Wall clock time and date at job start Tue Mar 31 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44554 * 2 1 4 4 C 1.53035 * 109.46137 * 240.02874 * 2 1 3 5 5 C 1.53195 * 109.31200 * 178.61273 * 4 2 1 6 6 N 1.46931 * 108.77110 * 54.63842 * 5 4 2 7 7 C 1.34776 * 120.62930 * 126.37290 * 6 5 4 8 8 O 1.21275 * 120.00127 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99953 * 0.02562 * 7 6 5 10 10 S 1.81406 * 109.47184 * 180.02562 * 9 7 6 11 11 C 1.81399 * 101.92290 * 180.02562 * 10 9 7 12 12 O 1.42103 * 108.57764 * 294.49004 * 10 9 7 13 13 O 1.42103 * 108.57721 * 65.51385 * 10 9 7 14 14 C 1.46919 * 118.74092 * 306.38691 * 6 5 4 15 15 C 1.53045 * 109.45681 * 119.96178 * 2 1 3 16 16 H 1.09000 * 109.52739 * 61.42112 * 15 2 1 17 17 C 1.53000 * 109.49689 * 301.33571 * 15 2 1 18 18 N 1.46499 * 109.46840 * 175.16149 * 17 15 2 19 19 C 1.36936 * 120.00002 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00140 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00562 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99699 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47093 * 90.00457 * 23 21 19 25 25 H 1.48504 * 109.47189 * 210.00360 * 23 21 19 26 26 H 1.48500 * 109.47392 * 329.99935 * 23 21 19 27 27 H 1.09002 * 109.47420 * 300.03954 * 1 2 3 28 28 H 1.09003 * 109.46607 * 60.03869 * 1 2 3 29 29 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49551 * 58.66578 * 4 2 1 31 31 H 1.08993 * 109.49844 * 298.56651 * 4 2 1 32 32 H 1.08998 * 109.59148 * 294.85230 * 5 4 2 33 33 H 1.08995 * 109.70304 * 174.49327 * 5 4 2 34 34 H 1.09003 * 109.47752 * 300.00572 * 9 7 6 35 35 H 1.09004 * 109.46783 * 60.00627 * 9 7 6 36 36 H 1.09007 * 109.46894 * 59.99850 * 11 10 9 37 37 H 1.09001 * 109.46920 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47122 * 300.00105 * 11 10 9 39 39 H 1.08999 * 109.58985 * 293.82483 * 14 6 5 40 40 H 1.09000 * 109.70846 * 173.46818 * 14 6 5 41 41 H 1.09002 * 109.47398 * 295.16475 * 17 15 2 42 42 H 1.09001 * 109.47194 * 55.16655 * 17 15 2 43 43 H 0.97000 * 120.00420 * 0.02562 * 18 17 15 44 44 H 0.96993 * 120.00222 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9615 -2.2577 0.0003 8 8 5.3632 -2.7118 1.0506 9 6 5.4614 -2.8216 -1.3047 10 16 6.6433 -4.1572 -0.9732 11 6 7.1037 -4.6749 -2.6496 12 8 7.7883 -3.6020 -0.3408 13 8 5.9524 -5.2268 -0.3422 14 6 3.5714 -0.6885 1.2644 15 6 2.0398 -0.7207 1.2502 16 1 1.6978 -1.7556 1.2391 17 6 1.5027 -0.0187 2.4990 18 7 1.8948 -0.7748 3.6909 19 6 1.5239 -0.3350 4.9336 20 1 0.9418 0.5692 5.0349 21 6 1.8959 -1.0511 6.0630 22 7 1.5389 -0.6286 7.2574 23 14 2.9020 -2.6152 5.8877 24 1 4.3482 -2.2806 5.9278 25 1 2.5769 -3.5405 7.0029 26 1 2.5806 -3.2682 4.5933 27 1 -0.3634 0.5144 0.8896 28 1 -0.3633 0.5133 -0.8904 29 1 -0.3634 -1.0276 0.0005 30 1 1.6573 -0.2208 -2.1398 31 1 1.6979 -1.7556 -1.2381 32 1 3.9144 0.3409 -1.3672 33 1 3.9438 -1.2831 -2.0983 34 1 4.6208 -3.2144 -1.8767 35 1 5.9533 -2.0342 -1.8759 36 1 7.5478 -3.8330 -3.1808 37 1 7.8255 -5.4898 -2.5929 38 1 6.2149 -5.0128 -3.1825 39 1 3.9143 0.3410 1.3675 40 1 3.9416 -1.2823 2.1002 41 1 1.9155 0.9886 2.5556 42 1 0.4154 0.0367 2.4454 43 1 2.4173 -1.5870 3.6000 44 1 1.7986 -1.1292 8.0465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132685575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:09 Heat of formation + Delta-G solvation = -88.278975 kcal Electronic energy + Delta-G solvation = -25869.964401 eV Core-core repulsion = 22143.401563 eV Total energy + Delta-G solvation = -3726.562838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52932 -38.29525 -37.19426 -36.18872 -35.27795 -33.91585 -32.11625 -31.21122 -30.22231 -29.74501 -28.17046 -25.79279 -23.61413 -22.99188 -21.19477 -20.49001 -19.49735 -18.95912 -17.88007 -17.42747 -16.94689 -16.61403 -16.17824 -15.58014 -15.50199 -14.94272 -14.51443 -14.22676 -14.06373 -13.86542 -13.69115 -13.62983 -13.56441 -13.19769 -13.02347 -12.67311 -12.53379 -12.24130 -12.17627 -12.08323 -11.91441 -11.80863 -11.41416 -11.29633 -11.15628 -10.95920 -10.91469 -10.68321 -10.46678 -10.29535 -10.10740 -9.94333 -9.51066 -8.87170 -8.76033 -7.17145 -5.70942 -3.06748 -0.44685 2.25838 2.40160 2.63696 3.43807 3.50467 3.55191 3.60129 3.64758 3.99801 4.22576 4.34144 4.44371 4.62484 4.64794 4.67256 4.67933 4.69129 4.94606 5.07586 5.13901 5.16485 5.42139 5.48964 5.52143 5.59258 5.63870 5.70253 5.76778 5.79507 5.94574 6.05242 6.19121 6.28167 6.29823 6.35543 6.68580 6.74482 7.10980 7.80182 8.04059 8.47961 9.26961 10.00018 10.18694 11.47159 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004394 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.300756 B = 6370.777137 C = 8246.319255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.131 4.131 5 C 0.103 3.897 6 N -0.600 5.600 7 C 0.538 3.462 8 O -0.523 6.523 9 C -0.659 4.659 10 S 2.453 3.547 11 C -0.663 4.663 12 O -0.920 6.920 13 O -0.918 6.918 14 C 0.115 3.885 15 C -0.108 4.108 16 H 0.076 0.924 17 C 0.163 3.837 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.008 3.992 22 N -0.934 5.934 23 Si 0.879 3.121 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.028 0.972 42 H 0.036 0.964 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -2.262 -30.097 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.332 5.332 7 C 0.323 3.677 8 O -0.400 6.400 9 C -0.786 4.786 10 S 2.629 3.371 11 C -0.812 4.812 12 O -0.917 6.917 13 O -0.915 6.915 14 C -0.006 4.006 15 C -0.128 4.128 16 H 0.094 0.906 17 C 0.036 3.964 18 N -0.403 5.403 19 C -0.376 4.376 20 H 0.108 0.892 21 C -0.188 4.188 22 N -0.582 5.582 23 Si 0.709 3.291 24 H -0.207 1.207 25 H -0.217 1.217 26 H -0.202 1.202 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.744 -2.665 -28.548 29.454 hybrid contribution 0.322 -0.732 -1.040 1.312 sum 7.066 -3.397 -29.588 30.609 Atomic orbital electron populations 1.21889 0.94633 1.02079 1.02001 1.21087 0.96264 0.99461 0.93526 0.90734 1.22009 0.94220 1.01846 0.98802 1.21857 0.95129 0.99558 0.85499 1.48029 1.42290 1.34528 1.08386 1.19109 0.79889 0.80297 0.88394 1.90915 1.57369 1.59268 1.32406 1.30902 1.19555 1.21389 1.06783 1.07283 0.76221 0.76345 0.77258 1.30408 1.12649 1.12972 1.25169 1.93607 1.47660 1.78849 1.71544 1.93617 1.74550 1.51810 1.71540 1.21866 0.94001 0.99601 0.85162 1.21808 0.94163 1.01055 0.95726 0.90606 1.20699 0.97424 0.94099 0.84199 1.42786 1.66163 1.28816 1.02572 1.19018 1.28710 1.08043 0.81815 0.89227 1.24642 1.00458 0.98623 0.95094 1.69701 1.50755 1.40733 0.97029 0.86633 0.80955 0.84378 0.77099 1.20744 1.21665 1.20190 0.91367 0.93067 0.92731 0.90489 0.91321 0.90741 0.89866 0.82371 0.82379 0.85301 0.84900 0.85287 0.90653 0.88093 0.95437 0.94604 0.80485 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.81 37.16 0.33 -1.22 16 2 C -0.08 -0.90 2.23 -90.58 -0.20 -1.10 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.03 5.36 -26.61 -0.14 -1.17 16 5 C 0.10 0.77 6.34 -3.71 -0.02 0.75 16 6 N -0.60 -7.40 2.97 -172.77 -0.51 -7.92 16 7 C 0.54 7.41 7.72 -10.99 -0.08 7.32 16 8 O -0.52 -10.10 15.04 2.56 0.04 -10.06 16 9 C -0.66 -4.66 4.64 36.01 0.17 -4.49 16 10 S 2.45 22.98 4.60 -107.50 -0.49 22.49 16 11 C -0.66 -2.23 10.62 101.05 1.07 -1.16 16 12 O -0.92 -12.79 17.94 -59.53 -1.07 -13.86 16 13 O -0.92 -13.09 17.95 -59.52 -1.07 -14.15 16 14 C 0.12 1.78 5.51 -3.71 -0.02 1.76 16 15 C -0.11 -1.60 1.92 -90.49 -0.17 -1.78 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.16 3.08 5.41 -4.04 -0.02 3.06 16 18 N -0.76 -18.54 5.18 -59.91 -0.31 -18.85 16 19 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 20 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -30.24 13.97 55.49 0.78 -29.46 16 23 Si 0.88 23.84 27.73 -169.99 -4.71 19.13 16 24 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 25 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 26 H -0.28 -7.24 6.52 56.52 0.37 -6.87 16 27 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 34 H 0.16 0.50 7.69 -51.92 -0.40 0.10 16 35 H 0.16 0.45 7.94 -51.92 -0.41 0.03 16 36 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 37 H 0.13 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.95 6.21 -51.93 -0.32 1.63 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 43 H 0.36 8.98 4.75 -40.82 -0.19 8.79 16 44 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -42.68 359.70 -8.24 -50.92 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.95 Total: 1.56 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.65 Total: -5.22 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.05 Total: -56.23 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -2.10 Total: -38.07 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.71 Total: 19.13 kcal Atomic # 16 Polarization: 22.98 SS G_CDS: -0.49 Total: 22.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -42.68 -8.24 -50.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132685575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.358 kcal (2) G-P(sol) polarization free energy of solvation -42.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds