Wall clock time and date at job start Tue Mar 31 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.38824 * 2 1 4 4 C 1.54799 * 110.52425 * 237.82581 * 2 1 3 5 5 N 1.48140 * 104.41587 * 265.22482 * 4 2 1 6 6 C 1.34780 * 127.83741 * 140.36493 * 5 4 2 7 7 O 1.21280 * 120.00423 * 179.67761 * 6 5 4 8 8 C 1.50701 * 119.99795 * 359.68437 * 6 5 4 9 9 S 1.81404 * 109.47098 * 179.97438 * 8 6 5 10 10 C 1.81393 * 101.92151 * 179.97438 * 9 8 6 11 11 O 1.42099 * 108.57494 * 294.48444 * 9 8 6 12 12 O 1.42093 * 108.57831 * 65.50889 * 9 8 6 13 13 C 1.48145 * 104.32678 * 320.10758 * 5 4 2 14 14 C 1.54284 * 110.34438 * 122.23394 * 2 1 3 15 15 C 1.53005 * 110.34059 * 359.97438 * 14 2 1 16 16 C 1.53003 * 110.34311 * 237.74197 * 14 2 1 17 17 N 1.46494 * 109.47210 * 183.00530 * 16 14 2 18 18 C 1.36934 * 120.00025 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00002 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00095 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00072 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47078 * 59.99823 * 22 20 18 24 24 H 1.48494 * 109.46847 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46835 * 299.99898 * 22 20 18 26 26 H 1.09003 * 109.47035 * 297.76660 * 1 2 3 27 27 H 1.09003 * 109.47140 * 57.77001 * 1 2 3 28 28 H 1.09002 * 109.47575 * 177.77332 * 1 2 3 29 29 H 1.08996 * 110.53999 * 146.48915 * 4 2 1 30 30 H 1.08997 * 110.46104 * 23.92622 * 4 2 1 31 31 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 32 32 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 33 33 H 1.09008 * 109.47605 * 59.99893 * 10 9 8 34 34 H 1.08997 * 109.47133 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47147 * 299.99853 * 10 9 8 36 36 H 1.09000 * 110.41001 * 158.62937 * 13 5 4 37 37 H 1.09002 * 110.40779 * 280.94522 * 13 5 4 38 38 H 1.09007 * 109.47003 * 176.99345 * 15 14 2 39 39 H 1.08994 * 109.47400 * 296.99508 * 15 14 2 40 40 H 1.09004 * 109.46830 * 56.99718 * 15 14 2 41 41 H 1.08993 * 109.46657 * 303.00681 * 16 14 2 42 42 H 1.08998 * 109.47140 * 63.00688 * 16 14 2 43 43 H 0.96996 * 120.00173 * 359.97438 * 17 16 14 44 44 H 0.97003 * 119.99800 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0727 -0.7720 -1.2271 5 7 2.3138 -2.1438 -0.7227 6 6 2.0772 -3.3106 -1.3545 7 8 2.3359 -4.3608 -0.8058 8 6 1.4912 -3.3102 -2.7430 9 16 1.2940 -5.0198 -3.3165 10 6 0.5888 -4.7811 -4.9706 11 8 2.5826 -5.6030 -3.4530 12 8 0.3246 -5.6622 -2.5000 13 6 2.8801 -1.9422 0.6314 14 6 2.0663 -0.7716 1.2236 15 6 0.9061 -1.3031 2.0677 16 6 2.9692 0.1306 2.0674 17 7 3.5244 -0.6400 3.1827 18 6 4.3676 -0.0381 4.0781 19 1 4.6237 1.0047 3.9618 20 6 4.8942 -0.7684 5.1347 21 7 4.5826 -2.0393 5.2762 22 14 6.0451 0.0526 6.3558 23 1 5.3426 1.1825 7.0155 24 1 6.4647 -0.9355 7.3818 25 1 7.2423 0.5636 5.6411 26 1 -0.3633 0.4788 0.9094 27 1 -0.3633 0.5481 -0.8693 28 1 -0.3634 -1.0269 -0.0399 29 1 3.0038 -0.3268 -1.5778 30 1 1.3321 -0.7857 -2.0267 31 1 0.5191 -2.8175 -2.7269 32 1 2.1585 -2.7753 -3.4188 33 1 1.2821 -4.2024 -5.5812 34 1 0.4173 -5.7517 -5.4360 35 1 -0.3571 -4.2457 -4.8886 36 1 2.7494 -2.8400 1.2356 37 1 3.9359 -1.6791 0.5665 38 1 1.2996 -1.8901 2.8976 39 1 0.3269 -0.4660 2.4573 40 1 0.2653 -1.9319 1.4495 41 1 3.7817 0.5118 1.4490 42 1 2.3866 0.9654 2.4570 43 1 3.2948 -1.5766 3.2870 44 1 4.9502 -2.5495 6.0147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180793797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:32 Heat of formation + Delta-G solvation = -81.913989 kcal Electronic energy + Delta-G solvation = -25799.318466 eV Core-core repulsion = 22073.031634 eV Total energy + Delta-G solvation = -3726.286831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.46276 -38.49207 -37.16924 -36.16348 -34.89519 -33.27813 -31.59056 -31.07563 -29.86679 -29.47418 -27.30205 -25.62354 -25.37971 -23.28400 -21.30413 -19.91424 -19.00653 -18.58285 -17.73505 -17.07305 -16.70476 -16.53360 -16.12711 -15.91262 -15.03967 -14.84705 -14.43000 -14.25035 -14.03663 -13.69860 -13.61639 -13.48984 -13.15340 -13.07261 -12.94275 -12.54595 -12.29577 -12.21820 -12.15696 -12.07552 -11.59913 -11.43217 -11.35174 -11.29717 -11.08681 -11.01186 -10.79584 -10.49022 -10.39518 -10.24300 -10.19215 -9.92028 -9.62534 -8.87853 -8.74989 -6.92187 -5.74773 -3.04324 -0.41307 2.35891 2.43696 2.69775 3.44941 3.49187 3.50059 3.50961 3.68799 4.07853 4.28081 4.37039 4.46966 4.55246 4.68914 4.70517 4.77173 4.83447 5.19096 5.19920 5.32787 5.35432 5.42067 5.52319 5.60131 5.71761 5.82709 5.92377 5.94281 6.05442 6.11783 6.17310 6.21697 6.40551 6.52162 6.63757 6.73472 6.83041 7.41221 7.69825 7.87069 8.43387 9.54660 10.11470 10.45745 11.47653 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.003121 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.588399 B = 8970.478955 C = 9740.884279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.610 5.610 6 C 0.558 3.442 7 O -0.527 6.527 8 C -0.655 4.655 9 S 2.456 3.544 10 C -0.664 4.664 11 O -0.920 6.920 12 O -0.920 6.920 13 C 0.117 3.883 14 C -0.075 4.075 15 C -0.133 4.133 16 C 0.169 3.831 17 N -0.731 5.731 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 2.606 -23.605 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.022 4.022 5 N -0.343 5.343 6 C 0.344 3.656 7 O -0.405 6.405 8 C -0.782 4.782 9 S 2.631 3.369 10 C -0.812 4.812 11 O -0.917 6.917 12 O -0.917 6.917 13 C -0.004 4.004 14 C -0.077 4.077 15 C -0.190 4.190 16 C 0.041 3.959 17 N -0.376 5.376 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.260 1.293 -22.829 25.487 hybrid contribution 0.384 1.184 0.183 1.258 sum -10.876 2.477 -22.646 25.244 Atomic orbital electron populations 1.21925 0.94460 1.01900 1.01775 1.22219 0.96279 0.99611 0.93670 0.89168 1.22676 1.00801 0.81642 0.97102 1.48835 1.62154 1.04949 1.18339 1.18586 0.78694 0.83306 0.85024 1.90902 1.52823 1.29764 1.66987 1.30874 1.11656 1.30190 1.05528 1.07195 0.76054 0.76411 0.77195 1.30410 1.13835 1.12448 1.24544 1.93606 1.39610 1.72532 1.85958 1.93604 1.62434 1.70198 1.65446 1.22610 0.97505 0.99395 0.80892 1.21726 0.96324 0.95076 0.94547 1.21882 0.96789 1.00827 0.99533 1.20702 0.93266 0.92801 0.89136 1.42381 1.55839 1.11103 1.28244 1.19140 1.19771 0.94680 1.03857 0.91301 1.24743 1.00955 0.95891 0.99179 1.69645 1.48290 1.07004 1.32932 0.86279 0.80805 0.78094 0.81032 1.21333 1.21700 1.21311 0.91630 0.93149 0.92375 0.90453 0.90411 0.82524 0.82503 0.85287 0.84915 0.85289 0.89194 0.89862 0.91417 0.92367 0.93248 0.96225 0.95925 0.78021 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.94 37.16 0.30 -1.04 16 2 C -0.10 -1.06 3.31 -89.00 -0.29 -1.35 16 3 H 0.09 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.10 0.95 6.49 -2.19 -0.01 0.94 16 5 N -0.61 -8.19 3.31 -169.06 -0.56 -8.75 16 6 C 0.56 7.95 7.93 -10.98 -0.09 7.87 16 7 O -0.53 -10.18 15.89 2.54 0.04 -10.14 16 8 C -0.66 -4.97 5.26 36.01 0.19 -4.78 16 9 S 2.46 22.88 4.60 -107.50 -0.49 22.39 16 10 C -0.66 -2.29 10.62 101.05 1.07 -1.21 16 11 O -0.92 -12.76 17.95 -59.52 -1.07 -13.83 16 12 O -0.92 -12.71 17.94 -59.54 -1.07 -13.78 16 13 C 0.12 1.94 5.54 -2.41 -0.01 1.93 16 14 C -0.08 -1.14 0.73 -153.11 -0.11 -1.25 16 15 C -0.13 -2.08 7.08 37.16 0.26 -1.81 16 16 C 0.17 3.17 4.85 -4.04 -0.02 3.15 16 17 N -0.73 -17.87 5.12 -59.91 -0.31 -18.18 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H 0.06 0.65 6.88 -51.93 -0.36 0.29 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.48 7.04 -51.93 -0.37 0.11 16 31 H 0.16 0.59 7.96 -51.92 -0.41 0.18 16 32 H 0.16 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 34 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 36 H 0.09 1.74 7.60 -51.93 -0.39 1.34 16 37 H 0.08 1.46 7.87 -51.93 -0.41 1.06 16 38 H 0.07 1.26 7.01 -51.93 -0.36 0.90 16 39 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 40 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.39 10.03 6.28 -40.82 -0.26 9.78 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -39.95 363.95 -8.18 -48.13 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.94 Total: 3.67 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 1.03 Total: -4.84 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.14 Total: -54.48 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.10 Total: -37.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 22.88 SS G_CDS: -0.49 Total: 22.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.95 -8.18 -48.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180793797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.782 kcal (2) G-P(sol) polarization free energy of solvation -39.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds