Wall clock time and date at job start Tue Mar 31 2020 05:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47034 * 2 1 4 4 S 1.81401 * 109.47125 * 179.97438 * 3 2 1 5 5 O 1.42110 * 108.57503 * 65.51340 * 4 3 2 6 6 O 1.42098 * 108.57937 * 294.49004 * 4 3 2 7 7 C 1.81395 * 101.92232 * 179.97438 * 4 3 2 8 8 C 1.50705 * 109.47008 * 180.02562 * 7 4 3 9 9 O 1.21280 * 120.00079 * 359.97438 * 8 7 4 10 10 N 1.34772 * 119.99715 * 180.02562 * 8 7 4 11 11 C 1.46501 * 119.99794 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.88654 * 37.42485 * 11 10 8 13 13 C 1.54912 * 111.00258 * 273.54330 * 11 10 8 14 14 N 1.47426 * 104.83023 * 204.87571 * 13 11 10 15 15 C 1.36942 * 125.64723 * 204.09048 * 14 13 11 16 16 H 1.08001 * 119.99606 * 168.16098 * 15 14 13 17 17 C 1.38816 * 119.99979 * 348.16669 * 15 14 13 18 18 N 1.31619 * 119.99549 * 326.25223 * 17 15 14 19 19 Si 1.86798 * 119.99876 * 145.98230 * 17 15 14 20 20 H 1.48493 * 109.47224 * 59.99521 * 19 17 15 21 21 H 1.48498 * 109.46688 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46793 * 299.99425 * 19 17 15 23 23 C 1.47024 * 108.70412 * 24.36134 * 14 13 11 24 24 C 1.54331 * 107.26485 * 358.58104 * 23 14 13 25 25 H 1.08996 * 110.66820 * 96.52184 * 24 23 14 26 26 C 1.52998 * 110.85278 * 219.67552 * 24 23 14 27 27 H 1.09000 * 109.47182 * 59.99968 * 1 2 3 28 28 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47140 * 300.00068 * 1 2 3 30 30 H 1.08995 * 109.46426 * 239.99860 * 2 1 3 31 31 H 1.09000 * 109.47182 * 120.00032 * 2 1 3 32 32 H 1.09005 * 109.47212 * 59.99976 * 3 2 1 33 33 H 1.09000 * 109.47162 * 300.00043 * 3 2 1 34 34 H 1.08996 * 109.47387 * 60.00368 * 7 4 3 35 35 H 1.09007 * 109.47507 * 300.00150 * 7 4 3 36 36 H 0.97002 * 120.00483 * 359.97438 * 10 8 7 37 37 H 1.08998 * 110.36593 * 86.04321 * 13 11 10 38 38 H 1.08997 * 110.46484 * 323.76420 * 13 11 10 39 39 H 0.97003 * 120.00486 * 353.97561 * 18 17 15 40 40 H 1.09001 * 109.88261 * 118.12611 * 23 14 13 41 41 H 1.08999 * 109.87760 * 239.29600 * 23 14 13 42 42 H 1.09000 * 109.47248 * 173.69238 * 26 24 23 43 43 H 1.08999 * 109.46789 * 293.69496 * 26 24 23 44 44 H 1.08999 * 109.46849 * 53.69174 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3072 0.8840 -1.2249 6 8 4.3063 0.8843 1.2268 7 6 4.2287 3.2173 -0.0001 8 6 5.7227 3.4153 -0.0003 9 8 6.4619 2.4538 0.0007 10 7 6.2374 4.6609 -0.0004 11 6 7.6897 4.8534 0.0001 12 1 8.1814 4.1026 -0.6185 13 6 8.2513 4.8380 1.4437 14 7 9.5025 5.6144 1.3701 15 6 10.5629 5.5024 2.2294 16 1 11.5057 5.9703 1.9873 17 6 10.4260 4.7876 3.4114 18 7 9.2742 4.7838 4.0484 19 14 11.8741 3.8250 4.0938 20 1 13.0018 4.7525 4.3640 21 1 11.4718 3.1545 5.3563 22 1 12.2998 2.8032 3.1039 23 6 9.4206 6.5332 0.2253 24 6 8.0618 6.2865 -0.4637 25 1 7.3200 7.0076 -0.1206 26 6 8.2048 6.3428 -1.9859 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8008 3.6795 0.8894 35 1 3.8014 3.6785 -0.8906 36 1 5.6462 5.4300 -0.0008 37 1 8.4575 3.8155 1.7597 38 1 7.5503 5.3125 2.1304 39 1 8.5480 5.3487 3.7411 40 1 9.4804 7.5646 0.5727 41 1 10.2312 6.3275 -0.4738 42 1 7.2613 6.0563 -2.4504 43 1 8.4660 7.3567 -2.2891 44 1 8.9892 5.6555 -2.3028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211099993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:08 Heat of formation + Delta-G solvation = -89.822367 kcal Electronic energy + Delta-G solvation = -25364.323925 eV Core-core repulsion = 21637.694160 eV Total energy + Delta-G solvation = -3726.629764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.91055 -37.85485 -37.04714 -36.09310 -35.23349 -34.26853 -32.95881 -30.82215 -30.41010 -28.17769 -27.57827 -25.54417 -23.73086 -22.41070 -21.08300 -20.33567 -19.79577 -18.94493 -17.59914 -17.54349 -16.79111 -16.65792 -16.22374 -15.69704 -15.56090 -14.87975 -14.51470 -14.12568 -13.95510 -13.67719 -13.42898 -13.24117 -13.06472 -12.97133 -12.95575 -12.69447 -12.51560 -12.09064 -12.02815 -11.87892 -11.84569 -11.58364 -11.33815 -11.22032 -10.93606 -10.76343 -10.67665 -10.64508 -10.43010 -10.13025 -10.08784 -9.92999 -9.63997 -8.84870 -8.30630 -6.96251 -6.12562 -3.06659 -0.32190 2.47872 2.55566 2.93548 3.54978 3.63017 3.64048 3.78255 3.79619 4.16180 4.26015 4.38800 4.63427 4.63936 4.69069 4.83668 4.90306 4.93472 5.09450 5.14868 5.20342 5.21746 5.30695 5.52898 5.55032 5.61609 5.72254 5.74442 5.80554 5.92920 6.00852 6.16268 6.26116 6.44927 6.56333 6.74784 6.93157 7.05682 7.44518 7.80124 8.11297 8.50201 9.01345 9.83802 10.37297 11.21701 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003373 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.642386 B = 8299.590683 C = 9503.054204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.621 4.621 4 S 2.449 3.551 5 O -0.920 6.920 6 O -0.913 6.913 7 C -0.661 4.661 8 C 0.538 3.462 9 O -0.522 6.522 10 N -0.703 5.703 11 C 0.126 3.874 12 H 0.099 0.901 13 C 0.139 3.861 14 N -0.600 5.600 15 C -0.348 4.348 16 H 0.069 0.931 17 C -0.019 4.019 18 N -0.904 5.904 19 Si 1.056 2.944 20 H -0.293 1.293 21 H -0.285 1.285 22 H -0.292 1.292 23 C 0.142 3.858 24 C -0.109 4.109 25 H 0.076 0.924 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.400 0.600 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.026 0.974 41 H 0.031 0.969 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 -0.879 -11.890 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.749 4.749 4 S 2.626 3.374 5 O -0.917 6.917 6 O -0.910 6.910 7 C -0.788 4.788 8 C 0.321 3.679 9 O -0.398 6.398 10 N -0.353 5.353 11 C 0.021 3.979 12 H 0.117 0.883 13 C 0.012 3.988 14 N -0.328 5.328 15 C -0.475 4.475 16 H 0.087 0.913 17 C -0.222 4.222 18 N -0.543 5.543 19 Si 0.886 3.114 20 H -0.220 1.220 21 H -0.211 1.211 22 H -0.220 1.220 23 C 0.016 3.984 24 C -0.129 4.129 25 H 0.094 0.906 26 C -0.196 4.196 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.234 0.766 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.334 -3.279 -10.612 21.436 hybrid contribution -1.463 2.574 -1.148 3.175 sum -19.797 -0.706 -11.761 23.037 Atomic orbital electron populations 1.21730 0.93902 1.02424 1.02290 1.21279 0.98345 0.91800 1.04254 1.30503 1.26263 1.06563 1.11581 1.07549 0.77348 0.76514 0.75976 1.93580 1.78549 1.73681 1.45908 1.93618 1.78323 1.73498 1.45572 1.30882 1.03588 1.31160 1.13175 1.19045 0.87241 0.84484 0.77091 1.90901 1.60454 1.39399 1.49087 1.45750 1.08492 1.06934 1.74142 1.22545 0.78095 0.97218 1.00072 0.88303 1.21798 0.88421 0.97252 0.91321 1.44451 1.16493 1.40699 1.31122 1.19652 0.89353 1.37144 1.01352 0.91348 1.25696 1.02835 1.00830 0.92843 1.70810 1.05746 1.41047 1.36702 0.83660 0.74792 0.76932 0.76052 1.22026 1.21060 1.21959 1.21361 0.93008 0.93902 0.90131 1.22433 0.99209 0.95569 0.95678 0.90577 1.21753 1.01575 1.01790 0.94491 0.92308 0.91843 0.92223 0.90023 0.89908 0.84812 0.84956 0.82268 0.82512 0.76601 0.92197 0.95676 0.92244 0.95658 0.95077 0.92982 0.92522 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.84 5.94 -26.73 -0.16 -1.00 16 3 C -0.62 -3.73 5.81 37.16 0.22 -3.51 16 4 S 2.45 28.26 3.96 -107.50 -0.43 27.83 16 5 O -0.92 -13.96 17.94 -59.54 -1.07 -15.03 16 6 O -0.91 -15.01 17.95 -59.51 -1.07 -16.07 16 7 C -0.66 -6.07 6.29 36.01 0.23 -5.84 16 8 C 0.54 8.54 7.85 -10.98 -0.09 8.45 16 9 O -0.52 -11.09 15.37 2.56 0.04 -11.05 16 10 N -0.70 -10.28 5.23 -51.72 -0.27 -10.55 16 11 C 0.13 2.33 2.77 -65.78 -0.18 2.15 16 12 H 0.10 2.01 7.63 -51.93 -0.40 1.62 16 13 C 0.14 3.37 5.03 -2.53 -0.01 3.36 16 14 N -0.60 -15.59 3.33 -170.06 -0.57 -16.16 16 15 C -0.35 -10.12 9.97 -15.06 -0.15 -10.27 16 16 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 17 C -0.02 -0.57 4.96 -17.43 -0.09 -0.66 16 18 N -0.90 -28.15 12.86 55.49 0.71 -27.44 16 19 Si 1.06 26.45 30.03 -169.99 -5.10 21.34 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.14 2.92 6.85 -3.06 -0.02 2.90 16 24 C -0.11 -1.75 3.16 -88.78 -0.28 -2.03 16 25 H 0.08 1.08 7.99 -51.93 -0.42 0.67 16 26 C -0.14 -1.77 9.16 37.16 0.34 -1.43 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.16 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.16 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.40 4.17 8.52 -40.82 -0.35 3.82 16 37 H 0.06 1.70 7.81 -51.93 -0.41 1.30 16 38 H 0.03 0.64 7.02 -51.93 -0.36 0.27 16 39 H 0.27 8.28 6.43 -40.82 -0.26 8.02 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.64 7.77 -51.93 -0.40 0.23 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.81 8.07 -51.93 -0.42 0.40 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -41.56 372.64 -9.27 -50.82 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.30 Total: -1.02 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 0.17 Total: -8.29 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.12 Total: -54.15 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.10 Total: -42.16 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.10 Total: 21.34 kcal Atomic # 16 Polarization: 28.26 SS G_CDS: -0.43 Total: 27.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -41.56 -9.27 -50.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211099993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.998 kcal (2) G-P(sol) polarization free energy of solvation -41.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds