Wall clock time and date at job start Tue Mar 31 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.45713 * 2 1 4 4 C 1.53038 * 109.45910 * 240.02387 * 2 1 3 5 5 C 1.53187 * 109.31606 * 301.35976 * 4 2 1 6 6 N 1.46926 * 108.77227 * 305.36475 * 5 4 2 7 7 C 1.34787 * 120.62918 * 233.33389 * 6 5 4 8 8 O 1.21282 * 119.99956 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99793 * 0.02562 * 7 6 5 10 10 S 1.81401 * 109.46943 * 180.02562 * 9 7 6 11 11 C 1.81395 * 101.92236 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57716 * 294.48851 * 10 9 7 13 13 O 1.42099 * 108.58195 * 65.50922 * 10 9 7 14 14 C 1.46924 * 118.73991 * 53.60881 * 6 5 4 15 15 C 1.53041 * 109.44835 * 119.96391 * 2 1 3 16 16 H 1.08999 * 109.49559 * 178.60241 * 15 2 1 17 17 C 1.52996 * 109.49784 * 298.66570 * 15 2 1 18 18 N 1.46496 * 109.47335 * 185.00028 * 17 15 2 19 19 C 1.36936 * 120.00780 * 180.02562 * 18 17 15 20 20 H 1.08012 * 119.99232 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00580 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00025 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00270 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47021 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47260 * 119.99244 * 23 21 19 26 26 H 1.48501 * 109.47030 * 240.00011 * 23 21 19 27 27 H 1.09006 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47619 * 299.97124 * 1 2 3 29 29 H 1.08996 * 109.47311 * 59.97504 * 1 2 3 30 30 H 1.08999 * 109.49677 * 181.40380 * 4 2 1 31 31 H 1.09001 * 109.52131 * 61.32787 * 4 2 1 32 32 H 1.09002 * 109.58471 * 185.57893 * 5 4 2 33 33 H 1.08996 * 109.58894 * 65.14790 * 5 4 2 34 34 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 35 35 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 36 36 H 1.09000 * 109.47358 * 59.99756 * 11 10 9 37 37 H 1.09000 * 109.47444 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.46977 * 299.99917 * 11 10 9 39 39 H 1.09003 * 109.58516 * 66.18182 * 14 6 5 40 40 H 1.09002 * 109.58479 * 186.60340 * 14 6 5 41 41 H 1.08994 * 109.47410 * 304.99995 * 17 15 2 42 42 H 1.08997 * 109.47235 * 65.00195 * 17 15 2 43 43 H 0.97005 * 120.00165 * 0.02562 * 18 17 15 44 44 H 0.97001 * 119.99747 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 1.4993 -2.1542 -1.2641 6 7 1.8620 -2.8089 0.0002 7 6 2.5105 -3.9905 0.0004 8 8 2.8040 -4.5210 1.0508 9 6 2.8708 -4.6524 -1.3046 10 16 3.7287 -6.2159 -0.9730 11 6 4.0586 -6.8252 -2.6494 12 8 4.9695 -5.9268 -0.3434 13 8 2.8199 -7.1055 -0.3391 14 6 1.4990 -2.1540 1.2644 15 6 2.0396 -0.7208 1.2502 16 1 3.1293 -0.7430 1.2386 17 6 1.5572 0.0200 2.4990 18 7 2.1425 -0.5992 3.6907 19 6 1.8516 -0.1028 4.9333 20 1 1.1909 0.7457 5.0347 21 6 2.4065 -0.6892 6.0624 22 7 3.2120 -1.7229 5.9387 23 14 2.0091 -0.0124 7.7576 24 1 1.0860 1.1432 7.6252 25 1 1.3634 -1.0712 8.5744 26 1 3.2624 0.4292 8.4205 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 3.1295 -0.7432 -1.2381 31 1 1.6964 -0.1938 -2.1400 32 1 1.9380 -2.7019 -2.0982 33 1 0.4144 -2.1346 -1.3673 34 1 1.9630 -4.8503 -1.8745 35 1 3.5234 -3.9939 -1.8780 36 1 4.6765 -6.1033 -3.1834 37 1 4.5824 -7.7795 -2.5927 38 1 3.1157 -6.9589 -3.1795 39 1 0.4141 -2.1344 1.3674 40 1 1.9375 -2.7017 2.0986 41 1 1.8652 1.0641 2.4437 42 1 0.4703 -0.0356 2.5573 43 1 2.7361 -1.3610 3.5996 44 1 3.6000 -2.1324 6.7278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132685576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:11 Heat of formation + Delta-G solvation = -88.424605 kcal Electronic energy + Delta-G solvation = -25865.428777 eV Core-core repulsion = 22138.859624 eV Total energy + Delta-G solvation = -3726.569153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49628 -38.27924 -37.08231 -36.07427 -35.02911 -33.64089 -31.99024 -31.01855 -29.91706 -29.49632 -27.60858 -25.42272 -24.74309 -23.16856 -21.26090 -20.27796 -18.93153 -18.33316 -17.67660 -16.99064 -16.79249 -16.45883 -16.11475 -15.44035 -15.33805 -14.98518 -14.95619 -14.35725 -13.81932 -13.69356 -13.56782 -13.54704 -13.51203 -13.03032 -12.79551 -12.66102 -12.48997 -12.12722 -12.06356 -12.04383 -11.71652 -11.38893 -11.23799 -11.14907 -10.99240 -10.85806 -10.79242 -10.68449 -10.32064 -10.22365 -10.07220 -9.85213 -9.57468 -8.81668 -8.58896 -6.84698 -5.66850 -2.97299 -0.33777 2.41832 2.51337 2.78560 3.49386 3.53783 3.56103 3.57107 3.75334 4.12865 4.32648 4.42821 4.54883 4.65146 4.73664 4.75660 4.78239 4.85838 5.10961 5.18150 5.21987 5.24491 5.48872 5.58587 5.59958 5.66628 5.76278 5.82147 5.89810 5.97000 6.12768 6.28128 6.30085 6.33727 6.50397 6.57089 6.76735 6.88487 7.27825 7.77017 7.97234 8.50427 9.61391 10.19033 10.52882 11.55317 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003775 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.805521 B = 7415.267334 C = 9114.350918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.599 5.599 7 C 0.536 3.464 8 O -0.517 6.517 9 C -0.659 4.659 10 S 2.455 3.545 11 C -0.664 4.664 12 O -0.917 6.917 13 O -0.920 6.920 14 C 0.117 3.883 15 C -0.103 4.103 16 H 0.075 0.925 17 C 0.161 3.839 18 N -0.734 5.734 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.927 5.927 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -3.925 -26.767 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.022 4.022 6 N -0.332 5.332 7 C 0.321 3.679 8 O -0.393 6.393 9 C -0.786 4.786 10 S 2.630 3.370 11 C -0.813 4.813 12 O -0.914 6.914 13 O -0.917 6.917 14 C -0.004 4.004 15 C -0.123 4.123 16 H 0.094 0.906 17 C 0.033 3.967 18 N -0.379 5.379 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.615 -4.473 -25.266 25.792 hybrid contribution -0.216 0.636 -0.139 0.686 sum -2.831 -3.837 -25.406 25.849 Atomic orbital electron populations 1.21995 0.95167 1.01976 1.01907 1.21083 0.96065 0.99497 0.93820 0.90662 1.21959 1.01283 0.94889 0.98708 1.21858 1.00706 0.93932 0.85672 1.48013 1.56724 1.20165 1.08294 1.19092 0.78592 0.81856 0.88338 1.90944 1.53131 1.62996 1.32232 1.30897 1.16365 1.24418 1.06926 1.07256 0.76087 0.76493 0.77150 1.30421 1.11959 1.13547 1.25380 1.93621 1.42318 1.83961 1.71474 1.93603 1.65442 1.61220 1.71419 1.21881 1.00250 0.93107 0.85203 1.21709 1.01052 0.94212 0.95318 0.90635 1.20664 0.95979 0.94717 0.85312 1.42437 1.56869 1.37733 1.00823 1.19220 1.23400 1.11084 0.83756 0.91223 1.24766 0.99978 0.98280 0.97826 1.69687 1.35241 1.24134 1.28474 0.86145 0.77365 0.77926 0.84882 1.20640 1.21856 1.21913 0.92467 0.91657 0.93125 0.91358 0.90695 0.90082 0.90674 0.82554 0.82473 0.85345 0.84964 0.85386 0.90917 0.87493 0.96141 0.95942 0.78062 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.11 37.16 0.30 -1.31 16 2 C -0.09 -0.98 2.71 -90.58 -0.25 -1.23 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.14 5.62 -26.62 -0.15 -1.29 16 5 C 0.10 0.86 5.87 -3.71 -0.02 0.84 16 6 N -0.60 -7.99 2.97 -172.77 -0.51 -8.50 16 7 C 0.54 7.92 7.72 -10.98 -0.08 7.83 16 8 O -0.52 -10.61 15.04 2.55 0.04 -10.57 16 9 C -0.66 -5.22 4.64 36.00 0.17 -5.05 16 10 S 2.45 24.80 4.60 -107.50 -0.49 24.30 16 11 C -0.66 -2.66 10.62 101.05 1.07 -1.58 16 12 O -0.92 -13.82 17.95 -59.54 -1.07 -14.89 16 13 O -0.92 -13.46 17.95 -59.52 -1.07 -14.52 16 14 C 0.12 1.94 5.05 -3.71 -0.02 1.92 16 15 C -0.10 -1.65 2.15 -90.50 -0.19 -1.85 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 17 C 0.16 3.21 5.19 -4.05 -0.02 3.19 16 18 N -0.73 -19.10 5.38 -59.92 -0.32 -19.42 16 19 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -29.44 13.06 55.49 0.72 -28.72 16 23 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H 0.06 0.60 4.98 -51.93 -0.26 0.34 16 28 H 0.06 0.78 6.57 -51.93 -0.34 0.43 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.42 5.94 -51.93 -0.31 0.11 16 33 H 0.08 0.56 6.69 -51.93 -0.35 0.22 16 34 H 0.16 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.16 0.64 7.69 -51.93 -0.40 0.24 16 36 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 37 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 39 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 40 H 0.11 2.27 6.22 -51.93 -0.32 1.95 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 43 H 0.39 10.80 6.90 -40.82 -0.28 10.52 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -41.94 356.76 -8.51 -50.46 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.72 Total: 4.52 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.56 Total: -6.12 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.11 Total: -56.64 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -2.10 Total: -39.98 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -0.49 Total: 24.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -41.94 -8.51 -50.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132685576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.969 kcal (2) G-P(sol) polarization free energy of solvation -41.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds