Wall clock time and date at job start Tue Mar 31 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47403 * 2 1 4 4 S 1.81401 * 109.47347 * 179.97438 * 3 2 1 5 5 O 1.42101 * 108.57416 * 65.51976 * 4 3 2 6 6 O 1.42095 * 108.57752 * 294.49464 * 4 3 2 7 7 C 1.81398 * 101.92025 * 180.02562 * 4 3 2 8 8 C 1.50702 * 109.46895 * 180.02562 * 7 4 3 9 9 O 1.21280 * 119.99990 * 0.02562 * 8 7 4 10 10 N 1.34777 * 120.00100 * 180.02562 * 8 7 4 11 11 C 1.47018 * 125.64981 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.40412 * 178.82520 * 11 10 8 13 13 H 1.09000 * 110.72188 * 96.24097 * 12 11 10 14 14 C 1.52995 * 110.72304 * 219.52316 * 12 11 10 15 15 C 1.55405 * 102.82616 * 337.97548 * 12 11 10 16 16 H 1.09000 * 110.89538 * 277.26533 * 15 12 11 17 17 N 1.46505 * 111.03913 * 153.47072 * 15 12 11 18 18 C 1.36935 * 120.00217 * 161.23025 * 17 15 12 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47272 * 59.99546 * 22 20 18 24 24 H 1.48501 * 109.47288 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46873 * 299.99485 * 22 20 18 26 26 C 1.47426 * 125.64500 * 359.95253 * 10 8 7 27 27 H 1.08994 * 109.47116 * 299.99678 * 1 2 3 28 28 H 1.09004 * 109.47084 * 59.99720 * 1 2 3 29 29 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46992 * 240.00613 * 2 1 3 31 31 H 1.08995 * 109.47381 * 120.00760 * 2 1 3 32 32 H 1.09007 * 109.46546 * 60.00340 * 3 2 1 33 33 H 1.08995 * 109.47473 * 300.00704 * 3 2 1 34 34 H 1.08996 * 109.47180 * 60.00338 * 7 4 3 35 35 H 1.09002 * 109.47226 * 300.00124 * 7 4 3 36 36 H 1.09002 * 109.88241 * 298.32048 * 11 10 8 37 37 H 1.09000 * 109.88049 * 59.33177 * 11 10 8 38 38 H 1.08999 * 109.47083 * 58.54334 * 14 12 11 39 39 H 1.09002 * 109.47293 * 178.54343 * 14 12 11 40 40 H 1.09000 * 109.47062 * 298.54438 * 14 12 11 41 41 H 0.96998 * 119.99743 * 341.23259 * 17 15 12 42 42 H 0.96989 * 120.00348 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.36956 * 323.01018 * 26 10 8 44 44 H 1.09001 * 110.36709 * 85.22211 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 8 4.3072 0.8841 -1.2249 6 8 4.3062 0.8842 1.2267 7 6 4.2288 3.2173 0.0015 8 6 5.7227 3.4153 0.0015 9 8 6.4618 2.4537 0.0006 10 7 6.2375 4.6609 0.0025 11 6 7.6688 4.9966 0.0032 12 6 7.7821 6.5354 -0.0259 13 1 7.9159 6.9314 0.9808 14 6 8.9272 6.9767 -0.9395 15 6 6.4094 6.9714 -0.6096 16 1 6.4129 6.9111 -1.6979 17 7 6.0517 8.3196 -0.1616 18 6 5.1038 9.0377 -0.8404 19 1 4.6200 8.6103 -1.7063 20 6 4.7653 10.3153 -0.4162 21 7 5.3551 10.8364 0.6387 22 14 3.4716 11.2946 -1.3418 23 1 2.1832 10.5565 -1.3210 24 1 3.2947 12.6186 -0.6930 25 1 3.9089 11.4875 -2.7478 26 6 5.4584 5.9125 0.0026 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.8008 3.6787 0.8914 35 1 3.8014 3.6793 -0.8886 36 1 8.1404 4.6071 0.9055 37 1 8.1494 4.5727 -0.8786 38 1 8.7560 6.5961 -1.9465 39 1 8.9725 8.0655 -0.9654 40 1 9.8691 6.5829 -0.5576 41 1 6.4865 8.7036 0.6159 42 1 5.1183 11.7290 0.9353 43 1 4.5654 5.8036 -0.6129 44 1 5.1849 6.1890 1.0209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216778558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:58 Heat of formation + Delta-G solvation = -99.000892 kcal Electronic energy + Delta-G solvation = -25115.265059 eV Core-core repulsion = 21388.237283 eV Total energy + Delta-G solvation = -3727.027775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05352 -37.81298 -37.06551 -36.11408 -35.20745 -34.23259 -32.81551 -30.96561 -30.44269 -28.08384 -27.66539 -26.05677 -24.11265 -22.41619 -21.69276 -20.09534 -19.57378 -18.86597 -17.57208 -17.29400 -16.74804 -16.50817 -16.28303 -15.96801 -15.35840 -15.01402 -14.80187 -14.20652 -13.92835 -13.68287 -13.27786 -13.24048 -13.09710 -12.97397 -12.93546 -12.83799 -12.52058 -12.12427 -12.06082 -12.00021 -11.85332 -11.78127 -11.31722 -11.28270 -11.21293 -11.07392 -10.82958 -10.71677 -10.65705 -10.37505 -10.20018 -10.04272 -9.84581 -9.13302 -8.56358 -7.20756 -5.95496 -3.27163 -0.30840 2.44690 2.56113 2.85179 3.31469 3.36895 3.38150 3.55740 3.80638 4.16289 4.25614 4.30727 4.44242 4.67330 4.71329 4.83908 4.95865 4.97994 5.01893 5.12130 5.14790 5.22619 5.42958 5.52477 5.54514 5.57175 5.62876 5.73889 5.75801 5.81045 5.90651 6.09268 6.12587 6.20424 6.32617 6.35626 6.51163 6.74624 7.48880 7.52447 7.95557 8.21706 9.33787 9.86518 10.21646 11.26140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.003341 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.916964 B = 8379.694895 C =10069.083778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.620 4.620 4 S 2.452 3.548 5 O -0.921 6.921 6 O -0.922 6.922 7 C -0.654 4.654 8 C 0.553 3.447 9 O -0.543 6.543 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.113 4.113 13 H 0.086 0.914 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.067 0.933 17 N -0.710 5.710 18 C -0.253 4.253 19 H 0.072 0.928 20 C -0.006 4.006 21 N -0.928 5.928 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.067 3.933 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.388 0.612 42 H 0.258 0.742 43 H 0.071 0.929 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -15.955 -0.827 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.749 4.749 4 S 2.630 3.370 5 O -0.919 6.919 6 O -0.919 6.919 7 C -0.781 4.781 8 C 0.339 3.661 9 O -0.422 6.422 10 N -0.333 5.333 11 C -0.009 4.009 12 C -0.133 4.133 13 H 0.105 0.895 14 C -0.192 4.192 15 C 0.064 3.936 16 H 0.085 0.915 17 N -0.349 5.349 18 C -0.384 4.384 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.059 4.059 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.222 0.778 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.929 -17.061 -0.930 17.783 hybrid contribution -1.415 1.762 -0.123 2.263 sum -6.344 -15.299 -1.053 16.596 Atomic orbital electron populations 1.21732 0.93851 1.02371 1.02460 1.21272 0.98421 0.91776 1.04069 1.30489 1.25969 1.06533 1.11897 1.07408 0.77384 0.76457 0.75793 1.93574 1.78631 1.73845 1.45805 1.93572 1.78657 1.73866 1.45789 1.30832 1.03339 1.30403 1.13574 1.18679 0.87329 0.82782 0.77296 1.90832 1.60723 1.39023 1.51664 1.48353 1.08814 1.05361 1.70753 1.22089 0.80894 0.95801 1.02130 1.22540 0.97108 0.92554 1.01093 0.89536 1.21660 0.96491 1.02404 0.98631 1.21424 0.89601 0.85524 0.97036 0.91492 1.42287 1.47097 1.10794 1.34769 1.19173 1.14035 0.96535 1.08614 0.91033 1.24773 1.00054 0.97438 0.98019 1.69640 1.44974 1.16913 1.25948 0.86260 0.81286 0.79420 0.79110 1.21168 1.21586 1.21088 1.23678 0.96736 0.83158 1.02334 0.92183 0.92185 0.91891 0.90060 0.90065 0.84733 0.84720 0.82320 0.82297 0.91426 0.91085 0.92739 0.91323 0.93022 0.77754 0.93173 0.91030 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.85 5.94 -26.73 -0.16 -1.01 16 3 C -0.62 -4.09 5.81 37.16 0.22 -3.88 16 4 S 2.45 27.93 3.96 -107.50 -0.43 27.51 16 5 O -0.92 -13.84 17.94 -59.54 -1.07 -14.91 16 6 O -0.92 -13.87 17.95 -59.51 -1.07 -14.93 16 7 C -0.65 -6.95 5.30 36.01 0.19 -6.76 16 8 C 0.55 8.74 7.87 -10.98 -0.09 8.65 16 9 O -0.54 -10.42 15.95 2.55 0.04 -10.38 16 10 N -0.60 -9.25 3.33 -170.50 -0.57 -9.81 16 11 C 0.11 1.66 6.46 -3.07 -0.02 1.64 16 12 C -0.11 -1.69 3.19 -88.65 -0.28 -1.97 16 13 H 0.09 1.32 8.00 -51.93 -0.42 0.90 16 14 C -0.13 -1.82 9.14 37.15 0.34 -1.48 16 15 C 0.18 3.10 3.14 -65.63 -0.21 2.89 16 16 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 17 N -0.71 -15.75 5.28 -51.20 -0.27 -16.02 16 18 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 19 H 0.07 1.73 7.83 -52.48 -0.41 1.31 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 22 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.07 1.04 6.39 -2.51 -0.02 1.03 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.16 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.16 1.20 7.85 -51.92 -0.41 0.80 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 38 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.39 9.24 7.72 -40.82 -0.31 8.93 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.07 1.03 7.48 -51.93 -0.39 0.64 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -35.38 375.82 -9.29 -44.66 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.39 Total: 5.84 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.10 Total: -8.08 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.11 Total: -51.14 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -2.10 Total: -40.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -0.43 Total: 27.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.38 -9.29 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216778558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.337 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds