Wall clock time and date at job start Tue Mar 31 2020 04:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.50703 * 109.47239 * 120.00245 * 2 1 3 5 5 O 1.21284 * 119.99772 * 342.12081 * 4 2 1 6 6 N 1.34775 * 119.99810 * 162.11613 * 4 2 1 7 7 C 1.46507 * 119.99662 * 183.96650 * 6 4 2 8 8 C 1.46492 * 120.00425 * 3.97252 * 6 4 2 9 9 C 1.53041 * 109.45913 * 245.91953 * 8 6 4 10 10 C 1.53199 * 109.31348 * 178.62524 * 9 8 6 11 11 N 1.46921 * 108.77574 * 54.63428 * 10 9 8 12 12 S 1.65597 * 120.63298 * 126.36810 * 11 10 9 13 13 O 1.42101 * 106.39943 * 336.45992 * 12 11 10 14 14 O 1.42100 * 106.40607 * 203.54088 * 12 11 10 15 15 C 1.76200 * 107.21793 * 90.00067 * 12 11 10 16 16 H 1.08003 * 120.00091 * 359.72462 * 15 12 11 17 17 C 1.37882 * 119.99898 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99898 * 359.72398 * 17 15 12 19 19 Si 1.86800 * 119.99858 * 179.72451 * 17 15 12 20 20 H 1.48502 * 109.47050 * 59.99862 * 19 17 15 21 21 H 1.48498 * 109.47284 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47000 * 300.00199 * 19 17 15 23 23 C 1.46929 * 118.74013 * 306.64426 * 11 10 9 24 24 C 1.52761 * 109.00837 * 53.30680 * 23 11 10 25 25 H 1.09008 * 109.47279 * 299.99549 * 1 2 3 26 26 H 1.09000 * 109.47638 * 60.00160 * 1 2 3 27 27 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46985 * 239.99881 * 2 1 3 29 29 H 1.09001 * 109.46910 * 184.51599 * 3 2 1 30 30 H 1.08991 * 109.47346 * 304.51461 * 3 2 1 31 31 H 1.09001 * 109.47105 * 64.52136 * 3 2 1 32 32 H 1.08995 * 109.47039 * 273.58494 * 7 6 4 33 33 H 1.08999 * 109.47176 * 33.58724 * 7 6 4 34 34 H 1.08995 * 109.47165 * 153.58484 * 7 6 4 35 35 H 1.09004 * 109.45921 * 5.88563 * 8 6 4 36 36 H 1.09007 * 109.49892 * 58.67498 * 9 8 6 37 37 H 1.08997 * 109.49818 * 298.57822 * 9 8 6 38 38 H 1.08996 * 109.58525 * 294.84573 * 10 9 8 39 39 H 1.08998 * 109.70506 * 174.49258 * 10 9 8 40 40 H 0.97000 * 119.99418 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.59149 * 173.13930 * 23 11 10 42 42 H 1.09004 * 109.58586 * 293.57168 * 23 11 10 43 43 H 1.08994 * 109.56643 * 185.55270 * 24 23 11 44 44 H 1.09005 * 109.35961 * 65.49792 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2920 -0.8837 2.1754 6 7 3.3042 -1.1534 1.2807 7 6 3.7677 -1.9198 2.4401 8 6 4.2234 -0.8684 0.1762 9 6 4.6056 -2.1768 -0.5195 10 6 5.5395 -1.8716 -1.6950 11 7 6.6840 -1.0945 -1.2003 12 16 8.2346 -1.5954 -1.4950 13 8 8.1670 -2.9961 -1.7246 14 8 9.0440 -1.0120 -0.4832 15 6 8.7381 -0.8653 -3.0175 16 1 8.0568 -0.2288 -3.5626 17 6 9.9998 -1.1116 -3.5162 18 7 10.8293 -1.8870 -2.8527 19 14 10.5309 -0.3437 -5.1341 20 1 10.4715 1.1359 -5.0229 21 1 11.9213 -0.7607 -5.4472 22 1 9.6220 -0.7954 -6.2183 23 6 6.4266 0.1323 -0.4338 24 6 5.4829 -0.1924 0.7227 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1269 1.4435 -0.0809 30 1 1.6121 1.9791 -0.8467 31 1 1.7442 1.9324 0.9277 32 1 4.1092 -1.2344 3.2158 33 1 2.9481 -2.5261 2.8260 34 1 4.5904 -2.5692 2.1411 35 1 3.7368 -0.2055 -0.5393 36 1 3.7057 -2.6693 -0.8881 37 1 5.1143 -2.8305 0.1890 38 1 5.0030 -1.2935 -2.4473 39 1 5.8936 -2.8040 -2.1348 40 1 11.7170 -2.0599 -3.2034 41 1 7.3656 0.5206 -0.0394 42 1 5.9639 0.8773 -1.0812 43 1 5.2075 0.7276 1.2383 44 1 5.9833 -0.8647 1.4196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:24 Heat of formation + Delta-G solvation = -134.504931 kcal Electronic energy + Delta-G solvation = -26371.570800 eV Core-core repulsion = 22643.003454 eV Total energy + Delta-G solvation = -3728.567346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50244 -38.19207 -35.37453 -35.16585 -34.69177 -34.02180 -33.11784 -30.91416 -30.70813 -27.85124 -27.12065 -26.16242 -24.20527 -23.16171 -22.55757 -20.30226 -18.93759 -18.76677 -17.51130 -17.38877 -16.40138 -15.82590 -15.61855 -15.11241 -15.05401 -14.49262 -14.36976 -14.31368 -13.84709 -13.67402 -13.41336 -13.16596 -13.15219 -12.66164 -12.48174 -12.32508 -12.12303 -12.09572 -12.04008 -11.65373 -11.40238 -11.29299 -11.24195 -11.15645 -11.11210 -10.87822 -10.74415 -10.65156 -10.35232 -10.18203 -10.13813 -9.71778 -9.28156 -8.99727 -8.70852 -8.32482 -6.74135 -5.37051 2.17941 2.53764 2.89396 3.05005 3.09911 3.14922 4.00972 4.25804 4.44925 4.59581 4.62370 4.64114 4.77435 4.85984 5.06034 5.09836 5.24985 5.32777 5.39569 5.45420 5.48799 5.51822 5.54099 5.60698 5.64670 5.70372 5.73580 5.78618 5.86912 5.90559 5.97359 6.02823 6.04499 6.09434 6.17531 6.29821 6.39609 6.46662 6.71317 7.27876 7.30700 7.49154 7.92013 8.08875 8.84484 10.19478 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.003580 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.563692 B = 7818.450037 C = 8310.402079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C -0.147 4.147 4 C 0.518 3.482 5 O -0.546 6.546 6 N -0.609 5.609 7 C 0.084 3.916 8 C 0.132 3.868 9 C -0.144 4.144 10 C 0.126 3.874 11 N -1.013 6.013 12 S 2.714 3.286 13 O -1.003 7.003 14 O -1.003 7.003 15 C -1.022 5.022 16 H 0.102 0.898 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.920 3.080 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.264 1.264 23 C 0.126 3.874 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.292 0.708 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.224 4.747 2.836 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 C -0.205 4.205 4 C 0.306 3.694 5 O -0.424 6.424 6 N -0.341 5.341 7 C -0.059 4.059 8 C 0.029 3.971 9 C -0.184 4.184 10 C -0.001 4.001 11 N -0.848 5.848 12 S 2.816 3.184 13 O -0.994 6.994 14 O -0.993 6.993 15 C -1.155 5.155 16 H 0.120 0.880 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.001 4.001 24 C -0.181 4.181 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.950 3.971 3.969 15.969 hybrid contribution 0.356 0.676 -1.365 1.564 sum -14.594 4.646 2.604 15.536 Atomic orbital electron populations 1.21621 0.92573 1.02514 1.02269 1.21330 0.98181 0.97616 0.96754 1.21864 1.01779 0.93836 1.02986 1.20721 0.81122 0.78477 0.89082 1.90667 1.55953 1.57359 1.38375 1.48043 1.10869 1.54450 1.20716 1.21607 1.00486 0.95893 0.87917 1.21405 0.90261 0.97383 0.88035 1.22318 1.00025 0.97077 0.98973 1.21197 0.87350 0.96886 0.94624 1.58237 1.23939 1.34432 1.68176 1.00522 0.69134 0.73205 0.75555 1.93349 1.85096 1.33115 1.87800 1.93349 1.65396 1.79328 1.61257 1.30597 1.08459 1.46177 1.30284 0.87988 1.24755 0.94268 0.91245 0.98259 1.69884 1.08386 1.30835 1.38444 0.86208 0.78041 0.80154 0.81212 1.18835 1.20101 1.18832 1.21112 1.00366 0.86836 0.91746 1.22202 0.95476 1.01216 0.99236 0.91706 0.91979 0.92402 0.88722 0.91526 0.91194 0.92024 0.92748 0.91067 0.90763 0.88232 0.90851 0.90889 0.92081 0.88367 0.89790 0.88330 0.92109 0.90744 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.63 37.16 0.32 -0.86 16 2 C -0.12 -1.11 2.39 -91.77 -0.22 -1.32 16 3 C -0.15 -1.19 8.87 37.16 0.33 -0.86 16 4 C 0.52 6.46 6.86 -10.98 -0.08 6.38 16 5 O -0.55 -8.60 15.69 5.55 0.09 -8.51 16 6 N -0.61 -7.11 2.76 -173.89 -0.48 -7.59 16 7 C 0.08 0.94 9.27 59.85 0.55 1.49 16 8 C 0.13 1.49 1.78 -67.89 -0.12 1.37 16 9 C -0.14 -1.79 5.42 -26.61 -0.14 -1.93 16 10 C 0.13 1.90 6.48 -3.71 -0.02 1.88 16 11 N -1.01 -18.55 3.30 -113.77 -0.37 -18.92 16 12 S 2.71 68.53 5.01 -107.50 -0.54 67.99 16 13 O -1.00 -27.93 16.61 -57.17 -0.95 -28.88 16 14 O -1.00 -27.92 16.60 -57.17 -0.95 -28.87 16 15 C -1.02 -27.10 9.75 30.60 0.30 -26.81 16 16 H 0.10 2.46 7.81 -52.48 -0.41 2.05 16 17 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 18 N -0.85 -24.35 13.19 55.43 0.73 -23.62 16 19 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C 0.13 1.90 6.45 -3.93 -0.03 1.87 16 24 C -0.14 -1.76 5.22 -26.83 -0.14 -1.90 16 25 H 0.06 0.64 7.92 -51.92 -0.41 0.23 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.78 7.08 -51.93 -0.37 0.41 16 29 H 0.07 0.53 6.31 -51.93 -0.33 0.21 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.83 7.59 -51.93 -0.39 0.43 16 34 H 0.07 0.79 6.63 -51.93 -0.34 0.44 16 35 H 0.10 0.97 4.31 -51.93 -0.22 0.74 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.64 6.92 -51.93 -0.36 1.28 16 40 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.10 1.64 6.91 -51.93 -0.36 1.28 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -35.11 358.11 -8.33 -43.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.89 Total: 1.78 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 0.66 Total: -17.17 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.12 Total: -50.13 kcal Atomic # 8 Polarization: -64.45 SS G_CDS: -1.81 Total: -66.26 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 68.53 SS G_CDS: -0.54 Total: 67.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.11 -8.33 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.071 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds