Wall clock time and date at job start Tue Mar 31 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.49579 * 2 1 4 4 C 1.52766 * 109.38642 * 120.07035 * 2 1 3 5 5 N 1.46925 * 109.00295 * 65.51934 * 4 2 1 6 6 C 1.34777 * 120.63004 * 233.57873 * 5 4 2 7 7 O 1.21279 * 119.99953 * 359.72713 * 6 5 4 8 8 C 1.50702 * 120.00107 * 179.72379 * 6 5 4 9 9 S 1.81398 * 109.47325 * 180.02562 * 8 6 5 10 10 C 1.81391 * 101.92304 * 179.97438 * 9 8 6 11 11 O 1.42105 * 108.57879 * 65.51020 * 9 8 6 12 12 O 1.42097 * 108.57629 * 294.48781 * 9 8 6 13 13 C 1.46923 * 118.74041 * 53.31202 * 5 4 2 14 14 C 1.53198 * 108.77496 * 306.63999 * 13 5 4 15 15 C 1.53035 * 109.50225 * 239.93175 * 2 1 3 16 16 H 1.09001 * 109.46327 * 181.35855 * 15 2 1 17 17 C 1.53004 * 109.44954 * 61.39590 * 15 2 1 18 18 N 1.46497 * 109.47322 * 174.94429 * 17 15 2 19 19 C 1.36933 * 120.00217 * 180.02562 * 18 17 15 20 20 H 1.08009 * 120.00196 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00210 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00198 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47034 * 90.00011 * 23 21 19 25 25 H 1.48506 * 109.46892 * 209.99972 * 23 21 19 26 26 H 1.48500 * 109.46668 * 329.99947 * 23 21 19 27 27 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47615 * 300.06819 * 1 2 3 29 29 H 1.09000 * 109.47206 * 60.07167 * 1 2 3 30 30 H 1.08993 * 109.51163 * 305.63992 * 4 2 1 31 31 H 1.08998 * 109.43387 * 185.35492 * 4 2 1 32 32 H 1.08998 * 109.47154 * 60.00299 * 8 6 5 33 33 H 1.09006 * 109.47117 * 300.00589 * 8 6 5 34 34 H 1.09003 * 109.47583 * 300.00163 * 10 9 8 35 35 H 1.09003 * 109.47643 * 59.99714 * 10 9 8 36 36 H 1.09003 * 109.47254 * 179.97438 * 10 9 8 37 37 H 1.09007 * 109.59046 * 66.42326 * 13 5 4 38 38 H 1.08997 * 109.59199 * 186.85610 * 13 5 4 39 39 H 1.08995 * 109.49738 * 174.58559 * 14 13 5 40 40 H 1.09001 * 109.49399 * 294.65276 * 14 13 5 41 41 H 1.09010 * 109.46620 * 294.93751 * 17 15 2 42 42 H 1.08998 * 109.47389 * 54.93490 * 17 15 2 43 43 H 0.97001 * 119.99641 * 359.97438 * 18 17 15 44 44 H 0.97003 * 120.00011 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0371 -0.7221 1.2471 5 7 1.6529 -2.1381 1.1695 6 6 0.9759 -2.7221 2.1780 7 8 0.6824 -2.0793 3.1637 8 6 0.5835 -4.1739 2.0808 9 16 -0.3095 -4.6608 3.5829 10 6 -0.6759 -6.4062 3.2518 11 8 -1.5350 -3.9432 3.6337 12 8 0.5843 -4.5864 4.6850 13 6 2.0155 -2.9037 -0.0309 14 6 1.5038 -2.1557 -1.2660 15 6 2.0409 -0.7228 -1.2484 16 1 3.1306 -0.7435 -1.2357 17 6 1.5599 0.0173 -2.4982 18 7 2.1469 -0.6023 -3.6889 19 6 1.8583 -0.1058 -4.9320 20 1 1.1974 0.7423 -5.0347 21 6 2.4149 -0.6925 -6.0601 22 7 2.1370 -0.2156 -7.2551 23 14 3.5584 -2.1590 -5.8825 24 1 2.7650 -3.4135 -5.9261 25 1 4.5426 -2.1568 -6.9946 26 1 4.2767 -2.0723 -4.5856 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5149 0.8894 29 1 -0.3633 0.5127 -0.8906 30 1 1.5932 -0.2711 2.1346 31 1 3.1228 -0.6402 1.2972 32 1 1.4791 -4.7861 1.9757 33 1 -0.0598 -4.3191 1.2129 34 1 -1.2820 -6.4855 2.3493 35 1 0.2566 -6.9532 3.1123 36 1 -1.2221 -6.8291 4.0950 37 1 3.0995 -3.0034 -0.0872 38 1 1.5574 -3.8917 0.0136 39 1 1.8489 -2.6625 -2.1672 40 1 0.4140 -2.1364 -1.2541 41 1 0.4729 -0.0390 -2.5579 42 1 1.8672 1.0616 -2.4430 43 1 2.7407 -1.3638 -3.5966 44 1 2.5257 -0.6259 -8.0434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184009172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:40 Heat of formation + Delta-G solvation = -87.595054 kcal Electronic energy + Delta-G solvation = -25733.346525 eV Core-core repulsion = 22006.813344 eV Total energy + Delta-G solvation = -3726.533181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73276 -38.44330 -37.27237 -36.27593 -35.28208 -33.72337 -32.11205 -30.95112 -30.78406 -29.80550 -27.40698 -26.62725 -23.72722 -23.16100 -21.52735 -20.52660 -19.12543 -18.63948 -18.05827 -17.39098 -17.00657 -16.70171 -16.29920 -15.70980 -15.51681 -15.06189 -14.63495 -14.34675 -14.14645 -13.93976 -13.73137 -13.66910 -13.64296 -13.18661 -12.93929 -12.81952 -12.55786 -12.41887 -12.32883 -12.26031 -11.73421 -11.67716 -11.47755 -11.42593 -11.15392 -11.10787 -10.90191 -10.63558 -10.50054 -10.25473 -10.23578 -10.09431 -9.63656 -8.94576 -8.87743 -7.27822 -5.81821 -3.17405 -0.50372 2.14055 2.33552 2.55283 3.29478 3.30460 3.35902 3.38684 3.60043 3.93238 4.20477 4.31495 4.52581 4.52824 4.61370 4.65823 4.73351 4.80604 4.89181 5.05386 5.15403 5.19856 5.34119 5.48321 5.53831 5.61619 5.62009 5.66895 5.75008 5.84931 6.01189 6.08531 6.20679 6.23094 6.24476 6.42638 6.63634 6.75885 7.00034 7.66581 7.94792 8.37243 9.16217 9.88271 10.08080 11.36809 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.003061 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.474814 B = 9145.634634 C = 9783.031867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.593 5.593 6 C 0.543 3.457 7 O -0.534 6.534 8 C -0.662 4.662 9 S 2.456 3.544 10 C -0.663 4.663 11 O -0.920 6.920 12 O -0.923 6.923 13 C 0.100 3.900 14 C -0.132 4.132 15 C -0.094 4.094 16 H 0.072 0.928 17 C 0.162 3.838 18 N -0.756 5.756 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.027 0.973 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -12.632 20.598 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.007 4.007 5 N -0.325 5.325 6 C 0.329 3.671 7 O -0.412 6.412 8 C -0.789 4.789 9 S 2.632 3.368 10 C -0.812 4.812 11 O -0.917 6.917 12 O -0.920 6.920 13 C -0.022 4.022 14 C -0.170 4.170 15 C -0.113 4.113 16 H 0.091 0.909 17 C 0.035 3.965 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.192 0.808 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.715 -11.627 21.636 24.712 hybrid contribution 1.169 -1.733 -1.151 2.387 sum -1.546 -13.360 20.485 24.505 Atomic orbital electron populations 1.21900 0.94613 1.02034 1.01999 1.21408 0.96948 0.99731 0.93742 0.89470 1.21728 0.99861 0.79399 0.99756 1.47939 1.54981 1.11910 1.17715 1.19055 0.78191 0.86474 0.83368 1.90849 1.55050 1.64621 1.30651 1.30919 1.16897 1.04429 1.26631 1.07165 0.75979 0.77415 0.76240 1.30398 1.12315 1.25770 1.12728 1.93606 1.43320 1.69586 1.85228 1.93594 1.66155 1.85746 1.46522 1.21979 1.00886 0.95066 0.84318 1.22026 1.01994 0.96238 0.96782 1.21374 1.00316 0.94555 0.95024 0.90949 1.20700 0.96362 0.94932 0.84484 1.42731 1.57211 1.37565 1.02635 1.19066 1.24021 1.12348 0.81876 0.89266 1.24685 1.00255 0.99184 0.95126 1.69704 1.48318 1.43179 0.97059 0.86551 0.81279 0.83770 0.76932 1.21116 1.21718 1.20409 0.92698 0.92907 0.91630 0.88583 0.91061 0.82280 0.82127 0.85119 0.85234 0.84879 0.90669 0.89736 0.89870 0.90693 0.95133 0.95529 0.80784 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.38 37.16 0.31 -1.48 16 2 C -0.10 -1.14 2.71 -90.72 -0.25 -1.39 16 3 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 4 C 0.11 1.26 5.79 -3.93 -0.02 1.23 16 5 N -0.59 -6.29 2.42 -173.03 -0.42 -6.71 16 6 C 0.54 6.28 7.72 -10.98 -0.08 6.19 16 7 O -0.53 -8.28 15.04 2.56 0.04 -8.24 16 8 C -0.66 -4.20 4.64 36.01 0.17 -4.04 16 9 S 2.46 19.78 4.60 -107.50 -0.49 19.28 16 10 C -0.66 -1.98 10.62 101.05 1.07 -0.90 16 11 O -0.92 -11.51 17.95 -59.52 -1.07 -12.58 16 12 O -0.92 -11.27 17.95 -59.53 -1.07 -12.34 16 13 C 0.10 0.89 6.34 -3.71 -0.02 0.87 16 14 C -0.13 -1.56 4.90 -26.61 -0.13 -1.69 16 15 C -0.09 -1.25 1.96 -90.58 -0.18 -1.43 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 17 C 0.16 2.89 5.18 -4.04 -0.02 2.87 16 18 N -0.76 -16.92 5.12 -59.91 -0.31 -17.22 16 19 C -0.24 -6.70 10.47 -15.06 -0.16 -6.85 16 20 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 21 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 22 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 23 Si 0.88 21.20 27.74 -169.99 -4.71 16.48 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 27 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 30 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.16 0.42 7.94 -51.93 -0.41 0.00 16 33 H 0.16 0.52 7.69 -51.92 -0.40 0.13 16 34 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 35 H 0.13 0.11 8.14 -51.92 -0.42 -0.31 16 36 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 39 H 0.08 1.08 7.15 -51.93 -0.37 0.71 16 40 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 41 H 0.03 0.56 6.74 -51.92 -0.35 0.21 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.36 7.71 4.71 -40.82 -0.19 7.52 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -39.79 355.45 -8.08 -47.87 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.77 Total: 2.85 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 0.59 Total: -6.62 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.05 Total: -52.06 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -2.10 Total: -33.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.48 kcal Atomic # 16 Polarization: 19.78 SS G_CDS: -0.49 Total: 19.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.79 -8.08 -47.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184009172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.720 kcal (2) G-P(sol) polarization free energy of solvation -39.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds