Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49849 * 2 1 4 4 C 1.53188 * 109.49646 * 120.06363 * 2 1 3 5 5 N 1.46929 * 108.77645 * 174.61842 * 4 2 1 6 6 C 1.34771 * 120.63182 * 126.41350 * 5 4 2 7 7 O 1.21277 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00049 * 180.02562 * 6 5 4 9 9 S 1.81396 * 109.47167 * 179.97438 * 8 6 5 10 10 C 1.81400 * 101.92290 * 179.97438 * 9 8 6 11 11 O 1.42099 * 108.57671 * 294.48531 * 9 8 6 12 12 O 1.42101 * 108.57862 * 65.51363 * 9 8 6 13 13 C 1.46930 * 118.73732 * 306.39400 * 5 4 2 14 14 C 1.53186 * 108.77576 * 53.60420 * 13 5 4 15 15 C 1.53041 * 109.52119 * 239.91713 * 2 1 3 16 16 H 1.08997 * 109.46292 * 298.68808 * 15 2 1 17 17 C 1.52994 * 109.46164 * 58.65139 * 15 2 1 18 18 N 1.46501 * 109.47226 * 184.99618 * 17 15 2 19 19 C 1.36942 * 119.99738 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00039 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99556 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00246 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46863 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46832 * 119.99925 * 23 21 19 26 26 H 1.48496 * 109.47545 * 240.00340 * 23 21 19 27 27 H 1.09000 * 109.46996 * 300.00101 * 1 2 3 28 28 H 1.09004 * 109.46831 * 60.00032 * 1 2 3 29 29 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.59171 * 294.40467 * 4 2 1 31 31 H 1.09002 * 109.58959 * 54.83166 * 4 2 1 32 32 H 1.08995 * 109.47111 * 300.00307 * 8 6 5 33 33 H 1.09002 * 109.47121 * 59.99900 * 8 6 5 34 34 H 1.09007 * 109.47187 * 60.00114 * 10 9 8 35 35 H 1.08999 * 109.47454 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47101 * 300.00458 * 10 9 8 37 37 H 1.08992 * 109.58769 * 173.39532 * 13 5 4 38 38 H 1.09008 * 109.58720 * 293.81850 * 13 5 4 39 39 H 1.09000 * 109.49625 * 65.32030 * 14 13 5 40 40 H 1.09000 * 109.49684 * 185.38136 * 14 13 5 41 41 H 1.09005 * 109.46759 * 304.99744 * 17 15 2 42 42 H 1.08997 * 109.47511 * 64.99446 * 17 15 2 43 43 H 0.96995 * 120.00275 * 0.02562 * 18 17 15 44 44 H 0.97005 * 120.00252 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8281 1.1702 6 6 4.2807 -0.3849 2.1790 7 8 3.7723 0.1055 3.1648 8 6 5.7803 -0.4988 2.0822 9 16 6.5365 0.1801 3.5847 10 6 8.3044 -0.0575 3.2547 11 8 6.2685 1.5747 3.6360 12 8 6.1682 -0.6382 4.6865 13 6 4.1060 -1.4255 -0.0300 14 6 3.5715 -0.6943 -1.2653 15 6 2.0414 -0.7230 -1.2481 16 1 1.6978 -1.7573 -1.2351 17 6 1.5044 -0.0235 -2.4984 18 7 1.8945 -0.7834 -3.6887 19 6 1.5232 -0.3461 -4.9321 20 1 0.9425 0.5585 -5.0353 21 6 1.8932 -1.0659 -6.0600 22 7 2.6005 -2.1687 -5.9342 23 14 1.3862 -0.4699 -7.7562 24 1 0.6019 0.7843 -7.6262 25 1 2.5991 -0.2123 -8.5734 26 1 0.5549 -1.5076 -8.4175 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7633 -0.1576 2.1390 31 1 1.6057 -1.7214 1.2982 32 1 6.0590 -1.5473 1.9766 33 1 6.1318 0.0597 1.2147 34 1 8.5820 0.4874 2.3524 35 1 8.8850 0.3169 4.0979 36 1 8.5085 -1.1191 3.1153 37 1 5.1901 -1.3230 0.0148 38 1 3.8387 -2.4808 -0.0859 39 1 3.9161 0.3398 -1.2535 40 1 3.9350 -1.1885 -2.1663 41 1 0.4172 0.0337 -2.4439 42 1 1.9187 0.9829 -2.5579 43 1 2.4151 -1.5965 -3.5959 44 1 2.8588 -2.6718 -6.7223 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184009173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -95.207177 kcal Electronic energy + Delta-G solvation = -25405.808890 eV Core-core repulsion = 21678.945623 eV Total energy + Delta-G solvation = -3726.863267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52449 -38.25197 -37.22204 -36.22559 -35.15918 -33.77333 -32.12895 -31.04509 -30.36840 -29.77279 -26.99151 -26.40427 -23.82923 -22.65120 -21.48996 -20.32541 -19.44617 -18.97097 -17.82875 -17.10888 -16.93766 -16.62899 -16.19415 -15.59033 -15.51811 -14.88994 -14.56173 -14.09800 -13.98929 -13.79262 -13.67096 -13.60078 -13.58764 -13.06538 -12.89244 -12.59067 -12.54571 -12.27945 -12.21128 -12.01124 -11.93257 -11.72830 -11.40910 -11.10103 -11.04188 -10.95311 -10.87502 -10.50535 -10.45627 -10.25075 -10.15588 -9.97964 -9.69104 -8.92098 -8.78694 -6.95698 -5.82222 -3.10024 -0.44933 2.20532 2.38965 2.62692 3.39362 3.41927 3.45791 3.47450 3.65690 4.00503 4.26889 4.36533 4.54025 4.63954 4.67108 4.76425 4.85855 4.89379 4.99978 5.20258 5.21191 5.33054 5.42383 5.52467 5.64271 5.71351 5.78182 5.83036 5.89112 6.00348 6.13861 6.21581 6.25092 6.33533 6.43295 6.53438 6.77713 6.86979 7.08502 7.66504 7.73189 8.37327 9.48735 10.06486 10.41054 11.40837 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.002781 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.388728 B =10065.602514 C =10882.598314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.543 3.457 7 O -0.536 6.536 8 C -0.661 4.661 9 S 2.456 3.544 10 C -0.663 4.663 11 O -0.922 6.922 12 O -0.924 6.924 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.090 4.090 16 H 0.073 0.927 17 C 0.156 3.844 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.025 0.975 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.670 0.811 17.319 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.329 3.671 7 O -0.415 6.415 8 C -0.788 4.788 9 S 2.632 3.368 10 C -0.812 4.812 11 O -0.919 6.919 12 O -0.921 6.921 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.109 4.109 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.377 5.377 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.216 0.784 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.905 1.523 18.410 20.508 hybrid contribution 0.505 -0.502 -2.050 2.170 sum 9.410 1.021 16.360 18.901 Atomic orbital electron populations 1.21830 0.94146 1.02272 1.02214 1.21480 0.96357 1.00021 0.93957 0.90707 1.21836 0.77838 1.01375 0.99640 1.48014 1.07356 1.59560 1.17824 1.19075 0.86455 0.78277 0.83339 1.90842 1.74744 1.45178 1.30719 1.30906 1.05237 1.16070 1.26559 1.07157 0.77523 0.75858 0.76266 1.30395 1.26066 1.12021 1.12705 1.93601 1.83232 1.29769 1.85269 1.93592 1.81298 1.70568 1.46600 1.22008 0.98109 0.97900 0.84196 1.21962 0.96338 1.01209 0.97088 1.21351 0.94559 1.00312 0.94651 0.90841 1.20757 0.96771 0.94062 0.85543 1.42383 1.65381 1.29016 1.00874 1.19277 1.27459 1.06277 0.83799 0.91212 1.24719 1.00942 0.97543 0.97830 1.69655 1.42861 1.17389 1.28460 0.86130 0.77671 0.77786 0.84693 1.20577 1.21900 1.21878 0.92856 0.91207 0.92446 0.88775 0.90989 0.82221 0.82082 0.85118 0.84908 0.85187 0.89788 0.90543 0.91598 0.88998 0.95699 0.96511 0.78356 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.24 2.41 -90.50 -0.22 -1.46 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.11 1.38 5.72 -3.71 -0.02 1.36 16 5 N -0.60 -6.98 2.97 -172.77 -0.51 -7.49 16 6 C 0.54 6.77 7.72 -10.99 -0.08 6.69 16 7 O -0.54 -8.78 15.04 2.55 0.04 -8.74 16 8 C -0.66 -4.70 4.64 36.01 0.17 -4.53 16 9 S 2.46 21.18 4.60 -107.50 -0.49 20.69 16 10 C -0.66 -2.28 10.62 101.05 1.07 -1.21 16 11 O -0.92 -12.05 17.95 -59.52 -1.07 -13.12 16 12 O -0.92 -11.76 17.94 -59.53 -1.07 -12.83 16 13 C 0.10 1.01 6.34 -3.71 -0.02 0.99 16 14 C -0.13 -1.69 5.25 -26.61 -0.14 -1.82 16 15 C -0.09 -1.31 1.73 -90.58 -0.16 -1.46 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 2.94 5.41 -4.04 -0.02 2.92 16 18 N -0.73 -17.52 5.32 -59.91 -0.32 -17.84 16 19 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.16 0.54 7.94 -51.93 -0.41 0.13 16 33 H 0.16 0.65 7.69 -51.92 -0.40 0.25 16 34 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 37 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 38 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.39 7.15 -51.93 -0.37 1.02 16 41 H 0.03 0.48 6.14 -51.93 -0.32 0.16 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.38 9.47 6.84 -40.82 -0.28 9.19 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -38.62 362.61 -8.58 -47.21 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.98 Total: 3.32 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 0.66 Total: -7.02 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.11 Total: -51.89 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.10 Total: -34.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -0.49 Total: 20.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.62 -8.58 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184009173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.001 kcal (2) G-P(sol) polarization free energy of solvation -38.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds