Wall clock time and date at job start Tue Mar 31 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58491 * 2 1 4 4 C 1.53196 * 109.58531 * 120.28639 * 2 1 3 5 5 C 1.53035 * 109.31184 * 174.42247 * 4 2 1 6 6 C 1.53045 * 109.53534 * 298.63033 * 5 4 2 7 7 H 1.09004 * 109.49102 * 181.35182 * 6 5 4 8 8 N 1.46492 * 109.50080 * 301.41518 * 6 5 4 9 9 C 1.34777 * 120.00300 * 205.27469 * 8 6 5 10 10 O 1.21282 * 120.00001 * 359.72804 * 9 8 6 11 11 C 1.50699 * 120.00328 * 179.72344 * 9 8 6 12 12 C 1.53002 * 109.47123 * 179.97438 * 11 9 8 13 13 S 1.81394 * 109.47032 * 180.02562 * 12 11 9 14 14 C 1.81401 * 101.92334 * 180.02562 * 13 12 11 15 15 O 1.42104 * 108.58123 * 294.49254 * 13 12 11 16 16 O 1.42096 * 108.58029 * 65.51598 * 13 12 11 17 17 C 1.53193 * 109.31115 * 61.37130 * 6 5 4 18 18 N 1.46927 * 108.77410 * 305.36046 * 17 6 5 19 19 C 1.36933 * 120.62916 * 233.59001 * 18 17 6 20 20 H 1.08008 * 120.00172 * 150.90138 * 19 18 17 21 21 C 1.38811 * 120.00096 * 330.89428 * 19 18 17 22 22 N 1.31621 * 120.00104 * 160.74836 * 21 19 18 23 23 Si 1.86803 * 119.99947 * 340.75122 * 21 19 18 24 24 H 1.48497 * 109.46884 * 92.27387 * 23 21 19 25 25 H 1.48501 * 109.46945 * 212.27199 * 23 21 19 26 26 H 1.48497 * 109.47148 * 332.27339 * 23 21 19 27 27 H 1.09002 * 109.47254 * 299.71622 * 1 2 3 28 28 H 1.09006 * 109.46970 * 59.71584 * 1 2 3 29 29 H 1.08994 * 109.47392 * 179.71179 * 1 2 3 30 30 H 1.09003 * 109.49706 * 54.46470 * 4 2 1 31 31 H 1.09000 * 109.52107 * 294.38937 * 4 2 1 32 32 H 1.09003 * 109.45533 * 178.61498 * 5 4 2 33 33 H 1.08992 * 109.45212 * 58.64536 * 5 4 2 34 34 H 0.96999 * 120.00367 * 25.00239 * 8 6 5 35 35 H 1.08994 * 109.47356 * 300.00437 * 11 9 8 36 36 H 1.08998 * 109.46892 * 60.00369 * 11 9 8 37 37 H 1.08994 * 109.47404 * 300.00460 * 12 11 9 38 38 H 1.08998 * 109.46892 * 60.00422 * 12 11 9 39 39 H 1.09004 * 109.46968 * 59.99977 * 14 13 12 40 40 H 1.08995 * 109.47391 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47071 * 300.00114 * 14 13 12 42 42 H 1.08994 * 109.58544 * 65.14833 * 17 6 5 43 43 H 1.09004 * 109.58350 * 185.57697 * 17 6 5 44 44 H 0.97001 * 120.00310 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5674 -0.8466 1.1712 6 6 3.9568 -1.6659 -0.0614 7 1 5.0411 -1.7704 -0.1011 8 7 3.3404 -2.9925 0.0185 9 6 3.8999 -4.0355 -0.6260 10 8 4.9111 -3.8749 -1.2763 11 6 3.2694 -5.4015 -0.5388 12 6 4.0957 -6.3977 -1.3546 13 16 3.3362 -8.0417 -1.2501 14 6 4.4591 -9.0387 -2.2678 15 8 3.4211 -8.4952 0.0940 16 8 2.0672 -7.9956 -1.8878 17 6 3.4650 -0.9487 -1.3226 18 7 2.0225 -0.7010 -1.1936 19 6 1.1537 -1.1154 -2.1676 20 1 0.1363 -1.3709 -1.9106 21 6 1.5806 -1.2069 -3.4853 22 7 0.9079 -1.9416 -4.3455 23 14 3.1100 -0.2874 -4.0376 24 1 4.2950 -1.1723 -3.9036 25 1 2.9559 0.1220 -5.4567 26 1 3.2948 0.9190 -3.1916 27 1 -0.3634 0.5094 0.8925 28 1 -0.3633 0.5183 -0.8875 29 1 -0.3634 -1.0276 -0.0052 30 1 1.6028 -1.7238 1.2935 31 1 1.7659 -0.1647 2.1373 32 1 3.9376 -1.3424 2.0686 33 1 4.0059 0.1486 1.0990 34 1 2.5317 -3.1210 0.5385 35 1 3.2383 -5.7214 0.5027 36 1 2.2553 -5.3595 -0.9364 37 1 4.1264 -6.0776 -2.3960 38 1 5.1098 -6.4398 -0.9574 39 1 5.4624 -9.0033 -1.8431 40 1 4.1098 -10.0709 -2.2898 41 1 4.4798 -8.6408 -3.2824 42 1 3.9903 0.0001 -1.4316 43 1 3.6517 -1.5746 -2.1952 44 1 1.2064 -2.0059 -5.2662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132140973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:27 Heat of formation + Delta-G solvation = -83.953395 kcal Electronic energy + Delta-G solvation = -26281.715770 eV Core-core repulsion = 22555.340503 eV Total energy + Delta-G solvation = -3726.375267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -39.76526 -37.92605 -37.05727 -36.11609 -34.31671 -33.11396 -32.75865 -30.79350 -30.71545 -29.79972 -26.60622 -25.21713 -24.55026 -22.70004 -20.80517 -20.29017 -19.00511 -18.91876 -17.54539 -16.56251 -16.39702 -16.13904 -16.08646 -15.44870 -15.36334 -14.95365 -14.54491 -13.97753 -13.72233 -13.53165 -13.44307 -13.37441 -13.20941 -13.03084 -12.58606 -12.41961 -12.16255 -12.09544 -12.06462 -11.82629 -11.53227 -11.43461 -11.28867 -11.19752 -11.00096 -10.69726 -10.55939 -10.44088 -10.31036 -9.98067 -9.73796 -9.47993 -9.37732 -8.74526 -8.43386 -6.90674 -5.92038 -3.29780 -0.15207 2.60351 2.99881 3.36316 3.39562 3.50783 3.51890 3.72063 3.90008 4.44267 4.56493 4.58706 4.61630 4.86492 4.88300 5.01493 5.16742 5.25734 5.28195 5.40207 5.43537 5.46688 5.61420 5.74878 5.77133 5.91956 5.96996 6.09894 6.20515 6.22843 6.29214 6.36880 6.47274 6.48314 6.68942 6.93424 6.98249 7.03844 7.91266 8.00079 8.36840 8.61461 8.95783 9.75465 10.12318 11.23169 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.004392 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.864379 B = 6373.936856 C = 7076.649038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.128 3.872 7 H 0.080 0.920 8 N -0.700 5.700 9 C 0.525 3.475 10 O -0.549 6.549 11 C -0.133 4.133 12 C -0.591 4.591 13 S 2.421 3.579 14 C -0.656 4.656 15 O -0.944 6.944 16 O -0.933 6.933 17 C 0.114 3.886 18 N -0.598 5.598 19 C -0.258 4.258 20 H 0.091 0.909 21 C 0.028 3.972 22 N -0.907 5.907 23 Si 0.875 3.125 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.272 1.272 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.400 0.600 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.031 0.969 43 H 0.081 0.919 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -8.000 10.325 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.172 4.172 5 C -0.157 4.157 6 C 0.021 3.979 7 H 0.098 0.902 8 N -0.351 5.351 9 C 0.309 3.691 10 O -0.427 6.427 11 C -0.174 4.174 12 C -0.720 4.720 13 S 2.603 3.397 14 C -0.805 4.805 15 O -0.941 6.941 16 O -0.930 6.930 17 C -0.013 4.013 18 N -0.323 5.323 19 C -0.386 4.386 20 H 0.109 0.891 21 C -0.172 4.172 22 N -0.550 5.550 23 Si 0.706 3.294 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.197 1.197 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.236 0.764 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.832 -8.201 10.129 14.714 hybrid contribution 1.319 0.697 -0.832 1.708 sum 8.151 -7.503 9.297 14.463 Atomic orbital electron populations 1.21804 0.95288 1.01889 1.00387 1.20478 0.93589 0.93382 0.86259 0.95327 1.22074 0.94885 1.01154 0.99057 1.21695 0.97276 1.00063 0.96668 1.21483 0.97104 0.82189 0.97107 0.90232 1.45783 1.29504 1.08148 1.51650 1.20043 0.84303 0.85768 0.78948 1.90660 1.25601 1.85360 1.41090 1.21320 1.01212 0.93136 1.01771 1.30089 1.12120 1.18919 1.10859 1.07826 0.77180 0.78448 0.76247 1.30256 1.17599 1.15942 1.16745 1.93585 1.87174 1.79864 1.33493 1.93638 1.36281 1.85882 1.77247 1.21768 0.85783 0.97089 0.96637 1.44394 1.01682 1.65451 1.20732 1.18863 0.95610 1.38516 0.85636 0.89139 1.25294 0.97300 0.98662 0.95901 1.69812 1.41157 1.39375 1.04626 0.87059 0.84001 0.81437 0.76942 1.21361 1.23302 1.19706 0.94183 0.91798 0.92439 0.92146 0.92326 0.92360 0.91004 0.76434 0.87726 0.86715 0.83999 0.84524 0.85390 0.85376 0.85122 0.95154 0.90119 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.95 37.16 0.30 -2.06 16 2 C 0.17 3.06 3.50 -67.60 -0.24 2.82 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.89 5.21 -26.61 -0.14 -2.03 16 5 C -0.12 -1.65 5.59 -26.69 -0.15 -1.80 16 6 C 0.13 2.20 2.81 -67.81 -0.19 2.01 16 7 H 0.08 1.38 7.57 -51.93 -0.39 0.99 16 8 N -0.70 -11.54 4.91 -53.69 -0.26 -11.81 16 9 C 0.52 9.05 7.80 -10.99 -0.09 8.96 16 10 O -0.55 -11.20 15.64 5.56 0.09 -11.11 16 11 C -0.13 -1.78 5.71 -27.88 -0.16 -1.94 16 12 C -0.59 -6.48 5.09 37.16 0.19 -6.29 16 13 S 2.42 24.10 5.36 -107.50 -0.58 23.52 16 14 C -0.66 -4.12 10.62 101.05 1.07 -3.05 16 15 O -0.94 -11.97 18.10 -57.83 -1.05 -13.02 16 16 O -0.93 -13.49 18.10 -57.83 -1.05 -14.54 16 17 C 0.11 2.46 3.80 -3.71 -0.01 2.45 16 18 N -0.60 -13.31 2.67 -164.77 -0.44 -13.75 16 19 C -0.26 -6.83 9.05 -15.06 -0.14 -6.97 16 20 H 0.09 2.53 6.39 -52.48 -0.34 2.19 16 21 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 22 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 23 Si 0.87 22.81 24.34 -169.99 -4.14 18.67 16 24 H -0.29 -7.54 6.63 56.52 0.37 -7.17 16 25 H -0.30 -8.11 7.11 56.52 0.40 -7.70 16 26 H -0.27 -6.90 6.63 56.52 0.37 -6.53 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 29 H 0.06 1.03 7.40 -51.93 -0.38 0.65 16 30 H 0.06 0.86 6.40 -51.93 -0.33 0.52 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 5.82 6.77 -40.82 -0.28 5.55 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.14 1.61 8.10 -51.93 -0.42 1.19 16 38 H 0.14 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.03 0.66 7.03 -51.93 -0.37 0.30 16 43 H 0.08 2.04 4.62 -51.93 -0.24 1.80 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -38.18 355.58 -7.91 -46.09 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.98 Total: 4.59 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 0.36 Total: -7.19 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.07 Total: -52.38 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.01 Total: -38.66 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Atomic # 16 Polarization: 24.10 SS G_CDS: -0.58 Total: 23.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.18 -7.91 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132140973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.859 kcal (2) G-P(sol) polarization free energy of solvation -38.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds