Wall clock time and date at job start Tue Mar 31 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 S 1.81401 * 109.46870 * 179.97438 * 3 2 1 5 5 O 1.42101 * 108.58106 * 65.50462 * 4 3 2 6 6 O 1.42105 * 108.57333 * 294.48363 * 4 3 2 7 7 C 1.81396 * 101.92126 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.47138 * 179.97438 * 7 4 3 9 9 O 1.21283 * 119.99909 * 359.97438 * 8 7 4 10 10 N 1.34779 * 119.99711 * 180.02562 * 8 7 4 11 11 C 1.46504 * 119.99730 * 179.97438 * 10 8 7 12 12 C 1.53081 * 109.43848 * 84.79387 * 11 10 8 13 13 C 1.53190 * 109.29209 * 181.23616 * 12 11 10 14 14 N 1.46921 * 108.89311 * 305.57883 * 13 12 11 15 15 C 1.36940 * 120.63187 * 233.51481 * 14 13 12 16 16 H 1.08001 * 120.00319 * 152.61971 * 15 14 13 17 17 C 1.38813 * 119.99903 * 332.62203 * 15 14 13 18 18 N 1.31624 * 120.00070 * 159.34992 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 339.35529 * 17 15 14 20 20 H 1.48494 * 109.47321 * 92.87851 * 19 17 15 21 21 H 1.48501 * 109.47194 * 212.88430 * 19 17 15 22 22 H 1.48509 * 109.46983 * 332.87654 * 19 17 15 23 23 C 1.46923 * 118.74178 * 53.54201 * 14 13 12 24 24 C 1.53035 * 109.45960 * 204.99782 * 11 10 8 25 25 H 1.08998 * 109.47389 * 300.00965 * 1 2 3 26 26 H 1.09007 * 109.46634 * 60.00114 * 1 2 3 27 27 H 1.09000 * 109.47529 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47035 * 239.99373 * 2 1 3 29 29 H 1.09001 * 109.46327 * 119.99633 * 2 1 3 30 30 H 1.08993 * 109.47192 * 59.99633 * 3 2 1 31 31 H 1.08999 * 109.46750 * 299.99247 * 3 2 1 32 32 H 1.09006 * 109.47203 * 59.99984 * 7 4 3 33 33 H 1.09000 * 109.46836 * 299.99855 * 7 4 3 34 34 H 0.96998 * 120.00063 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.46073 * 324.97324 * 11 10 8 36 36 H 1.08992 * 109.38800 * 61.36034 * 12 11 10 37 37 H 1.09002 * 109.61927 * 301.25313 * 12 11 10 38 38 H 1.08999 * 109.58729 * 185.71870 * 13 12 11 39 39 H 1.09004 * 109.58886 * 65.43758 * 13 12 11 40 40 H 0.97001 * 119.99914 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.59094 * 66.17180 * 23 14 13 42 42 H 1.09001 * 109.59077 * 186.46452 * 23 14 13 43 43 H 1.09002 * 109.49848 * 58.67960 * 24 11 10 44 44 H 1.09002 * 109.52425 * 298.59433 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3073 0.8838 -1.2247 6 8 4.3061 0.8844 1.2269 7 6 4.2288 3.2173 -0.0001 8 6 5.7228 3.4153 0.0010 9 8 6.4619 2.4537 0.0028 10 7 6.2374 4.6609 0.0011 11 6 7.6898 4.8533 0.0028 12 6 8.2138 4.7898 -1.4341 13 6 9.7361 4.9606 -1.4257 14 7 10.0718 6.2003 -0.7123 15 6 10.8628 7.1512 -1.3001 16 1 10.7617 8.1883 -1.0164 17 6 11.7947 6.7819 -2.2604 18 7 12.2585 7.6777 -3.1060 19 14 12.3902 5.0138 -2.3529 20 1 11.5535 4.2597 -3.3205 21 1 13.8062 4.9911 -2.7998 22 1 12.2844 4.3851 -1.0117 23 6 9.5433 6.4003 0.6439 24 6 8.0227 6.2170 0.6124 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 3.8007 3.6795 0.8894 33 1 3.8015 3.6784 -0.8906 34 1 5.6463 5.4299 0.0001 35 1 8.1596 4.0670 0.5936 36 1 7.7612 5.5897 -2.0200 37 1 7.9581 3.8261 -1.8747 38 1 10.1030 5.0178 -2.4505 39 1 10.1963 4.1118 -0.9198 40 1 12.9094 7.4196 -3.7773 41 1 9.9856 5.6686 1.3201 42 1 9.7851 7.4067 0.9856 43 1 7.6290 6.2676 1.6276 44 1 7.5736 7.0055 0.0084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230288488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:04 Heat of formation + Delta-G solvation = -88.488946 kcal Electronic energy + Delta-G solvation = -25140.475222 eV Core-core repulsion = 21413.903279 eV Total energy + Delta-G solvation = -3726.571943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.07829 -37.76532 -37.19254 -36.23848 -35.34697 -34.74916 -32.44154 -31.18557 -30.45195 -29.56723 -28.18094 -24.99623 -22.91818 -22.63511 -22.02759 -20.67762 -19.77602 -19.08027 -17.72953 -17.20455 -16.81783 -16.64105 -16.30755 -15.82413 -15.65957 -15.00066 -14.90134 -14.22037 -14.06534 -13.91714 -13.79945 -13.51383 -13.07652 -13.06954 -12.99304 -12.81920 -12.40688 -12.23982 -12.17656 -11.99634 -11.97275 -11.84391 -11.43986 -11.36439 -11.15358 -10.87774 -10.80502 -10.65557 -10.39124 -10.18355 -10.05820 -9.82965 -9.51616 -8.98730 -8.63043 -7.01675 -5.96214 -3.32719 -0.45906 2.30658 2.41700 2.80361 3.35954 3.49721 3.51660 3.55302 3.64891 4.04665 4.13796 4.26233 4.50800 4.53687 4.58785 4.72503 4.82201 4.92538 4.99442 5.08072 5.10449 5.24446 5.37348 5.43597 5.45102 5.58777 5.63311 5.76852 5.96628 6.00296 6.08712 6.24107 6.36645 6.51866 6.55657 6.63103 6.65014 6.86809 7.28768 7.93378 7.95089 8.30734 8.91534 9.70497 10.07446 11.19406 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002688 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.878337 B =10412.385904 C =10789.828792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.620 4.620 4 S 2.450 3.550 5 O -0.917 6.917 6 O -0.919 6.919 7 C -0.662 4.662 8 C 0.537 3.463 9 O -0.528 6.528 10 N -0.710 5.710 11 C 0.146 3.854 12 C -0.143 4.143 13 C 0.128 3.872 14 N -0.606 5.606 15 C -0.262 4.262 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.151 3.849 24 C -0.140 4.140 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.293 -9.032 7.990 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.749 4.749 4 S 2.628 3.372 5 O -0.914 6.914 6 O -0.916 6.916 7 C -0.789 4.789 8 C 0.320 3.680 9 O -0.405 6.405 10 N -0.360 5.360 11 C 0.043 3.957 12 C -0.183 4.183 13 C 0.001 3.999 14 N -0.330 5.330 15 C -0.390 4.390 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.712 3.288 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.025 3.975 24 C -0.180 4.180 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.005 -10.318 7.868 28.172 hybrid contribution -0.631 0.392 -0.245 0.782 sum -25.636 -9.926 7.623 28.528 Atomic orbital electron populations 1.21732 0.93846 1.02477 1.02331 1.21280 0.98407 0.91745 1.04221 1.30496 1.26111 1.06610 1.11636 1.07503 0.77362 0.76470 0.75911 1.93598 1.78470 1.73605 1.45765 1.93588 1.78577 1.73664 1.45790 1.30896 1.03641 1.31131 1.13240 1.19096 0.87248 0.84591 0.77024 1.90882 1.60532 1.39502 1.49623 1.46151 1.09187 1.06870 1.73806 1.21166 0.77630 0.98836 0.98083 1.22426 0.99078 1.01455 0.95387 1.21330 0.91823 0.88946 0.97756 1.44405 1.57553 1.19196 1.11848 1.18894 1.12373 0.88797 1.18950 0.89639 1.25281 0.97493 0.97147 0.97580 1.69836 1.32922 1.34108 1.18163 0.86980 0.77247 0.86336 0.78287 1.21503 1.23074 1.19433 1.20866 0.89562 1.00049 0.87065 1.22341 1.00519 0.95413 0.99722 0.92256 0.92223 0.91810 0.89968 0.90003 0.84886 0.84832 0.82422 0.82341 0.76528 0.89410 0.91478 0.92034 0.90574 0.95306 0.92729 0.95592 0.91231 0.92007 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.12 -0.69 5.94 -26.73 -0.16 -0.85 16 3 C -0.62 -2.80 5.81 37.16 0.22 -2.59 16 4 S 2.45 23.53 3.96 -107.50 -0.43 23.10 16 5 O -0.92 -12.83 17.95 -59.51 -1.07 -13.90 16 6 O -0.92 -12.50 17.95 -59.54 -1.07 -13.57 16 7 C -0.66 -4.75 6.29 36.01 0.23 -4.52 16 8 C 0.54 7.18 7.81 -10.98 -0.09 7.10 16 9 O -0.53 -9.70 15.29 2.56 0.04 -9.66 16 10 N -0.71 -8.70 5.08 -53.74 -0.27 -8.97 16 11 C 0.15 2.32 2.41 -67.87 -0.16 2.15 16 12 C -0.14 -2.66 5.66 -26.59 -0.15 -2.81 16 13 C 0.13 2.86 4.20 -3.71 -0.02 2.85 16 14 N -0.61 -14.24 2.77 -172.32 -0.48 -14.72 16 15 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 16 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 19 Si 0.88 22.83 24.34 -169.99 -4.14 18.69 16 20 H -0.29 -7.26 6.62 56.52 0.37 -6.89 16 21 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 22 H -0.27 -6.90 6.64 56.52 0.38 -6.53 16 23 C 0.15 2.85 6.52 -3.71 -0.02 2.82 16 24 C -0.14 -2.08 5.55 -26.61 -0.15 -2.23 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.16 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.16 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 35 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.87 4.50 -51.93 -0.23 1.64 16 39 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -39.71 363.06 -8.63 -48.34 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.29 Total: -2.64 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.18 Total: -5.11 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.02 Total: -50.71 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.10 Total: -37.13 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Atomic # 16 Polarization: 23.53 SS G_CDS: -0.43 Total: 23.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.71 -8.63 -48.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230288488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.151 kcal (2) G-P(sol) polarization free energy of solvation -39.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds