 0.87273 0.87589 0.84289 0.83990 0.85127 0.85364 0.85271 0.96442 0.88929 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.15 0.30 -2.24 16 2 C 0.16 3.34 3.50 -67.60 -0.24 3.10 16 3 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 4 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 5 C -0.12 -1.83 5.35 -26.69 -0.14 -1.98 16 6 C 0.12 2.18 2.61 -67.81 -0.18 2.00 16 7 H 0.08 1.77 7.57 -51.93 -0.39 1.37 16 8 N -0.72 -11.11 5.08 -53.69 -0.27 -11.39 16 9 C 0.52 8.31 7.80 -10.99 -0.09 8.22 16 10 O -0.53 -10.91 15.64 5.55 0.09 -10.83 16 11 C -0.13 -1.48 5.71 -27.88 -0.16 -1.64 16 12 C -0.59 -5.49 5.09 37.16 0.19 -5.30 16 13 S 2.42 19.66 5.36 -107.50 -0.58 19.09 16 14 C -0.66 -3.29 10.62 101.05 1.07 -2.22 16 15 O -0.94 -11.24 18.10 -57.83 -1.05 -12.28 16 16 O -0.94 -10.62 18.10 -57.83 -1.05 -11.66 16 17 C 0.17 4.01 4.86 -3.72 -0.02 4.00 16 18 N -0.58 -14.40 2.99 -164.78 -0.49 -14.89 16 19 C -0.25 -6.87 8.58 -15.06 -0.13 -7.00 16 20 H 0.07 1.86 6.23 -52.49 -0.33 1.53 16 21 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 22 N -0.90 -26.47 11.23 55.49 0.62 -25.85 16 23 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 29 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.39 4.64 8.60 -40.82 -0.35 4.29 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.14 1.13 8.10 -51.92 -0.42 0.71 16 38 H 0.14 1.32 8.10 -51.92 -0.42 0.90 16 39 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.60 6.15 -51.93 -0.32 2.28 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -38.30 365.60 -9.08 -47.38 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.22 Total: 2.98 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 0.38 Total: -5.21 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.14 Total: -52.13 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -2.01 Total: -34.77 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: 19.66 SS G_CDS: -0.58 Total: 19.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.30 -9.08 -47.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132140972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.499 kcal (2) G-P(sol) polarization free energy of solvation -38.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds