Wall clock time and date at job start Tue Mar 31 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 S 1.81402 * 109.46926 * 120.00323 * 2 1 3 5 5 O 1.42100 * 108.57481 * 305.51240 * 4 2 1 6 6 O 1.42097 * 108.57785 * 174.48934 * 4 2 1 7 7 C 1.81396 * 101.92543 * 59.99904 * 4 2 1 8 8 C 1.50692 * 109.47487 * 179.97438 * 7 4 2 9 9 O 1.21289 * 119.99836 * 0.02562 * 8 7 4 10 10 N 1.34780 * 120.00414 * 180.02562 * 8 7 4 11 11 C 1.47426 * 125.64645 * 0.02590 * 10 8 7 12 12 C 1.54912 * 104.83261 * 203.86243 * 11 10 8 13 13 C 1.55155 * 101.57968 * 322.99067 * 12 11 10 14 14 H 1.08996 * 110.72196 * 277.13505 * 13 12 11 15 15 N 1.46498 * 110.71914 * 153.86706 * 13 12 11 16 16 C 1.36933 * 120.00221 * 86.44979 * 15 13 12 17 17 H 1.07995 * 120.00164 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99936 * 179.97438 * 16 15 13 19 19 N 1.31610 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99764 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47533 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47159 * 120.00136 * 20 18 16 23 23 H 1.48502 * 109.47080 * 240.00120 * 20 18 16 24 24 C 1.47024 * 125.64847 * 179.71552 * 10 8 7 25 25 H 1.08995 * 109.88316 * 298.62177 * 24 10 8 26 26 C 1.52998 * 109.88215 * 59.79117 * 24 10 8 27 27 H 1.08997 * 109.47386 * 299.99764 * 1 2 3 28 28 H 1.08999 * 109.47073 * 60.00411 * 1 2 3 29 29 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 239.99654 * 2 1 3 31 31 H 1.09000 * 109.46641 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47314 * 300.00269 * 3 2 1 33 33 H 1.09003 * 109.47090 * 60.00293 * 3 2 1 34 34 H 1.08999 * 109.47248 * 59.99887 * 7 4 2 35 35 H 1.09007 * 109.47174 * 300.00514 * 7 4 2 36 36 H 1.09002 * 110.36518 * 322.69812 * 11 10 8 37 37 H 1.08995 * 110.36673 * 84.90922 * 11 10 8 38 38 H 1.08997 * 111.00012 * 81.06132 * 12 11 10 39 39 H 1.08992 * 111.00287 * 204.87830 * 12 11 10 40 40 H 0.97001 * 119.99810 * 266.45323 * 15 13 12 41 41 H 0.97002 * 120.00649 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.47447 * 58.54673 * 26 24 10 43 43 H 1.08999 * 109.46933 * 178.54374 * 26 24 10 44 44 H 1.09001 * 109.47522 * 298.54354 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.5479 -0.2495 2.6248 6 8 3.5496 -0.9572 1.3991 7 6 1.4229 -2.5109 1.2747 8 6 1.8280 -3.3804 2.4369 9 8 2.5277 -2.9275 3.3181 10 7 1.4129 -4.6612 2.4973 11 6 0.5638 -5.3371 1.4995 12 6 -0.1128 -6.4956 2.2741 13 6 1.0300 -6.9456 3.2222 14 1 1.7117 -7.6241 2.7095 15 7 0.4855 -7.5705 4.4301 16 6 0.1901 -8.9076 4.4356 17 1 0.3589 -9.5016 3.5496 18 6 -0.3254 -9.4999 5.5804 19 7 -0.5306 -8.7762 6.6603 20 14 -0.7276 -11.3240 5.5880 21 1 -0.4074 -11.9072 4.2604 22 1 0.0777 -12.0041 6.6341 23 1 -2.1724 -11.5111 5.8759 24 6 1.7372 -5.6176 3.5658 25 1 2.8152 -5.7724 3.6102 26 6 1.2286 -5.0896 4.9087 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.7894 -2.9509 0.3473 35 1 0.3360 -2.4371 1.2371 36 1 -0.1882 -4.6492 1.1130 37 1 1.1735 -5.7282 0.6851 38 1 -0.9722 -6.1372 2.8407 39 1 -0.4010 -7.3011 1.5988 40 1 0.3341 -7.0371 5.2260 41 1 -0.8912 -9.1899 7.4602 42 1 0.1514 -4.9320 4.8528 43 1 1.4495 -5.8151 5.6916 44 1 1.7225 -4.1454 5.1386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180160869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:54 Heat of formation + Delta-G solvation = -84.032293 kcal Electronic energy + Delta-G solvation = -25659.438926 eV Core-core repulsion = 21933.060238 eV Total energy + Delta-G solvation = -3726.378688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.20683 -37.75092 -37.16503 -36.15113 -35.49952 -34.31055 -32.12830 -30.90371 -30.50640 -28.64966 -27.66185 -25.30202 -23.65170 -23.10795 -22.68020 -20.09278 -18.88793 -18.79973 -17.78993 -17.48827 -16.81072 -16.49509 -16.26261 -15.77049 -15.19030 -14.94148 -14.67678 -14.35163 -13.84411 -13.77836 -13.56916 -13.41790 -13.21430 -12.84672 -12.73287 -12.58571 -12.18643 -12.14614 -12.11180 -11.94791 -11.90136 -11.88281 -11.62514 -11.31804 -11.24205 -11.01382 -10.87348 -10.56601 -10.52253 -10.30876 -10.06533 -9.95967 -9.69193 -9.00828 -8.59602 -7.07864 -5.85834 -3.16266 -0.37587 2.43229 2.47767 2.80603 3.38028 3.43516 3.46178 3.51676 3.67503 4.05627 4.11853 4.19062 4.50933 4.56143 4.63028 4.77161 4.91078 4.97709 5.05563 5.11746 5.12803 5.25237 5.25517 5.44675 5.48168 5.53877 5.54095 5.56781 5.72722 5.93197 6.02788 6.15682 6.22138 6.46372 6.50029 6.60688 6.75641 6.92542 7.50407 7.62421 7.97255 8.32290 9.44176 9.98408 10.33362 11.36547 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.002763 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.981997 B =10133.083514 C =10397.186404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.584 4.584 3 C -0.143 4.143 4 S 2.451 3.549 5 O -0.915 6.915 6 O -0.921 6.921 7 C -0.656 4.656 8 C 0.554 3.446 9 O -0.532 6.532 10 N -0.597 5.597 11 C 0.094 3.906 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.065 0.935 15 N -0.717 5.717 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.126 3.874 25 H 0.077 0.923 26 C -0.162 4.162 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.392 0.608 41 H 0.257 0.743 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 16.943 -18.407 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.692 4.692 3 C -0.201 4.201 4 S 2.627 3.373 5 O -0.912 6.912 6 O -0.918 6.918 7 C -0.784 4.784 8 C 0.339 3.661 9 O -0.410 6.410 10 N -0.330 5.330 11 C -0.030 4.030 12 C -0.196 4.196 13 C 0.062 3.938 14 H 0.083 0.917 15 N -0.361 5.361 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.023 3.977 25 H 0.095 0.905 26 C -0.220 4.220 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.230 0.770 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.863 17.341 -17.254 24.533 hybrid contribution -1.014 -1.320 -0.696 1.804 sum 0.849 16.021 -17.949 24.074 Atomic orbital electron populations 1.21762 0.89922 1.03690 1.05210 1.30196 1.07099 1.10265 1.21683 1.21629 1.02202 0.91505 1.04739 1.07664 0.76035 0.76556 0.77033 1.93574 1.79190 1.73638 1.44833 1.93574 1.26485 1.85272 1.86457 1.30879 1.15817 1.23877 1.07788 1.18616 0.80522 0.81486 0.85436 1.90848 1.38264 1.72351 1.39561 1.48446 1.50032 1.09677 1.24838 1.22483 0.93339 0.95462 0.91674 1.23578 1.00559 0.96102 0.99338 1.21178 0.92693 0.90409 0.89503 0.91734 1.42689 1.75374 1.07734 1.10278 1.19266 1.35712 0.85148 0.97559 0.90990 1.24769 1.01795 0.98133 0.95951 1.69663 1.50532 1.34921 1.02584 0.86103 0.77660 0.84953 0.77314 1.20526 1.21786 1.21835 1.21964 0.99800 0.88801 0.87166 0.90508 1.22041 1.01445 1.01957 0.96591 0.90111 0.90108 0.91189 0.84531 0.90710 0.89947 0.90625 0.82524 0.82384 0.91211 0.91227 0.90464 0.90346 0.76998 0.93347 0.92321 0.89897 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.94 37.16 0.33 -0.36 16 2 C -0.58 -3.48 3.31 -26.73 -0.09 -3.57 16 3 C -0.14 -0.87 9.20 37.16 0.34 -0.52 16 4 S 2.45 27.33 3.48 -107.50 -0.37 26.95 16 5 O -0.92 -13.63 17.76 -59.52 -1.06 -14.68 16 6 O -0.92 -13.71 17.94 -59.54 -1.07 -14.78 16 7 C -0.66 -6.15 4.85 36.00 0.17 -5.98 16 8 C 0.55 8.51 7.65 -10.99 -0.08 8.43 16 9 O -0.53 -10.38 14.53 2.55 0.04 -10.35 16 10 N -0.60 -8.95 3.08 -163.02 -0.50 -9.45 16 11 C 0.09 1.10 6.69 -2.53 -0.02 1.09 16 12 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 13 C 0.17 3.24 3.46 -66.10 -0.23 3.01 16 14 H 0.06 1.19 8.12 -51.93 -0.42 0.76 16 15 N -0.72 -16.99 5.02 -51.65 -0.26 -17.25 16 16 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 20 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.13 2.22 3.48 -66.95 -0.23 1.98 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 26 C -0.16 -3.08 7.95 37.16 0.30 -2.79 16 27 H 0.08 0.43 8.06 -51.93 -0.42 0.02 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.20 6.56 -51.93 -0.34 -0.14 16 30 H 0.14 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.16 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.16 0.95 6.58 -51.92 -0.34 0.60 16 36 H 0.07 0.62 7.49 -51.93 -0.39 0.23 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.39 9.87 4.93 -40.82 -0.20 9.66 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 43 H 0.08 1.70 6.72 -51.93 -0.35 1.35 16 44 H 0.06 1.23 6.75 -51.93 -0.35 0.88 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -36.99 364.34 -8.96 -45.94 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.00 Total: 6.26 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.04 Total: -53.24 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -2.09 Total: -39.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 27.33 SS G_CDS: -0.37 Total: 26.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.99 -8.96 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180160869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.090 kcal (2) G-P(sol) polarization free energy of solvation -36.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds