Wall clock time and date at job start Tue Mar 31 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47014 * 2 1 4 4 C 1.53000 * 109.46852 * 119.99822 * 2 1 3 5 5 S 1.81405 * 109.47014 * 295.00282 * 4 2 1 6 6 C 1.81406 * 101.91797 * 180.02562 * 5 4 2 7 7 O 1.42100 * 108.57621 * 294.48359 * 5 4 2 8 8 O 1.42099 * 108.57956 * 65.51501 * 5 4 2 9 9 C 1.50701 * 109.47523 * 239.99946 * 2 1 3 10 10 O 1.21272 * 120.00004 * 240.00324 * 9 2 1 11 11 N 1.34775 * 119.99938 * 59.99981 * 9 2 1 12 12 C 1.46497 * 119.99978 * 180.02562 * 11 9 2 13 13 H 1.08999 * 110.64201 * 31.85995 * 12 11 9 14 14 C 1.54332 * 110.84853 * 268.69290 * 12 11 9 15 15 N 1.47029 * 107.26368 * 219.67300 * 14 12 11 16 16 C 1.36933 * 125.64512 * 178.85299 * 15 14 12 17 17 H 1.08006 * 120.00013 * 189.98651 * 16 15 14 18 18 C 1.38816 * 120.00540 * 9.98300 * 16 15 14 19 19 N 1.31610 * 120.00440 * 194.85994 * 18 16 15 20 20 Si 1.86798 * 119.99659 * 14.85890 * 18 16 15 21 21 H 1.48493 * 109.47151 * 174.71728 * 20 18 16 22 22 H 1.48498 * 109.47066 * 294.71539 * 20 18 16 23 23 H 1.48499 * 109.47366 * 54.71107 * 20 18 16 24 24 C 1.47425 * 108.70387 * 358.58343 * 15 14 12 25 25 C 1.54912 * 104.82957 * 24.36003 * 24 15 14 26 26 H 1.08997 * 111.00732 * 81.09831 * 25 24 15 27 27 C 1.52998 * 111.00398 * 204.91525 * 25 24 15 28 28 H 1.08994 * 109.47434 * 300.00720 * 1 2 3 29 29 H 1.09007 * 109.46758 * 60.00350 * 1 2 3 30 30 H 1.08992 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47145 * 54.99961 * 4 2 1 32 32 H 1.09005 * 109.47082 * 175.00458 * 4 2 1 33 33 H 1.09000 * 109.47007 * 59.99866 * 6 5 4 34 34 H 1.09000 * 109.46827 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47272 * 299.99697 * 6 5 4 36 36 H 0.97002 * 119.99791 * 0.02562 * 11 9 2 37 37 H 1.08997 * 109.99246 * 100.19912 * 14 12 11 38 38 H 1.08994 * 109.78153 * 339.02776 * 14 12 11 39 39 H 0.97004 * 120.00186 * 355.02219 * 19 18 16 40 40 H 1.09003 * 110.36186 * 143.19392 * 24 15 14 41 41 H 1.08997 * 110.36913 * 265.40996 * 24 15 14 42 42 H 1.08998 * 109.47506 * 58.54192 * 27 25 24 43 43 H 1.08992 * 109.47420 * 178.54430 * 27 25 24 44 44 H 1.09004 * 109.46931 * 298.54481 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 1.5599 0.2157 2.7266 6 6 2.2550 -0.8019 4.0578 7 8 2.2380 1.4644 2.7109 8 8 0.1431 0.1968 2.8342 9 6 2.0324 -0.7104 -1.2304 10 8 2.7296 -1.6964 -1.1191 11 7 1.7069 -0.2500 -2.4545 12 6 2.1949 -0.9409 -3.6507 13 1 2.2914 -2.0104 -3.4641 14 6 3.5399 -0.3459 -4.1183 15 7 3.5077 -0.2961 -5.5874 16 6 4.5044 0.1889 -6.3914 17 1 4.3252 0.3323 -7.4468 18 6 5.7453 0.4961 -5.8502 19 7 6.6004 1.2244 -6.5361 20 14 6.2012 -0.1241 -4.1482 21 1 7.6137 0.2280 -3.8551 22 1 5.3141 0.5059 -3.1377 23 1 6.0382 -1.5993 -4.0988 24 6 2.2274 -0.8606 -6.0517 25 6 1.2570 -0.6767 -4.8582 26 1 0.8597 0.3379 -4.8304 27 6 0.1250 -1.7046 -4.9085 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7994 1.2057 33 1 3.3350 -0.8774 3.9314 34 1 2.0327 -0.3418 5.0207 35 1 1.8144 -1.7983 4.0214 36 1 1.1495 0.5389 -2.5435 37 1 4.3628 -0.9792 -3.7869 38 1 3.6582 0.6600 -3.7158 39 1 6.3936 1.4858 -7.4471 40 1 1.8655 -0.3140 -6.9225 41 1 2.3430 -1.9180 -6.2894 42 1 0.5459 -2.7099 -4.8921 43 1 -0.5270 -1.5697 -4.0455 44 1 -0.4507 -1.5667 -5.8238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211378764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:26 Heat of formation + Delta-G solvation = -75.143120 kcal Electronic energy + Delta-G solvation = -25771.904666 eV Core-core repulsion = 22045.911442 eV Total energy + Delta-G solvation = -3725.993224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.16240 -38.10709 -37.33361 -36.42223 -34.86913 -34.20611 -32.77439 -31.04909 -30.15065 -28.43436 -27.54006 -26.11581 -24.46874 -22.73073 -20.80318 -20.51419 -19.67106 -19.20831 -17.79479 -17.50537 -16.72719 -16.50368 -16.26174 -16.05244 -15.50378 -15.09272 -14.67483 -14.02809 -13.86582 -13.64394 -13.60744 -13.44362 -13.28544 -13.08413 -13.00799 -12.95818 -12.58413 -12.31822 -12.07857 -12.00856 -11.87552 -11.76532 -11.63121 -11.40521 -11.22032 -11.05570 -10.92856 -10.73080 -10.52411 -10.05954 -9.76451 -9.52203 -9.10333 -8.83351 -8.55505 -7.08455 -6.29352 -3.23303 -0.40199 2.35305 2.60127 3.03335 3.34175 3.44620 3.53410 3.64901 3.71999 4.03157 4.32068 4.38303 4.51781 4.58055 4.60324 4.75642 4.87697 4.96127 5.08218 5.16015 5.23047 5.25240 5.30435 5.45183 5.47859 5.59469 5.67215 5.70226 5.82169 5.88939 5.92634 6.06088 6.21752 6.31648 6.39785 6.48043 6.71554 6.80008 7.51981 7.64808 8.21488 8.32392 9.03526 9.55382 10.20996 11.20019 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003718 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.772391 B = 7529.683476 C = 8680.408205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.100 4.100 3 H 0.114 0.886 4 C -0.593 4.593 5 S 2.420 3.580 6 C -0.655 4.655 7 O -0.937 6.937 8 O -0.936 6.936 9 C 0.524 3.476 10 O -0.536 6.536 11 N -0.713 5.713 12 C 0.136 3.864 13 H 0.098 0.902 14 C 0.102 3.898 15 N -0.612 5.612 16 C -0.323 4.323 17 H 0.080 0.920 18 C -0.023 4.023 19 N -0.929 5.929 20 Si 1.075 2.925 21 H -0.301 1.301 22 H -0.288 1.288 23 H -0.298 1.298 24 C 0.141 3.859 25 C -0.112 4.112 26 H 0.082 0.918 27 C -0.137 4.137 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.401 0.599 37 H 0.035 0.965 38 H 0.050 0.950 39 H 0.261 0.739 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 -4.901 18.731 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.122 4.122 3 H 0.132 0.868 4 C -0.722 4.722 5 S 2.603 3.397 6 C -0.805 4.805 7 O -0.934 6.934 8 O -0.933 6.933 9 C 0.309 3.691 10 O -0.412 6.412 11 N -0.364 5.364 12 C 0.031 3.969 13 H 0.116 0.884 14 C -0.024 4.024 15 N -0.340 5.340 16 C -0.450 4.450 17 H 0.097 0.903 18 C -0.222 4.222 19 N -0.571 5.571 20 Si 0.910 3.090 21 H -0.229 1.229 22 H -0.215 1.215 23 H -0.227 1.227 24 C 0.014 3.986 25 C -0.132 4.132 26 H 0.100 0.900 27 C -0.195 4.195 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.236 0.764 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.281 -4.731 19.965 24.998 hybrid contribution -0.818 -0.592 -1.330 1.670 sum -15.099 -5.323 18.634 24.568 Atomic orbital electron populations 1.22293 0.91423 1.04499 1.05134 1.20998 0.98417 1.01008 0.91789 0.86803 1.30218 1.13158 1.14240 1.14550 1.07850 0.76116 0.77236 0.78539 1.30244 1.14169 1.16663 1.19418 1.93625 1.76189 1.37734 1.85849 1.93578 1.27391 1.86935 1.85444 1.20175 0.80032 0.84594 0.84325 1.90699 1.37497 1.26377 1.86635 1.45928 1.53183 1.31882 1.05359 1.22140 0.94236 0.97425 0.83063 0.88368 1.22351 0.94774 0.98898 0.86357 1.44759 1.16698 1.72735 0.99824 1.20162 0.91020 1.41005 0.92839 0.90262 1.25797 0.92097 0.97994 1.06320 1.70920 1.39576 1.34852 1.11729 0.83753 0.74428 0.75498 0.75350 1.22929 1.21547 1.22656 1.21608 0.85830 0.96707 0.94412 1.22652 0.95228 0.99816 0.95542 0.89955 1.21688 0.97604 0.98802 1.01398 0.88902 0.90786 0.90964 0.84183 0.83908 0.85123 0.85228 0.85209 0.76408 0.94786 0.93244 0.92874 0.93307 0.95546 0.92494 0.92882 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.73 37.16 0.32 -1.13 16 2 C -0.10 -1.00 2.72 -91.77 -0.25 -1.25 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.59 -4.66 4.61 37.16 0.17 -4.49 16 5 S 2.42 17.14 5.15 -107.50 -0.55 16.59 16 6 C -0.66 -2.55 10.62 101.05 1.07 -1.48 16 7 O -0.94 -10.44 18.10 -57.83 -1.05 -11.49 16 8 O -0.94 -8.91 15.46 -57.83 -0.89 -9.81 16 9 C 0.52 7.37 7.15 -10.99 -0.08 7.29 16 10 O -0.54 -9.43 15.56 5.56 0.09 -9.35 16 11 N -0.71 -9.83 5.00 -52.03 -0.26 -10.09 16 12 C 0.14 2.32 2.78 -66.09 -0.18 2.14 16 13 H 0.10 1.76 7.42 -51.93 -0.39 1.37 16 14 C 0.10 2.29 4.37 -3.06 -0.01 2.28 16 15 N -0.61 -15.07 3.33 -170.06 -0.57 -15.64 16 16 C -0.32 -9.36 10.56 -15.06 -0.16 -9.52 16 17 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 18 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 19 N -0.93 -29.69 13.70 55.49 0.76 -28.93 16 20 Si 1.07 28.38 24.53 -169.99 -4.17 24.21 16 21 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 22 H -0.29 -7.10 5.40 56.52 0.31 -6.79 16 23 H -0.30 -7.74 6.83 56.52 0.39 -7.35 16 24 C 0.14 2.73 6.70 -2.53 -0.02 2.71 16 25 C -0.11 -1.69 3.27 -88.47 -0.29 -1.98 16 26 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 27 C -0.14 -1.61 9.29 37.16 0.35 -1.26 16 28 H 0.09 0.77 5.40 -51.93 -0.28 0.49 16 29 H 0.07 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.09 7.96 -51.92 -0.41 0.67 16 33 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.40 4.30 7.98 -40.82 -0.33 3.98 16 37 H 0.03 0.86 3.88 -51.93 -0.20 0.65 16 38 H 0.05 1.17 6.59 -51.93 -0.34 0.82 16 39 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.51 8.04 -51.93 -0.42 0.09 16 42 H 0.06 0.69 8.11 -51.93 -0.42 0.26 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -40.00 357.48 -7.52 -47.51 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.09 Total: -0.94 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.83 Total: -7.46 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.07 Total: -54.66 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.85 Total: -30.64 kcal Atomic # 14 Polarization: 28.38 SS G_CDS: -4.17 Total: 24.21 kcal Atomic # 16 Polarization: 17.14 SS G_CDS: -0.55 Total: 16.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -40.00 -7.52 -47.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211378764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.629 kcal (2) G-P(sol) polarization free energy of solvation -39.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds