Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52321 * 2 1 4 4 C 1.52765 * 109.56461 * 240.05052 * 2 1 3 5 5 N 1.46927 * 109.00690 * 185.54907 * 4 2 1 6 6 C 1.34770 * 120.63214 * 233.58305 * 5 4 2 7 7 O 1.21280 * 119.99870 * 359.72166 * 6 5 4 8 8 C 1.50697 * 120.00087 * 179.72226 * 6 5 4 9 9 S 1.81399 * 109.47258 * 179.97438 * 8 6 5 10 10 C 1.81404 * 101.92308 * 180.02562 * 9 8 6 11 11 O 1.42102 * 108.57907 * 65.51200 * 9 8 6 12 12 O 1.42104 * 108.57735 * 294.48804 * 9 8 6 13 13 C 1.46929 * 118.73676 * 53.31024 * 5 4 2 14 14 C 1.53196 * 108.77662 * 306.63886 * 13 5 4 15 15 C 1.53041 * 109.49987 * 120.08061 * 2 1 3 16 16 H 1.08998 * 109.44556 * 61.30161 * 15 2 1 17 17 C 1.52995 * 109.45787 * 301.33961 * 15 2 1 18 18 N 1.46502 * 109.47133 * 174.93051 * 17 15 2 19 19 C 1.36937 * 120.00681 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99483 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00418 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46935 * 59.99804 * 23 21 19 25 25 H 1.48494 * 109.47213 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46894 * 299.99929 * 23 21 19 27 27 H 1.08997 * 109.47364 * 299.91759 * 1 2 3 28 28 H 1.09009 * 109.47466 * 59.91931 * 1 2 3 29 29 H 1.09005 * 109.47161 * 179.91588 * 1 2 3 30 30 H 1.09000 * 109.50983 * 65.67040 * 4 2 1 31 31 H 1.08997 * 109.43148 * 305.38368 * 4 2 1 32 32 H 1.09003 * 109.47657 * 59.99832 * 8 6 5 33 33 H 1.08997 * 109.47254 * 300.00027 * 8 6 5 34 34 H 1.09002 * 109.47124 * 299.99874 * 10 9 8 35 35 H 1.09001 * 109.46975 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47147 * 59.99959 * 10 9 8 37 37 H 1.08996 * 109.59114 * 66.42821 * 13 5 4 38 38 H 1.09000 * 109.58948 * 186.85367 * 13 5 4 39 39 H 1.08993 * 109.50008 * 174.58706 * 14 13 5 40 40 H 1.09001 * 109.49746 * 294.65732 * 14 13 5 41 41 H 1.09001 * 109.47740 * 294.92968 * 17 15 2 42 42 H 1.09002 * 109.47521 * 54.93552 * 17 15 2 43 43 H 0.97003 * 120.00034 * 359.97438 * 18 17 15 44 44 H 0.97003 * 120.00300 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0415 -0.7186 -1.2472 5 7 3.5046 -0.8290 -1.1697 6 6 4.2811 -0.3854 -2.1779 7 8 3.7731 0.1060 -3.1635 8 6 5.7806 -0.4999 -2.0807 9 16 6.5375 0.1785 -3.5831 10 6 8.3052 -0.0599 -3.2526 11 8 6.2701 1.5731 -3.6348 12 8 6.1691 -0.6399 -4.6849 13 6 4.1053 -1.4266 0.0307 14 6 3.5709 -0.6949 1.2660 15 6 2.0408 -0.7231 1.2483 16 1 1.6967 -1.7572 1.2350 17 6 1.5037 -0.0232 2.4983 18 7 1.8917 -0.7840 3.6887 19 6 1.5200 -0.3468 4.9320 20 1 0.9411 0.5591 5.0351 21 6 1.8881 -1.0674 6.0599 22 7 2.5940 -2.1711 5.9342 23 14 1.3804 -0.4713 7.7559 24 1 -0.1012 -0.4111 7.8364 25 1 1.8938 -1.4108 8.7850 26 1 1.9445 0.8815 7.9945 27 1 -0.3634 0.5125 0.8907 28 1 -0.3634 0.5151 -0.8893 29 1 -0.3634 -1.0277 -0.0015 30 1 1.7646 -0.1495 -2.1346 31 1 1.6021 -1.7148 -1.2976 32 1 6.0589 -1.5486 -1.9758 33 1 6.1321 0.0578 -1.2127 34 1 8.5829 0.4850 -2.3503 35 1 8.8861 0.3133 -4.0961 36 1 8.5088 -1.1216 -3.1131 37 1 3.8376 -2.4817 0.0867 38 1 5.1896 -1.3245 -0.0138 39 1 3.9334 -1.1896 2.1670 40 1 3.9163 0.3388 1.2543 41 1 1.9193 0.9826 2.5586 42 1 0.4166 0.0355 2.4431 43 1 2.4113 -1.5978 3.5961 44 1 2.8510 -2.6749 6.7224 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184009171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -95.026566 kcal Electronic energy + Delta-G solvation = -25406.634109 eV Core-core repulsion = 21679.778673 eV Total energy + Delta-G solvation = -3726.855435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.53032 -38.25951 -37.22085 -36.22463 -35.15652 -33.78166 -32.13428 -31.04524 -30.36599 -29.77217 -26.98926 -26.41307 -23.82436 -22.64932 -21.48598 -20.33197 -19.44252 -18.97034 -17.82869 -17.10589 -16.93707 -16.62856 -16.19356 -15.59194 -15.51844 -14.88542 -14.56687 -14.09658 -13.99251 -13.79451 -13.67052 -13.60074 -13.58306 -13.06312 -12.89449 -12.58795 -12.53885 -12.27882 -12.21063 -12.01030 -11.93792 -11.72736 -11.40893 -11.09991 -11.03549 -10.94628 -10.84743 -10.51376 -10.46326 -10.26212 -10.16536 -10.00361 -9.68110 -8.90979 -8.78739 -6.95560 -5.81645 -3.09579 -0.44934 2.20523 2.38970 2.62711 3.40665 3.41965 3.45369 3.46054 3.65721 4.00562 4.26915 4.36553 4.54325 4.64065 4.67122 4.76483 4.85641 4.90116 4.99952 5.20284 5.21339 5.33187 5.42652 5.52677 5.64450 5.71473 5.78232 5.83196 5.89313 6.00537 6.13951 6.21602 6.25415 6.33591 6.43399 6.53579 6.77954 6.87142 7.08586 7.65700 7.73232 8.37955 9.49124 10.06884 10.41482 11.41298 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.002781 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.438623 B =10067.114952 C =10883.333716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.543 3.457 7 O -0.536 6.536 8 C -0.661 4.661 9 S 2.455 3.545 10 C -0.663 4.663 11 O -0.922 6.922 12 O -0.923 6.923 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.090 4.090 16 H 0.073 0.927 17 C 0.156 3.844 18 N -0.732 5.732 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.017 0.983 42 H 0.025 0.975 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 0.771 -17.264 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.093 0.907 4 C -0.007 4.007 5 N -0.327 5.327 6 C 0.329 3.671 7 O -0.415 6.415 8 C -0.788 4.788 9 S 2.632 3.368 10 C -0.812 4.812 11 O -0.919 6.919 12 O -0.921 6.921 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.109 4.109 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.043 0.957 43 H 0.216 0.784 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.960 1.467 -18.349 20.472 hybrid contribution 0.489 -0.477 2.046 2.157 sum 9.449 0.990 -16.302 18.869 Atomic orbital electron populations 1.21828 0.94112 1.02277 1.02225 1.21404 0.96384 1.00066 0.94004 0.90731 1.21743 0.77871 1.01408 0.99650 1.48010 1.07355 1.59508 1.17864 1.19073 0.86451 0.78264 0.83354 1.90843 1.74763 1.45149 1.30725 1.30904 1.05237 1.16074 1.26549 1.07163 0.77526 0.75861 0.76268 1.30394 1.26058 1.12027 1.12699 1.93601 1.83242 1.29758 1.85265 1.93593 1.81297 1.70571 1.46595 1.22009 0.98117 0.97905 0.84189 1.21964 0.96339 1.01206 0.97096 1.21350 0.94557 1.00310 0.94649 0.90837 1.20757 0.96775 0.94051 0.85544 1.42366 1.65495 1.28911 1.00857 1.19185 1.27721 1.06231 0.83840 0.91324 1.24713 1.00908 0.97518 0.97816 1.69636 1.42815 1.17264 1.28704 0.86273 0.78104 0.77647 0.84199 1.21287 1.21698 1.21295 0.91196 0.92853 0.92442 0.88782 0.91013 0.82224 0.82076 0.85116 0.84909 0.85190 0.90533 0.89789 0.88996 0.91597 0.96522 0.95703 0.78353 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.25 2.40 -90.72 -0.22 -1.47 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.39 5.69 -3.93 -0.02 1.37 16 5 N -0.60 -6.99 2.98 -173.03 -0.52 -7.50 16 6 C 0.54 6.78 7.72 -10.99 -0.08 6.69 16 7 O -0.54 -8.79 15.04 2.56 0.04 -8.75 16 8 C -0.66 -4.70 4.64 36.00 0.17 -4.53 16 9 S 2.46 21.18 4.60 -107.50 -0.49 20.69 16 10 C -0.66 -2.28 10.62 101.05 1.07 -1.21 16 11 O -0.92 -12.05 17.95 -59.53 -1.07 -13.12 16 12 O -0.92 -11.76 17.95 -59.52 -1.07 -12.83 16 13 C 0.10 1.01 6.34 -3.71 -0.02 0.99 16 14 C -0.13 -1.69 5.25 -26.61 -0.14 -1.83 16 15 C -0.09 -1.31 1.73 -90.58 -0.16 -1.47 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 18 N -0.73 -17.54 5.32 -59.91 -0.32 -17.86 16 19 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.94 -27.31 13.06 55.49 0.72 -26.59 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 28 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.16 0.54 7.94 -51.92 -0.41 0.13 16 33 H 0.16 0.65 7.69 -51.93 -0.40 0.25 16 34 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 39 H 0.09 1.39 7.15 -51.93 -0.37 1.02 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.48 6.14 -51.93 -0.32 0.16 16 43 H 0.38 9.48 6.85 -40.82 -0.28 9.20 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -38.61 362.58 -8.58 -47.19 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.98 Total: 3.42 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 0.65 Total: -7.04 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.11 Total: -51.95 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.10 Total: -34.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -0.49 Total: 20.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.61 -8.58 -47.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184009171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.837 kcal (2) G-P(sol) polarization free energy of solvation -38.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds