Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21282 * 120.00258 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99707 * 359.97438 * 7 6 5 10 10 S 1.81400 * 109.46949 * 179.97438 * 9 7 6 11 11 C 1.81405 * 101.92179 * 180.02562 * 10 9 7 12 12 O 1.42103 * 108.58002 * 294.48985 * 10 9 7 13 13 O 1.42097 * 108.57788 * 65.51442 * 10 9 7 14 14 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 15 15 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 16 16 H 1.08995 * 109.49919 * 298.61631 * 15 2 1 17 17 C 1.53006 * 109.49435 * 58.68107 * 15 2 1 18 18 N 1.46495 * 109.46960 * 185.00197 * 17 15 2 19 19 C 1.36936 * 119.99962 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00066 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00067 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99963 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47150 * 89.99707 * 23 21 19 25 25 H 1.48494 * 109.47551 * 209.99975 * 23 21 19 26 26 H 1.48501 * 109.47141 * 330.00183 * 23 21 19 27 27 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 29 29 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 30 30 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 31 31 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 32 32 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 33 33 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 34 34 H 1.08996 * 109.47770 * 299.99990 * 9 7 6 35 35 H 1.09003 * 109.47015 * 60.00571 * 9 7 6 36 36 H 1.08993 * 109.47087 * 59.99968 * 11 10 9 37 37 H 1.08997 * 109.46980 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46527 * 300.00052 * 11 10 9 39 39 H 1.09003 * 109.59222 * 186.59958 * 14 6 5 40 40 H 1.09006 * 109.70276 * 66.24587 * 14 6 5 41 41 H 1.09001 * 109.46991 * 304.99842 * 17 15 2 42 42 H 1.09000 * 109.47170 * 64.99839 * 17 15 2 43 43 H 0.97002 * 120.00280 * 359.97438 * 18 17 15 44 44 H 0.96999 * 119.99848 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3627 -2.7129 -1.0497 9 6 5.4604 -2.8225 1.3057 10 16 6.6419 -4.1585 0.9744 11 6 7.1008 -4.6773 2.6510 12 8 5.9509 -5.2279 0.3433 13 8 7.7872 -3.6036 0.3423 14 6 3.5714 -0.6891 -1.2639 15 6 2.0399 -0.7210 -1.2500 16 1 1.6971 -1.7556 -1.2385 17 6 1.5031 -0.0189 -2.4990 18 7 1.8919 -0.7773 -3.6906 19 6 1.5215 -0.3373 -4.9333 20 1 0.9424 0.5685 -5.0350 21 6 1.8904 -1.0557 -6.0624 22 7 1.5340 -0.6330 -7.2568 23 14 2.8927 -2.6221 -5.8866 24 1 1.9769 -3.7833 -5.7513 25 1 3.7455 -2.8018 -7.0889 26 1 3.7526 -2.5268 -4.6796 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6569 -0.2207 2.1399 31 1 1.6973 -1.7556 1.2384 32 1 3.9411 -1.2850 2.0988 33 1 3.9142 0.3405 1.3677 34 1 5.9523 -2.0354 1.8771 35 1 4.6195 -3.2152 1.8774 36 1 6.2114 -5.0150 3.1830 37 1 7.8222 -5.4923 2.5945 38 1 7.5447 -3.8358 3.1829 39 1 3.9416 -1.2851 -2.0981 40 1 3.9145 0.3401 -1.3695 41 1 0.4160 0.0393 -2.4442 42 1 1.9184 0.9872 -2.5571 43 1 2.4124 -1.5908 -3.5993 44 1 1.7921 -1.1348 -8.0458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132685577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -88.299227 kcal Electronic energy + Delta-G solvation = -25872.003812 eV Core-core repulsion = 22145.440096 eV Total energy + Delta-G solvation = -3726.563716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52474 -38.29158 -37.19391 -36.18841 -35.27605 -33.91343 -32.11370 -31.21004 -30.22161 -29.74429 -28.16843 -25.79058 -23.60973 -22.98827 -21.19346 -20.48783 -19.49406 -18.95733 -17.87870 -17.42456 -16.94450 -16.61284 -16.17505 -15.57715 -15.49974 -14.94122 -14.51072 -14.22234 -14.06509 -13.86424 -13.69054 -13.62959 -13.56254 -13.19546 -13.01919 -12.67151 -12.54245 -12.24068 -12.17570 -12.06918 -11.91526 -11.79967 -11.41175 -11.29807 -11.15657 -10.96418 -10.91010 -10.67998 -10.46037 -10.27530 -10.10480 -9.94762 -9.50742 -8.87819 -8.75129 -7.17084 -5.70828 -3.06626 -0.44584 2.26256 2.40287 2.64063 3.44065 3.49678 3.56731 3.60402 3.64860 4.00104 4.22703 4.34225 4.44582 4.62728 4.64915 4.67438 4.68129 4.69263 4.94876 5.07729 5.14033 5.16569 5.42528 5.49517 5.52223 5.58857 5.64267 5.70814 5.77004 5.79303 5.95438 6.05429 6.19273 6.28881 6.30037 6.35973 6.68744 6.74461 7.11522 7.80774 8.04191 8.48056 9.27094 10.00126 10.18799 11.47264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.004392 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.783276 B = 6373.302500 C = 8247.430407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.131 4.131 5 C 0.102 3.898 6 N -0.600 5.600 7 C 0.538 3.462 8 O -0.522 6.522 9 C -0.659 4.659 10 S 2.453 3.547 11 C -0.663 4.663 12 O -0.918 6.918 13 O -0.920 6.920 14 C 0.114 3.886 15 C -0.108 4.108 16 H 0.076 0.924 17 C 0.163 3.837 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.008 3.992 22 N -0.934 5.934 23 Si 0.878 3.122 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.271 1.271 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -2.262 30.105 30.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.332 5.332 7 C 0.323 3.677 8 O -0.399 6.399 9 C -0.786 4.786 10 S 2.629 3.371 11 C -0.812 4.812 12 O -0.915 6.915 13 O -0.917 6.917 14 C -0.007 4.007 15 C -0.127 4.127 16 H 0.094 0.906 17 C 0.036 3.964 18 N -0.403 5.403 19 C -0.376 4.376 20 H 0.108 0.892 21 C -0.188 4.188 22 N -0.582 5.582 23 Si 0.707 3.293 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.774 -2.662 28.557 29.469 hybrid contribution 0.327 -0.722 1.030 1.299 sum 7.100 -3.384 29.586 30.614 Atomic orbital electron populations 1.21888 0.94631 1.02082 1.02004 1.21089 0.96261 0.99460 0.93533 0.90746 1.22013 0.94234 1.01842 0.98799 1.21858 0.95136 0.99539 0.85521 1.48028 1.42318 1.34506 1.08381 1.19113 0.79900 0.80315 0.88391 1.90921 1.57325 1.59254 1.32399 1.30900 1.19550 1.21391 1.06785 1.07279 0.76220 0.76342 0.77256 1.30406 1.12644 1.12971 1.25174 1.93616 1.74548 1.51815 1.71550 1.93606 1.47654 1.78860 1.71540 1.21877 0.93995 0.99638 0.85174 1.21805 0.94170 1.01038 0.95721 0.90608 1.20700 0.97446 0.94069 0.84210 1.42784 1.66153 1.28806 1.02585 1.19017 1.28694 1.08016 0.81866 0.89238 1.24641 1.00439 0.98646 0.95090 1.69700 1.50830 1.40639 0.97048 0.86651 0.80654 0.84522 0.77444 1.21056 1.21604 1.19697 0.92722 0.93067 0.91370 0.90495 0.91320 0.89873 0.90737 0.82386 0.82373 0.85285 0.84903 0.85309 0.88003 0.90684 0.94559 0.95497 0.80483 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.82 37.16 0.33 -1.22 16 2 C -0.08 -0.90 2.23 -90.57 -0.20 -1.10 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.03 5.36 -26.61 -0.14 -1.17 16 5 C 0.10 0.77 6.34 -3.71 -0.02 0.75 16 6 N -0.60 -7.44 2.97 -172.77 -0.51 -7.95 16 7 C 0.54 7.43 7.72 -10.99 -0.08 7.35 16 8 O -0.52 -10.15 15.04 2.54 0.04 -10.11 16 9 C -0.66 -4.68 4.64 36.00 0.17 -4.51 16 10 S 2.45 23.02 4.60 -107.50 -0.49 22.52 16 11 C -0.66 -2.24 10.62 101.05 1.07 -1.16 16 12 O -0.92 -13.09 17.95 -59.52 -1.07 -14.16 16 13 O -0.92 -12.81 17.95 -59.54 -1.07 -13.88 16 14 C 0.11 1.78 5.52 -3.71 -0.02 1.76 16 15 C -0.11 -1.60 1.92 -90.50 -0.17 -1.77 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.16 3.08 5.41 -4.04 -0.02 3.06 16 18 N -0.76 -18.51 5.18 -59.91 -0.31 -18.82 16 19 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -30.24 13.97 55.49 0.78 -29.47 16 23 Si 0.88 23.75 27.73 -169.99 -4.71 19.04 16 24 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.29 -7.91 7.11 56.52 0.40 -7.50 16 26 H -0.27 -7.20 6.52 56.52 0.37 -6.83 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.80 6.29 -51.92 -0.33 0.48 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.16 0.45 7.94 -51.93 -0.41 0.04 16 35 H 0.16 0.50 7.69 -51.92 -0.40 0.10 16 36 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 39 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.68 6.14 -51.93 -0.32 0.37 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.36 8.96 4.76 -40.82 -0.19 8.76 16 44 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -42.71 359.71 -8.24 -50.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.95 Total: 1.66 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.65 Total: -5.20 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.05 Total: -56.24 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.10 Total: -38.15 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.71 Total: 19.04 kcal Atomic # 16 Polarization: 23.02 SS G_CDS: -0.49 Total: 22.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -42.71 -8.24 -50.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132685577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.352 kcal (2) G-P(sol) polarization free energy of solvation -42.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds