Wall clock time and date at job start Tue Mar 31 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47205 * 2 1 4 4 S 1.81401 * 109.47476 * 120.00170 * 2 1 3 5 5 O 1.42100 * 108.57760 * 70.51004 * 4 2 1 6 6 O 1.42100 * 108.57635 * 299.48873 * 4 2 1 7 7 C 1.81395 * 101.92562 * 185.00037 * 4 2 1 8 8 C 1.50695 * 109.47307 * 180.02562 * 7 4 2 9 9 O 1.21277 * 120.00067 * 0.02562 * 8 7 4 10 10 N 1.34775 * 120.00063 * 180.02562 * 8 7 4 11 11 C 1.46930 * 120.63050 * 359.97375 * 10 8 7 12 12 C 1.53195 * 108.77695 * 233.63227 * 11 10 8 13 13 C 1.53045 * 109.30969 * 305.36626 * 12 11 10 14 14 C 1.53033 * 109.54155 * 61.36742 * 13 12 11 15 15 H 1.09005 * 109.52577 * 58.59455 * 14 13 12 16 16 N 1.46494 * 109.50279 * 178.68377 * 14 13 12 17 17 C 1.36945 * 119.99612 * 274.83869 * 16 14 13 18 18 H 1.07999 * 120.00077 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99637 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99539 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00216 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46712 * 90.00052 * 21 19 17 23 23 H 1.48499 * 109.46916 * 209.99467 * 21 19 17 24 24 H 1.48492 * 109.46909 * 330.00070 * 21 19 17 25 25 C 1.46926 * 120.63095 * 179.97438 * 10 8 7 26 26 H 1.09001 * 109.46813 * 299.99650 * 1 2 3 27 27 H 1.08996 * 109.46987 * 60.00029 * 1 2 3 28 28 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46962 * 239.99953 * 2 1 3 30 30 H 1.09001 * 109.47399 * 300.00272 * 3 2 1 31 31 H 1.09007 * 109.47198 * 60.00098 * 3 2 1 32 32 H 1.09008 * 109.47601 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47164 * 59.99575 * 7 4 2 34 34 H 1.09006 * 109.46805 * 300.00264 * 7 4 2 35 35 H 1.08994 * 109.58642 * 353.41859 * 11 10 8 36 36 H 1.08997 * 109.58627 * 113.84647 * 11 10 8 37 37 H 1.08998 * 109.49634 * 65.31857 * 12 11 10 38 38 H 1.08999 * 109.49768 * 185.37935 * 12 11 10 39 39 H 1.08995 * 109.45857 * 301.33806 * 13 12 11 40 40 H 1.09004 * 109.45360 * 181.38686 * 13 12 11 41 41 H 0.96995 * 120.00290 * 95.10760 * 16 14 13 42 42 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58612 * 6.58376 * 25 10 8 44 44 H 1.09005 * 109.70347 * 246.22039 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1348 -0.8552 1.4811 5 8 1.8620 -2.2431 1.3455 6 8 1.6606 -0.1637 2.6284 7 6 3.9266 -0.6032 1.3540 8 6 4.6106 -1.2601 2.5251 9 8 3.9540 -1.8416 3.3627 10 7 5.9520 -1.2016 2.6416 11 6 6.7611 -0.5014 1.6346 12 6 7.8434 -1.4561 1.1208 13 6 8.6457 -1.9968 2.3065 14 6 7.7170 -2.7769 3.2398 15 1 7.2498 -3.5937 2.6896 16 7 8.4916 -3.3207 4.3580 17 6 9.1408 -4.5188 4.2227 18 1 9.0814 -5.0630 3.2917 19 6 9.8752 -5.0338 5.2821 20 7 10.4996 -6.1851 5.1518 21 14 9.9785 -4.0921 6.8921 22 1 8.8670 -4.5116 7.7830 23 1 11.2773 -4.3805 7.5517 24 1 9.8733 -2.6358 6.6213 25 6 6.6332 -1.8367 3.7780 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 4.1445 0.4648 1.3578 34 1 4.2907 -1.0449 0.4264 35 1 6.1246 -0.1907 0.8061 36 1 7.2297 0.3731 2.0860 37 1 7.3751 -2.2850 0.5900 38 1 8.5093 -0.9207 0.4441 39 1 9.0934 -1.1657 2.8512 40 1 9.4323 -2.6574 1.9416 41 1 8.5414 -2.8339 5.1956 42 1 11.0125 -6.5452 5.8923 43 1 5.9123 -2.4072 4.3636 44 1 7.0912 -1.0724 4.4058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211141699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:24 Heat of formation + Delta-G solvation = -90.312208 kcal Electronic energy + Delta-G solvation = -25605.556137 eV Core-core repulsion = 21878.905132 eV Total energy + Delta-G solvation = -3726.651006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.30401 -37.66112 -37.20474 -36.18485 -35.56569 -34.77338 -32.45021 -31.63477 -30.91987 -28.72359 -27.74416 -25.27037 -23.71959 -23.05822 -22.09290 -20.49040 -19.36274 -18.86139 -17.94471 -17.71593 -16.83737 -16.69087 -16.35246 -15.60058 -15.36788 -14.91349 -14.65592 -14.23997 -14.23002 -13.84429 -13.75516 -13.65454 -13.36241 -13.30949 -12.88670 -12.83019 -12.62704 -12.51336 -12.22052 -12.14804 -11.98925 -11.93668 -11.61273 -11.19237 -11.16917 -11.04125 -10.77560 -10.61782 -10.57889 -10.52624 -10.16427 -10.13219 -9.62341 -8.97528 -8.68190 -7.33665 -5.80028 -3.17268 -0.42141 2.31054 2.42689 2.70222 3.36321 3.40031 3.43790 3.45408 3.63322 3.99506 4.03525 4.10212 4.50447 4.56725 4.57967 4.62992 4.74025 4.92101 4.95518 4.98288 5.08999 5.11942 5.21969 5.25828 5.34613 5.42243 5.46042 5.51669 5.58680 5.61030 5.79688 5.94721 5.99590 6.21341 6.32687 6.40714 6.70525 6.86839 7.20206 7.84874 7.94870 8.38033 9.15210 9.87543 10.05834 11.37898 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.003013 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.174906 B = 9292.138764 C = 9702.541783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.584 4.584 3 C -0.148 4.148 4 S 2.450 3.550 5 O -0.918 6.918 6 O -0.917 6.917 7 C -0.660 4.660 8 C 0.541 3.459 9 O -0.529 6.529 10 N -0.593 5.593 11 C 0.103 3.897 12 C -0.135 4.135 13 C -0.138 4.138 14 C 0.172 3.828 15 H 0.061 0.939 16 N -0.744 5.744 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.099 3.901 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.098 0.902 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 19.963 -15.743 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.692 4.692 3 C -0.206 4.206 4 S 2.626 3.374 5 O -0.915 6.915 6 O -0.914 6.914 7 C -0.788 4.788 8 C 0.326 3.674 9 O -0.407 6.407 10 N -0.325 5.325 11 C -0.020 4.020 12 C -0.174 4.174 13 C -0.179 4.179 14 C 0.061 3.939 15 H 0.079 0.921 16 N -0.387 5.387 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.023 4.023 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.122 18.963 -14.713 28.914 hybrid contribution 0.956 1.065 0.276 1.457 sum -15.166 20.028 -14.438 28.975 Atomic orbital electron populations 1.21631 0.89586 1.04100 1.04774 1.30204 1.07487 1.09836 1.21714 1.21782 1.01435 0.92216 1.05199 1.07713 0.76553 0.76096 0.77026 1.93595 1.82029 1.29521 1.86305 1.93568 1.77177 1.75694 1.44954 1.30919 1.28438 1.11795 1.07612 1.19047 0.82977 0.80224 0.85157 1.90871 1.63712 1.43672 1.42433 1.47920 1.04915 1.53834 1.25857 1.21904 0.93690 0.95403 0.91031 1.21954 0.97323 0.99093 0.99021 1.22261 0.99473 1.00335 0.95817 1.20470 0.89908 0.93765 0.89720 0.92086 1.42656 1.60067 1.24176 1.11782 1.19022 1.23166 0.94943 1.00391 0.89133 1.24673 0.99614 0.96802 0.97827 1.69703 1.36917 1.19227 1.32043 0.86554 0.77370 0.79551 0.85059 1.20896 1.21709 1.20314 1.22166 0.96113 0.96612 0.87436 0.90513 0.89945 0.90779 0.84394 0.90064 0.90258 0.91156 0.82285 0.82212 0.90040 0.90827 0.91477 0.90904 0.92444 0.90851 0.80524 0.92969 0.88325 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.19 37.16 0.34 -0.47 16 2 C -0.58 -3.14 3.35 -26.74 -0.09 -3.23 16 3 C -0.15 -0.53 8.90 37.15 0.33 -0.20 16 4 S 2.45 26.01 3.50 -107.50 -0.38 25.63 16 5 O -0.92 -13.73 17.94 -59.55 -1.07 -14.80 16 6 O -0.92 -12.95 17.91 -59.51 -1.07 -14.02 16 7 C -0.66 -5.49 4.03 36.00 0.15 -5.35 16 8 C 0.54 7.79 7.72 -10.99 -0.08 7.71 16 9 O -0.53 -10.15 15.04 2.56 0.04 -10.11 16 10 N -0.59 -8.03 2.97 -172.74 -0.51 -8.55 16 11 C 0.10 0.97 6.34 -3.71 -0.02 0.94 16 12 C -0.14 -1.49 6.08 -26.61 -0.16 -1.65 16 13 C -0.14 -2.16 5.47 -26.69 -0.15 -2.30 16 14 C 0.17 3.23 2.92 -67.79 -0.20 3.03 16 15 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 16 N -0.74 -17.31 4.93 -53.29 -0.26 -17.57 16 17 C -0.25 -6.84 10.41 -15.06 -0.16 -7.00 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 21 Si 0.88 22.05 27.73 -169.99 -4.71 17.34 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 C 0.10 1.64 5.91 -3.68 -0.02 1.62 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.14 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.10 6.39 -51.92 -0.33 -0.23 16 33 H 0.16 0.67 6.57 -51.93 -0.34 0.33 16 34 H 0.16 0.74 7.69 -51.92 -0.40 0.34 16 35 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.10 1.85 7.00 -51.93 -0.36 1.49 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -39.62 361.96 -8.95 -48.58 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.06 Total: 3.24 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.16 Total: -6.80 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.00 Total: -54.52 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.10 Total: -38.93 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: 26.01 SS G_CDS: -0.38 Total: 25.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.62 -8.95 -48.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211141699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.735 kcal (2) G-P(sol) polarization free energy of solvation -39.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds