Wall clock time and date at job start Tue Mar 31 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47528 * 2 1 4 4 C 1.53000 * 109.47171 * 239.99583 * 2 1 3 5 5 S 1.81400 * 109.47108 * 65.00161 * 4 2 1 6 6 C 1.81396 * 101.92130 * 179.97438 * 5 4 2 7 7 O 1.42095 * 108.57664 * 294.49038 * 5 4 2 8 8 O 1.42101 * 108.57476 * 65.51294 * 5 4 2 9 9 C 1.50708 * 109.46911 * 119.99801 * 2 1 3 10 10 O 1.21279 * 119.99754 * 119.99713 * 9 2 1 11 11 N 1.34772 * 119.99974 * 299.99881 * 9 2 1 12 12 C 1.47431 * 125.65004 * 359.95659 * 11 9 2 13 13 C 1.54901 * 104.83251 * 204.16492 * 12 11 9 14 14 C 1.55152 * 101.58450 * 322.99056 * 13 12 11 15 15 H 1.09006 * 110.87538 * 277.06924 * 14 13 12 16 16 N 1.46504 * 110.72302 * 153.86381 * 14 13 12 17 17 C 1.36943 * 119.99781 * 91.47975 * 16 14 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 14 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 C 1.47026 * 125.64938 * 180.02562 * 11 9 2 26 26 H 1.09002 * 110.00805 * 298.39723 * 25 11 9 27 27 C 1.53000 * 109.87832 * 59.48674 * 25 11 9 28 28 H 1.09005 * 109.46822 * 60.00056 * 1 2 3 29 29 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47113 * 300.00385 * 1 2 3 31 31 H 1.09001 * 109.46959 * 185.00304 * 4 2 1 32 32 H 1.08997 * 109.46934 * 304.99978 * 4 2 1 33 33 H 1.09006 * 109.47108 * 60.00147 * 6 5 4 34 34 H 1.09003 * 109.47338 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47524 * 300.00338 * 6 5 4 36 36 H 1.09000 * 110.36230 * 323.00627 * 12 11 9 37 37 H 1.08998 * 110.36493 * 85.21631 * 12 11 9 38 38 H 1.09004 * 111.00253 * 204.91609 * 13 12 11 39 39 H 1.08999 * 111.00809 * 81.06713 * 13 12 11 40 40 H 0.97000 * 120.00410 * 271.48301 * 16 14 13 41 41 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.46537 * 177.80899 * 27 25 11 43 43 H 1.08996 * 109.47552 * 297.80762 * 27 25 11 44 44 H 1.08997 * 109.47143 * 57.81485 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5602 0.2154 -2.7266 6 6 2.2552 -0.8022 -4.0577 7 8 0.1434 0.1966 -2.8342 8 8 2.2383 1.4641 -2.7109 9 6 2.0323 -0.7104 1.2306 10 8 2.7295 -1.6965 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 0.8717 0.9327 2.7337 13 6 1.2967 1.3928 4.1504 14 6 1.5403 0.0343 4.8592 15 1 0.6040 -0.3852 5.2273 16 7 2.5037 0.1854 5.9525 17 6 2.0634 0.4584 7.2202 18 1 1.0060 0.5627 7.4138 19 6 2.9765 0.6074 8.2550 20 7 4.2651 0.4809 8.0189 21 14 2.3764 0.9874 9.9826 22 1 2.1326 -0.2827 10.7125 23 1 3.4056 1.7813 10.7007 24 1 1.1139 1.7657 9.9081 25 6 2.1266 -0.8428 3.7328 26 1 1.7422 -1.8593 3.8166 27 6 3.6538 -0.8550 3.8239 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1264 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2950 33 1 1.8146 -1.7986 -4.0212 34 1 2.0331 -0.3422 -5.0206 35 1 3.3352 -0.8778 -3.9312 36 1 1.0703 1.7179 2.0042 37 1 -0.1843 0.6628 2.7215 38 1 0.4957 1.9492 4.6371 39 1 2.2123 1.9828 4.1114 40 1 3.4534 0.0922 5.7786 41 1 4.9031 0.5846 8.7421 42 1 3.9569 -1.2598 4.7896 43 1 4.0605 -1.4761 3.0258 44 1 4.0321 0.1621 3.7214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180242267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:50 Heat of formation + Delta-G solvation = -108.729422 kcal Electronic energy + Delta-G solvation = -25667.949672 eV Core-core repulsion = 21940.500037 eV Total energy + Delta-G solvation = -3727.449636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51751 -39.09539 -37.99869 -37.10315 -36.06537 -35.64511 -33.34287 -32.09788 -30.72660 -30.41004 -28.35072 -26.79779 -25.81394 -24.89057 -23.09130 -21.00979 -19.94358 -19.78981 -19.44994 -18.48916 -17.37163 -17.25790 -16.95954 -16.83249 -16.51467 -16.36238 -15.72483 -15.57781 -15.11693 -14.81424 -14.50164 -14.05612 -13.93895 -13.88229 -13.82263 -13.75010 -13.50156 -13.27694 -13.05560 -13.00414 -12.93197 -12.87193 -12.66474 -12.62324 -12.33632 -12.32190 -12.07310 -12.02291 -11.98684 -11.61186 -11.53984 -11.49395 -10.92107 -10.68013 -9.68758 -9.01475 -7.93822 -5.22797 -0.93749 1.49695 1.50740 1.55879 1.58993 1.85370 1.89400 2.57669 2.70870 3.12683 3.28676 3.38627 3.51370 3.72891 3.74996 3.85642 3.95408 4.11305 4.13128 4.18583 4.22269 4.34064 4.39594 4.44003 4.52194 4.64426 4.68109 4.75910 4.83026 4.86785 4.95892 5.00792 5.04891 5.20296 5.24625 5.28088 5.32502 5.49135 5.55062 6.27845 6.54169 7.08840 7.35221 8.08758 8.32152 9.29833 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036282 B = 0.002662 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.542425 B =10517.234784 C =10797.076121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.119 0.881 4 C -0.596 4.596 5 S 2.432 3.568 6 C -0.639 4.639 7 O -0.965 6.965 8 O -0.982 6.982 9 C 0.534 3.466 10 O -0.574 6.574 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.147 4.147 14 C 0.166 3.834 15 H 0.071 0.929 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.133 3.867 26 H 0.066 0.934 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.380 0.620 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -1.768 -24.838 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.119 4.119 3 H 0.137 0.863 4 C -0.724 4.724 5 S 2.618 3.382 6 C -0.792 4.792 7 O -0.962 6.962 8 O -0.979 6.979 9 C 0.323 3.677 10 O -0.453 6.453 11 N -0.340 5.340 12 C -0.024 4.024 13 C -0.188 4.188 14 C 0.056 3.944 15 H 0.089 0.911 16 N -0.374 5.374 17 C -0.370 4.370 18 H 0.100 0.900 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.191 1.191 25 C 0.028 3.972 26 H 0.084 0.916 27 C -0.203 4.203 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.216 0.784 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.418 -1.471 -24.862 26.289 hybrid contribution 1.110 -0.637 1.437 1.925 sum -7.308 -2.108 -23.424 24.628 Atomic orbital electron populations 1.22471 0.90538 1.04999 1.06128 1.21016 0.99358 1.00901 0.90594 0.86291 1.30279 1.13403 1.14905 1.13796 1.07276 0.75191 0.76830 0.78862 1.30096 1.15127 1.16745 1.17209 1.93539 1.29323 1.87449 1.85900 1.93562 1.76736 1.40896 1.86684 1.20495 0.79424 0.84111 0.83684 1.90646 1.39882 1.28202 1.86618 1.48585 1.50851 1.29985 1.04531 1.22705 0.95572 0.86999 0.97173 1.23390 1.01814 0.98793 0.94770 1.21398 0.92772 0.93626 0.86651 0.91100 1.42841 1.05522 1.84742 1.04285 1.19665 0.92807 1.38459 0.86070 0.90038 1.25549 0.95481 1.03807 1.01957 1.69816 1.01240 1.58649 1.32460 0.85150 0.77158 0.77369 0.80120 1.21704 1.22661 1.19098 1.21627 0.94893 0.97019 0.83642 0.91576 1.21827 0.95826 1.01266 1.01368 0.88642 0.90871 0.89267 0.83547 0.82798 0.82802 0.83912 0.83305 0.88381 0.88248 0.89217 0.92581 0.78397 0.94113 0.92524 0.92355 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.64 71.98 0.62 -2.41 16 2 C -0.10 -1.86 2.07 -11.54 -0.02 -1.88 16 3 H 0.12 2.06 7.85 -2.39 -0.02 2.04 16 4 C -0.60 -8.20 4.61 71.98 0.33 -7.87 16 5 S 2.43 29.94 5.15 -56.49 -0.29 29.65 16 6 C -0.64 -2.43 10.62 113.37 1.20 -1.23 16 7 O -0.96 -17.27 15.46 -127.37 -1.97 -19.24 16 8 O -0.98 -20.38 18.10 -127.37 -2.30 -22.69 16 9 C 0.53 14.69 7.00 87.66 0.61 15.31 16 10 O -0.57 -19.38 14.83 -3.03 -0.04 -19.43 16 11 N -0.61 -17.05 3.08 -788.05 -2.42 -19.48 16 12 C 0.10 2.18 5.14 86.85 0.45 2.63 16 13 C -0.15 -4.41 6.77 31.98 0.22 -4.20 16 14 C 0.17 6.11 3.49 46.18 0.16 6.27 16 15 H 0.07 2.55 8.09 -2.38 -0.02 2.53 16 16 N -0.73 -35.28 4.94 -317.32 -1.57 -36.85 16 17 C -0.24 -12.64 9.96 84.03 0.84 -11.80 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 21 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.13 4.59 3.48 45.34 0.16 4.74 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 C -0.14 -5.54 7.93 71.98 0.57 -4.97 16 28 H 0.10 1.55 5.40 -2.38 -0.01 1.54 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.28 4.99 -2.39 -0.01 1.27 16 31 H 0.15 1.85 7.95 -2.39 -0.02 1.83 16 32 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.10 1.73 7.36 -2.39 -0.02 1.72 16 37 H 0.10 1.73 7.07 -2.39 -0.02 1.71 16 38 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.38 19.87 5.06 -92.71 -0.47 19.40 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 42 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 43 H 0.06 2.21 6.76 -2.39 -0.02 2.19 16 44 H 0.05 1.84 8.03 -2.39 -0.02 1.83 16 Total: -1.00 -78.93 357.29 -0.15 -79.08 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.54 Total: 29.34 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.60 Total: -9.18 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.71 Total: -114.70 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -4.32 Total: -61.35 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 29.94 SS G_CDS: -0.29 Total: 29.65 kcal Total: -78.93 -0.15 -79.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180242267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.650 kcal (2) G-P(sol) polarization free energy of solvation -78.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds