Wall clock time and date at job start Tue Mar 31 2020 04:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47168 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46761 * 179.97438 * 4 3 2 6 6 C 1.37090 * 120.00188 * 270.00181 * 5 4 3 7 7 H 1.07997 * 120.00303 * 145.37288 * 6 5 4 8 8 C 1.38957 * 119.99986 * 325.36784 * 6 5 4 9 9 N 1.31414 * 119.99669 * 336.82882 * 8 6 5 10 10 Si 1.86801 * 120.00100 * 156.82441 * 8 6 5 11 11 H 1.48506 * 109.46973 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47088 * 120.00219 * 10 8 6 13 13 H 1.48497 * 109.46898 * 240.00214 * 10 8 6 14 14 C 1.34775 * 119.99713 * 90.00166 * 5 4 3 15 15 O 1.21297 * 120.00075 * 4.75977 * 14 5 4 16 16 C 1.50699 * 119.99976 * 184.75830 * 14 5 4 17 17 N 1.46900 * 109.47114 * 173.65220 * 16 14 5 18 18 C 1.46473 * 111.00014 * 295.84992 * 17 16 14 19 19 C 1.53186 * 109.89690 * 163.00213 * 18 17 16 20 20 S 1.81808 * 108.67645 * 62.64115 * 19 18 17 21 21 O 1.42105 * 108.69951 * 193.42515 * 20 19 18 22 22 O 1.42101 * 108.82938 * 61.98577 * 20 19 18 23 23 C 1.81814 * 101.02265 * 307.67847 * 20 19 18 24 24 C 1.46479 * 110.99657 * 169.99965 * 17 16 14 25 25 H 1.08992 * 109.47194 * 59.99977 * 1 2 3 26 26 H 1.08999 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46995 * 299.99771 * 1 2 3 28 28 H 1.09000 * 109.47415 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47397 * 119.99925 * 2 1 3 30 30 H 1.09000 * 109.47011 * 59.99681 * 3 2 1 31 31 H 1.09001 * 109.46900 * 300.00229 * 3 2 1 32 32 H 1.08994 * 109.46848 * 60.00259 * 4 3 2 33 33 H 1.08993 * 109.46842 * 299.99616 * 4 3 2 34 34 H 0.96998 * 119.99629 * 185.57276 * 9 8 6 35 35 H 1.09000 * 109.46971 * 53.64914 * 16 14 5 36 36 H 1.09004 * 109.46835 * 293.65242 * 16 14 5 37 37 H 1.08996 * 109.40009 * 283.13669 * 18 17 16 38 38 H 1.08997 * 109.39594 * 42.87424 * 18 17 16 39 39 H 1.08999 * 109.60331 * 302.88174 * 19 18 17 40 40 H 1.09003 * 109.59768 * 182.40042 * 19 18 17 41 41 H 1.09001 * 109.60217 * 292.56210 * 23 20 19 42 42 H 1.09001 * 109.60307 * 172.07328 * 23 20 19 43 43 H 1.08991 * 109.39944 * 317.12773 * 24 17 16 44 44 H 1.08994 * 109.39977 * 76.86843 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2872 3.4694 -1.1875 7 1 4.0983 4.5294 -1.2710 8 6 4.7624 2.7599 -2.2837 9 7 5.4128 1.6321 -2.1046 10 14 4.4767 3.4092 -4.0118 11 1 3.7250 4.6880 -3.9421 12 1 5.7844 3.6398 -4.6764 13 1 3.6940 2.4161 -4.7905 14 6 4.2824 3.4598 1.1670 15 8 4.1631 2.8625 2.2159 16 6 4.6813 4.9130 1.1686 17 7 4.7173 5.4094 2.5507 18 6 3.3841 5.3731 3.1564 19 6 3.5006 5.4810 4.6800 20 16 4.2453 7.0869 5.0947 21 8 4.6402 7.0670 6.4596 22 8 3.3890 8.1226 4.6327 23 6 5.7371 7.0569 4.0557 24 6 5.3250 6.7406 2.6147 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 5.8144 1.1784 -2.8620 35 1 3.9560 5.4895 0.5942 36 1 5.6683 5.0193 0.7185 37 1 2.7920 6.2066 2.7785 38 1 2.8937 4.4351 2.8963 39 1 4.1326 4.6767 5.0563 40 1 2.5095 5.4108 5.1283 41 1 6.4196 6.2881 4.4180 42 1 6.2268 8.0301 4.0908 43 1 6.2049 6.7681 1.9721 44 1 4.6051 7.4840 2.2726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180592721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:13 Heat of formation + Delta-G solvation = -96.672620 kcal Electronic energy + Delta-G solvation = -25938.959325 eV Core-core repulsion = 22212.032512 eV Total energy + Delta-G solvation = -3726.926814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.23049 -37.62770 -36.85192 -36.02886 -35.27474 -33.99501 -31.82987 -31.59721 -31.06600 -28.64054 -25.88224 -24.95821 -24.03932 -22.65409 -21.23461 -20.43448 -19.18036 -18.77908 -17.14738 -16.83775 -16.28634 -16.08777 -15.72080 -15.49192 -14.97315 -14.79129 -14.66998 -14.20499 -14.02053 -13.97355 -13.37758 -13.07836 -12.70023 -12.48959 -12.29438 -12.24131 -12.14695 -12.12263 -12.01914 -11.80337 -11.71936 -11.45303 -11.41273 -11.27146 -10.90178 -10.67289 -10.60842 -10.54899 -10.39155 -10.29827 -10.03336 -9.79273 -9.20172 -8.60711 -8.10008 -7.57865 -6.48100 -4.14478 0.04499 2.64371 3.01226 3.14397 3.16601 3.59569 3.64757 3.78721 4.01401 4.09690 4.50527 4.68325 4.74021 4.85430 4.87166 5.06882 5.16649 5.26751 5.42934 5.46899 5.60475 5.62585 5.69088 5.81523 5.89707 6.01796 6.02421 6.11384 6.19656 6.22325 6.32062 6.36280 6.53267 6.66666 6.76173 6.95680 7.08531 7.16156 7.27386 7.44194 7.84679 8.26808 8.97357 9.43306 9.85561 10.52972 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.003868 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.736729 B = 7237.186034 C = 8495.366217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.111 3.889 5 N -0.437 5.437 6 C -0.349 4.349 7 H 0.090 0.910 8 C 0.048 3.952 9 N -0.855 5.855 10 Si 0.911 3.089 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.468 3.532 15 O -0.589 6.589 16 C 0.061 3.939 17 N -0.539 5.539 18 C 0.065 3.935 19 C -0.582 4.582 20 S 2.407 3.593 21 O -0.951 6.951 22 O -0.946 6.946 23 C -0.592 4.592 24 C 0.065 3.935 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.099 0.901 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.698 5.408 4.778 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.013 4.013 5 N -0.156 5.156 6 C -0.476 4.476 7 H 0.107 0.893 8 C -0.159 4.159 9 N -0.491 5.491 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.204 1.204 14 C 0.256 3.744 15 O -0.474 6.474 16 C -0.068 4.068 17 N -0.265 5.265 18 C -0.064 4.064 19 C -0.713 4.713 20 S 2.590 3.410 21 O -0.948 6.948 22 O -0.943 6.943 23 C -0.723 4.723 24 C -0.064 4.064 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.134 0.866 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.732 5.280 6.009 8.453 hybrid contribution -0.135 0.180 -1.976 1.989 sum -2.867 5.460 4.033 7.369 Atomic orbital electron populations 1.21756 0.96630 1.00724 1.01444 1.21430 0.94966 0.97733 1.01649 1.21887 0.97911 0.95478 1.01149 1.21459 0.91089 0.84893 1.03809 1.43455 1.55517 1.12185 1.04396 1.19421 1.45950 0.94867 0.87388 0.89264 1.25318 0.94461 0.95919 1.00169 1.69859 1.29602 1.17552 1.32047 0.86128 0.78431 0.79228 0.82441 1.19170 1.20686 1.20421 1.20101 0.81141 0.88737 0.84374 1.90521 1.57106 1.68095 1.31723 1.21748 1.03396 0.95374 0.86306 1.60788 1.22416 1.22738 1.20526 1.21826 0.90188 1.04952 0.89432 1.30089 1.13511 1.22057 1.05603 1.08245 0.78420 0.78251 0.76046 1.93571 1.82888 1.87169 1.31169 1.93571 1.64567 1.53409 1.82767 1.30161 1.20706 1.10884 1.10509 1.21747 1.01239 0.89947 0.93483 0.93036 0.93397 0.93123 0.92217 0.92401 0.93255 0.92282 0.87535 0.92664 0.91848 0.92470 0.87828 0.93447 0.86643 0.83718 0.84940 0.83958 0.84851 0.88296 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.40 5.54 -26.73 -0.15 -2.55 16 4 C 0.11 2.49 5.05 -4.04 -0.02 2.47 16 5 N -0.44 -10.15 2.54 -114.82 -0.29 -10.44 16 6 C -0.35 -8.12 8.75 -14.93 -0.13 -8.25 16 7 H 0.09 1.97 6.84 -52.49 -0.36 1.61 16 8 C 0.05 1.13 4.94 -17.46 -0.09 1.05 16 9 N -0.85 -21.31 11.36 55.50 0.63 -20.68 16 10 Si 0.91 18.24 29.62 -169.99 -5.03 13.21 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 14 C 0.47 10.35 7.01 -10.99 -0.08 10.27 16 15 O -0.59 -14.08 14.24 5.54 0.08 -14.00 16 16 C 0.06 1.09 4.16 -4.98 -0.02 1.07 16 17 N -0.54 -8.26 4.15 -236.56 -0.98 -9.24 16 18 C 0.06 0.95 4.96 -3.96 -0.02 0.93 16 19 C -0.58 -7.02 6.58 37.25 0.25 -6.77 16 20 S 2.41 28.69 5.34 -107.50 -0.57 28.11 16 21 O -0.95 -14.06 18.11 -57.81 -1.05 -15.11 16 22 O -0.95 -13.87 18.10 -57.81 -1.05 -14.92 16 23 C -0.59 -5.95 6.58 37.25 0.24 -5.71 16 24 C 0.06 0.77 5.41 -3.96 -0.02 0.75 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.11 2.57 5.37 -51.93 -0.28 2.29 16 33 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 34 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 35 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 36 H 0.10 1.80 7.84 -51.93 -0.41 1.39 16 37 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 38 H 0.12 1.99 5.83 -51.93 -0.30 1.69 16 39 H 0.14 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.06 7.77 -51.93 -0.40 0.66 16 44 H 0.05 0.61 7.93 -51.93 -0.41 0.20 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -31.40 361.81 -9.77 -41.17 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.13 Total: 6.91 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.18 Total: -10.46 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.64 Total: -40.37 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -2.01 Total: -44.03 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 28.69 SS G_CDS: -0.57 Total: 28.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.40 -9.77 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180592721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.500 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds