Wall clock time and date at job start Tue Mar 31 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47551 * 2 1 4 4 C 1.50705 * 109.46707 * 120.00180 * 2 1 3 5 5 O 1.21280 * 119.99731 * 239.99572 * 4 2 1 6 6 N 1.34773 * 120.00446 * 59.99846 * 4 2 1 7 7 C 1.46498 * 120.00381 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47541 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47573 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.64235 * 304.73584 * 9 8 7 11 11 C 1.52708 * 109.62770 * 184.56388 * 9 8 7 12 12 N 1.46388 * 109.77072 * 182.00679 * 11 9 8 13 13 C 1.36931 * 119.69547 * 244.31119 * 12 11 9 14 14 H 1.08000 * 120.00262 * 331.36968 * 13 12 11 15 15 C 1.38813 * 119.99851 * 151.37044 * 13 12 11 16 16 N 1.31618 * 120.00318 * 340.81284 * 15 13 12 17 17 Si 1.86797 * 120.00202 * 160.54459 * 15 13 12 18 18 H 1.48506 * 109.47261 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47410 * 119.99543 * 17 15 13 20 20 H 1.48505 * 109.47191 * 240.00036 * 17 15 13 21 21 C 1.46383 * 120.60099 * 64.03412 * 12 11 9 22 22 C 1.53190 * 109.50944 * 295.95833 * 21 12 11 23 23 S 1.81661 * 109.55526 * 64.99933 * 9 8 7 24 24 O 1.42105 * 108.65263 * 61.06051 * 23 9 8 25 25 O 1.42102 * 108.65435 * 289.75417 * 23 9 8 26 26 H 1.09002 * 109.46427 * 60.00056 * 1 2 3 27 27 H 1.08992 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47007 * 300.00370 * 1 2 3 29 29 H 1.09003 * 109.47163 * 239.99471 * 2 1 3 30 30 H 1.09001 * 109.47458 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47417 * 299.99975 * 3 2 1 32 32 H 1.09003 * 109.47319 * 59.99566 * 3 2 1 33 33 H 0.96997 * 119.99989 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46704 * 59.99781 * 7 6 4 35 35 H 1.09001 * 109.46959 * 300.00169 * 7 6 4 36 36 H 1.09003 * 109.47115 * 60.00260 * 8 7 6 37 37 H 1.09001 * 109.47318 * 300.00177 * 8 7 6 38 38 H 1.08994 * 109.33747 * 61.90940 * 11 9 8 39 39 H 1.09000 * 109.32539 * 302.09455 * 11 9 8 40 40 H 0.96990 * 120.00465 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46615 * 55.97074 * 21 12 11 42 42 H 1.09004 * 109.46644 * 175.94660 * 21 12 11 43 43 H 1.08998 * 109.55450 * 178.10003 * 22 21 12 44 44 H 1.09001 * 109.55558 * 298.31096 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4438 7 6 2.1954 -2.6916 2.6397 8 6 1.6848 -4.1338 2.6402 9 6 2.1957 -4.8554 3.8888 10 1 3.2825 -4.7848 3.9339 11 6 1.7834 -6.3249 3.8367 12 7 2.2294 -7.0076 5.0524 13 6 3.1600 -8.0084 4.9659 14 1 3.2290 -8.6055 4.0686 15 6 4.0147 -8.2553 6.0314 16 7 4.2054 -7.3320 6.9499 17 14 4.8887 -9.9007 6.1659 18 1 4.5025 -10.7615 5.0190 19 1 6.3576 -9.6839 6.1499 20 1 4.5001 -10.5653 7.4358 21 6 1.6939 -6.6262 6.3603 22 6 2.1013 -5.1843 6.6792 23 16 1.4745 -4.0911 5.3706 24 8 0.0609 -4.2222 5.3075 25 8 2.0478 -2.8022 5.5420 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.1493 -2.4723 0.8052 34 1 1.8324 -2.1777 3.5299 35 1 3.2854 -2.6917 2.6393 36 1 2.0474 -4.6479 1.7500 37 1 0.5947 -4.1333 2.6408 38 1 2.2397 -6.7971 2.9668 39 1 0.6983 -6.3926 3.7593 40 1 4.8029 -7.5044 7.6942 41 1 0.6066 -6.7012 6.3436 42 1 2.0922 -7.2937 7.1246 43 1 1.6748 -4.8882 7.6376 44 1 3.1880 -5.1141 6.7261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230422167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:36 Heat of formation + Delta-G solvation = -98.718392 kcal Electronic energy + Delta-G solvation = -25865.011321 eV Core-core repulsion = 22137.995796 eV Total energy + Delta-G solvation = -3727.015525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91287 -37.30047 -36.43830 -35.80761 -35.29541 -34.61456 -33.21033 -31.56993 -29.91819 -27.91158 -27.22050 -24.64808 -23.89385 -22.58096 -21.83284 -20.67933 -19.89850 -18.27108 -17.33674 -17.10950 -16.58429 -16.09970 -15.62492 -15.46430 -15.11818 -14.85965 -14.40226 -14.16924 -13.97028 -13.71163 -13.59175 -13.27417 -12.94623 -12.52819 -12.46789 -12.25286 -12.18473 -12.02862 -11.68475 -11.53434 -11.46746 -11.40240 -11.38123 -11.28846 -11.18367 -11.05776 -10.93366 -10.78471 -10.29272 -10.16586 -9.78765 -9.73531 -9.32254 -9.02690 -8.73364 -7.14229 -6.10252 -3.57976 0.70413 2.64281 3.09863 3.22854 3.30819 3.32595 3.33908 4.13539 4.26834 4.48574 4.60257 4.64765 4.73739 4.77693 4.92000 5.07911 5.11159 5.17715 5.24599 5.35962 5.45035 5.47364 5.61384 5.67136 5.71585 5.73391 5.74145 5.89924 5.95808 6.03664 6.06713 6.12694 6.27835 6.34600 6.41267 6.47893 6.99661 7.18681 7.45967 7.57174 8.12590 8.22652 8.86286 9.47968 9.95439 10.97517 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.003297 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.771623 B = 8491.808774 C = 8886.749036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.510 3.490 5 O -0.534 6.534 6 N -0.728 5.728 7 C 0.090 3.910 8 C -0.112 4.112 9 C -0.578 4.578 10 H 0.139 0.861 11 C 0.162 3.838 12 N -0.595 5.595 13 C -0.269 4.269 14 H 0.075 0.925 15 C 0.009 3.991 16 N -0.896 5.896 17 Si 0.908 3.092 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.287 1.287 21 C 0.174 3.826 22 C -0.588 4.588 23 S 2.393 3.607 24 O -0.957 6.957 25 O -0.960 6.960 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.399 0.601 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.259 0.741 41 H 0.032 0.968 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 8.218 -11.900 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.191 4.191 4 C 0.296 3.704 5 O -0.410 6.410 6 N -0.380 5.380 7 C -0.033 4.033 8 C -0.152 4.152 9 C -0.692 4.692 10 H 0.157 0.843 11 C 0.034 3.966 12 N -0.315 5.315 13 C -0.398 4.398 14 H 0.093 0.907 15 C -0.191 4.191 16 N -0.539 5.539 17 Si 0.737 3.263 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.047 3.953 22 C -0.723 4.723 23 S 2.579 3.421 24 O -0.954 6.954 25 O -0.957 6.957 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.594 9.381 -11.087 15.950 hybrid contribution 1.053 -1.588 -0.096 1.908 sum -5.541 7.793 -11.183 14.714 Atomic orbital electron populations 1.21808 0.92909 1.02602 1.03005 1.21313 0.97605 0.98122 0.96572 1.21613 1.01846 0.93550 1.02061 1.20733 0.80273 0.81632 0.87758 1.90736 1.37468 1.65866 1.46886 1.45978 1.54081 1.12336 1.25627 1.21895 1.00721 0.91903 0.88806 1.21528 1.01670 0.93746 0.98212 1.30485 1.13336 1.10825 1.14534 0.84273 1.20781 0.97877 0.85456 0.92528 1.44266 1.47296 1.39506 1.00442 1.19279 1.10416 1.07220 1.02910 0.90741 1.25116 0.96887 0.98222 0.98847 1.69948 1.37936 1.31617 1.14398 0.86156 0.78912 0.83359 0.77883 1.20044 1.21552 1.21290 1.20489 0.94126 0.90718 0.90009 1.30456 1.14889 1.13143 1.13848 1.08587 0.76294 0.76993 0.80181 1.93496 1.27985 1.87586 1.86366 1.93531 1.79911 1.36863 1.85380 0.91403 0.92054 0.91884 0.88565 0.91936 0.92129 0.91842 0.76644 0.89570 0.90429 0.89150 0.89991 0.90255 0.93230 0.93063 0.94992 0.87071 0.86796 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.09 37.16 0.34 -0.71 16 2 C -0.11 -1.03 3.26 -91.77 -0.30 -1.33 16 3 C -0.13 -1.23 8.48 37.15 0.32 -0.91 16 4 C 0.51 6.87 7.15 -10.98 -0.08 6.79 16 5 O -0.53 -9.74 15.98 5.56 0.09 -9.65 16 6 N -0.73 -8.77 5.45 -60.30 -0.33 -9.10 16 7 C 0.09 1.35 5.32 -4.05 -0.02 1.33 16 8 C -0.11 -1.50 4.81 -26.74 -0.13 -1.62 16 9 C -0.58 -9.60 2.64 -26.88 -0.07 -9.67 16 10 H 0.14 2.38 8.14 -51.92 -0.42 1.95 16 11 C 0.16 2.90 5.52 -4.25 -0.02 2.88 16 12 N -0.59 -13.03 2.83 -173.49 -0.49 -13.52 16 13 C -0.27 -6.52 9.46 -15.06 -0.14 -6.66 16 14 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 15 C 0.01 0.23 4.81 -17.43 -0.08 0.14 16 16 N -0.90 -22.88 10.12 55.49 0.56 -22.32 16 17 Si 0.91 19.84 29.60 -169.99 -5.03 14.81 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.17 3.72 5.34 -4.01 -0.02 3.70 16 22 C -0.59 -11.58 6.36 37.26 0.24 -11.35 16 23 S 2.39 44.84 4.32 -107.50 -0.46 44.37 16 24 O -0.96 -19.35 18.02 -57.81 -1.04 -20.39 16 25 O -0.96 -20.14 15.83 -57.81 -0.92 -21.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.40 3.34 7.89 -40.82 -0.32 3.02 16 34 H 0.09 1.54 5.65 -51.93 -0.29 1.25 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.33 7.87 -51.93 -0.41 0.93 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.11 2.62 5.90 -51.93 -0.31 2.31 16 43 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 44 H 0.15 3.29 7.12 -51.93 -0.37 2.92 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -32.36 359.67 -9.31 -41.67 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.13 Total: 7.19 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 0.02 Total: -17.43 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.26 Total: -44.94 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.87 Total: -51.10 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 16 Polarization: 44.84 SS G_CDS: -0.46 Total: 44.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.36 -9.31 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230422167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.047 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds