Wall clock time and date at job start Tue Mar 31 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47528 * 2 1 4 4 C 1.53000 * 109.47171 * 239.99583 * 2 1 3 5 5 S 1.81400 * 109.47108 * 65.00161 * 4 2 1 6 6 C 1.81396 * 101.92130 * 179.97438 * 5 4 2 7 7 O 1.42095 * 108.57664 * 294.49038 * 5 4 2 8 8 O 1.42101 * 108.57476 * 65.51294 * 5 4 2 9 9 C 1.50708 * 109.46911 * 119.99801 * 2 1 3 10 10 O 1.21279 * 119.99754 * 119.99713 * 9 2 1 11 11 N 1.34772 * 119.99974 * 299.99881 * 9 2 1 12 12 C 1.47431 * 125.65004 * 359.95659 * 11 9 2 13 13 C 1.54901 * 104.83251 * 204.16492 * 12 11 9 14 14 C 1.55152 * 101.58450 * 322.99056 * 13 12 11 15 15 H 1.09006 * 110.87538 * 277.06924 * 14 13 12 16 16 N 1.46504 * 110.72302 * 153.86381 * 14 13 12 17 17 C 1.36943 * 119.99781 * 91.47975 * 16 14 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 14 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 C 1.47026 * 125.64938 * 180.02562 * 11 9 2 26 26 H 1.09002 * 110.00805 * 298.39723 * 25 11 9 27 27 C 1.53000 * 109.87832 * 59.48674 * 25 11 9 28 28 H 1.09005 * 109.46822 * 60.00056 * 1 2 3 29 29 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47113 * 300.00385 * 1 2 3 31 31 H 1.09001 * 109.46959 * 185.00304 * 4 2 1 32 32 H 1.08997 * 109.46934 * 304.99978 * 4 2 1 33 33 H 1.09006 * 109.47108 * 60.00147 * 6 5 4 34 34 H 1.09003 * 109.47338 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47524 * 300.00338 * 6 5 4 36 36 H 1.09000 * 110.36230 * 323.00627 * 12 11 9 37 37 H 1.08998 * 110.36493 * 85.21631 * 12 11 9 38 38 H 1.09004 * 111.00253 * 204.91609 * 13 12 11 39 39 H 1.08999 * 111.00809 * 81.06713 * 13 12 11 40 40 H 0.97000 * 120.00410 * 271.48301 * 16 14 13 41 41 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.46537 * 177.80899 * 27 25 11 43 43 H 1.08996 * 109.47552 * 297.80762 * 27 25 11 44 44 H 1.08997 * 109.47143 * 57.81485 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5602 0.2154 -2.7266 6 6 2.2552 -0.8022 -4.0577 7 8 0.1434 0.1966 -2.8342 8 8 2.2383 1.4641 -2.7109 9 6 2.0323 -0.7104 1.2306 10 8 2.7295 -1.6965 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 0.8717 0.9327 2.7337 13 6 1.2967 1.3928 4.1504 14 6 1.5403 0.0343 4.8592 15 1 0.6040 -0.3852 5.2273 16 7 2.5037 0.1854 5.9525 17 6 2.0634 0.4584 7.2202 18 1 1.0060 0.5627 7.4138 19 6 2.9765 0.6074 8.2550 20 7 4.2651 0.4809 8.0189 21 14 2.3764 0.9874 9.9826 22 1 2.1326 -0.2827 10.7125 23 1 3.4056 1.7813 10.7007 24 1 1.1139 1.7657 9.9081 25 6 2.1266 -0.8428 3.7328 26 1 1.7422 -1.8593 3.8166 27 6 3.6538 -0.8550 3.8239 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1264 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 1.8146 -1.7986 -4.0212 34 1 2.0331 -0.3422 -5.0206 35 1 3.3352 -0.8778 -3.9312 36 1 1.0703 1.7179 2.0042 37 1 -0.1843 0.6628 2.7215 38 1 0.4957 1.9492 4.6371 39 1 2.2123 1.9828 4.1114 40 1 3.4534 0.0922 5.7786 41 1 4.9031 0.5846 8.7421 42 1 3.9569 -1.2598 4.7896 43 1 4.0605 -1.4761 3.0258 44 1 4.0321 0.1621 3.7214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180242267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:51 Heat of formation + Delta-G solvation = -81.655000 kcal Electronic energy + Delta-G solvation = -25666.775637 eV Core-core repulsion = 21940.500037 eV Total energy + Delta-G solvation = -3726.275601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.32313 -37.78772 -37.33452 -36.42257 -34.95970 -34.14118 -31.62966 -30.73758 -30.15773 -29.00168 -27.65265 -25.24841 -24.52666 -23.27505 -21.98774 -19.70353 -19.20559 -18.71185 -17.71906 -17.40019 -16.61373 -16.46643 -16.07357 -15.70759 -15.39859 -14.93117 -14.49969 -13.96801 -13.85438 -13.66093 -13.61505 -13.50895 -13.26693 -13.03672 -12.74137 -12.48182 -12.32253 -12.20141 -12.07033 -11.86772 -11.65986 -11.53949 -11.51408 -11.37607 -11.24546 -11.01159 -10.87259 -10.81482 -10.46652 -10.24034 -10.03115 -9.75086 -9.50508 -8.98223 -8.45844 -7.06123 -5.84675 -3.14696 -0.40707 2.35134 2.67786 2.98385 3.31419 3.39407 3.44886 3.46427 3.63993 4.07200 4.32985 4.36448 4.44841 4.52664 4.58227 4.84483 4.99126 5.07569 5.18660 5.21340 5.27423 5.37683 5.48189 5.51338 5.57958 5.58638 5.67763 5.78572 5.97721 6.00710 6.08823 6.19288 6.28407 6.51910 6.53339 6.67140 6.79582 6.94711 7.63377 7.69613 8.24319 8.33808 9.45438 10.00019 10.34916 11.37716 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036282 B = 0.002662 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.542425 B =10517.234784 C =10797.076121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.110 0.890 4 C -0.590 4.590 5 S 2.419 3.581 6 C -0.656 4.656 7 O -0.935 6.935 8 O -0.938 6.938 9 C 0.539 3.461 10 O -0.542 6.542 11 N -0.605 5.605 12 C 0.092 3.908 13 C -0.155 4.155 14 C 0.174 3.826 15 H 0.066 0.934 16 N -0.716 5.716 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.072 0.928 27 C -0.159 4.159 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.391 0.609 41 H 0.257 0.743 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -1.806 -22.838 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.117 4.117 3 H 0.128 0.872 4 C -0.719 4.719 5 S 2.601 3.399 6 C -0.805 4.805 7 O -0.932 6.932 8 O -0.935 6.935 9 C 0.325 3.675 10 O -0.419 6.419 11 N -0.338 5.338 12 C -0.031 4.031 13 C -0.196 4.196 14 C 0.062 3.938 15 H 0.084 0.916 16 N -0.359 5.359 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.023 3.977 26 H 0.090 0.910 27 C -0.217 4.217 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.229 0.771 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.558 -1.545 -22.851 23.824 hybrid contribution 0.564 -0.541 0.946 1.227 sum -5.994 -2.085 -21.905 22.806 Atomic orbital electron populations 1.22439 0.91587 1.04619 1.05522 1.20925 0.98491 1.00670 0.91623 0.87196 1.30199 1.12920 1.14240 1.14559 1.07890 0.76167 0.77261 0.78579 1.30249 1.14094 1.16724 1.19462 1.93583 1.27336 1.86903 1.85421 1.93616 1.76236 1.37785 1.85909 1.19756 0.80221 0.84428 0.83056 1.90665 1.38489 1.26640 1.86132 1.48546 1.50515 1.29484 1.05253 1.22547 0.94537 0.87197 0.98799 1.23582 1.02162 1.00990 0.92910 1.21184 0.93747 0.91569 0.87329 0.91572 1.42665 1.05137 1.84478 1.03649 1.19248 0.92452 1.40914 0.85047 0.91031 1.24760 0.95275 1.02414 0.98212 1.69654 1.00122 1.56219 1.31852 0.86172 0.77482 0.77804 0.84578 1.21656 1.21758 1.20706 1.21912 0.96155 0.97283 0.82368 0.91044 1.22008 0.94540 1.02208 1.02932 0.89072 0.91080 0.90060 0.84077 0.84225 0.85180 0.85221 0.85179 0.91094 0.91145 0.90436 0.90616 0.77116 0.93345 0.90086 0.92236 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.64 37.16 0.32 -1.42 16 2 C -0.09 -1.00 2.07 -91.77 -0.19 -1.19 16 3 H 0.11 1.06 7.85 -51.93 -0.41 0.65 16 4 C -0.59 -4.65 4.61 37.16 0.17 -4.48 16 5 S 2.42 17.27 5.15 -107.50 -0.55 16.72 16 6 C -0.66 -2.44 10.62 101.05 1.07 -1.36 16 7 O -0.94 -9.20 15.46 -57.83 -0.89 -10.09 16 8 O -0.94 -10.28 18.10 -57.83 -1.05 -11.32 16 9 C 0.54 7.78 7.00 -10.98 -0.08 7.70 16 10 O -0.54 -9.33 14.83 5.56 0.08 -9.25 16 11 N -0.60 -8.92 3.08 -163.01 -0.50 -9.43 16 12 C 0.09 1.16 5.14 -2.53 -0.01 1.14 16 13 C -0.16 -2.45 6.77 -24.59 -0.17 -2.61 16 14 C 0.17 3.25 3.49 -66.10 -0.23 3.02 16 15 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 16 N -0.72 -17.00 4.94 -51.65 -0.26 -17.26 16 17 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 2.19 3.48 -66.95 -0.23 1.96 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 C -0.16 -2.94 7.93 37.16 0.29 -2.65 16 28 H 0.09 0.84 5.40 -51.93 -0.28 0.56 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.71 4.99 -51.93 -0.26 0.45 16 31 H 0.14 1.01 7.95 -51.92 -0.41 0.60 16 32 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.75 7.36 -51.93 -0.38 0.37 16 37 H 0.07 0.75 7.07 -51.93 -0.37 0.38 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.39 9.85 5.06 -40.82 -0.21 9.64 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 43 H 0.06 1.09 6.76 -51.93 -0.35 0.74 16 44 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -35.80 357.29 -8.16 -43.96 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.78 Total: 8.09 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 0.70 Total: -6.93 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.03 Total: -53.28 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.86 Total: -30.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.55 Total: 16.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.80 -8.16 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180242267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.697 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds