Wall clock time and date at job start Tue Mar 31 2020 04:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 C 1.50707 * 109.46941 * 119.99880 * 2 1 3 5 5 O 1.21280 * 119.99911 * 239.99826 * 4 2 1 6 6 N 1.34778 * 119.99815 * 59.99878 * 4 2 1 7 7 C 1.46501 * 119.99927 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47204 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47052 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.55681 * 55.21372 * 9 8 7 11 11 C 1.53656 * 109.48942 * 175.62647 * 9 8 7 12 12 N 1.46393 * 109.24803 * 178.20063 * 11 9 8 13 13 C 1.36936 * 119.70135 * 115.72372 * 12 11 9 14 14 H 1.07997 * 120.00006 * 22.84859 * 13 12 11 15 15 C 1.38814 * 119.99688 * 202.84929 * 13 12 11 16 16 N 1.31623 * 119.99532 * 218.35658 * 15 13 12 17 17 Si 1.86791 * 120.00087 * 38.35405 * 15 13 12 18 18 H 1.48499 * 109.47462 * 269.99818 * 17 15 13 19 19 H 1.48495 * 109.47482 * 30.00285 * 17 15 13 20 20 H 1.48510 * 109.46874 * 150.00054 * 17 15 13 21 21 C 1.46393 * 120.59803 * 295.44309 * 12 11 9 22 22 C 1.53180 * 109.50846 * 64.55192 * 21 12 11 23 23 S 1.81668 * 108.95179 * 301.74146 * 22 21 12 24 24 O 1.42098 * 108.65475 * 169.91296 * 23 22 21 25 25 O 1.42101 * 108.64811 * 301.21753 * 23 22 21 26 26 H 1.08993 * 109.46605 * 60.00102 * 1 2 3 27 27 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.47421 * 239.99827 * 2 1 3 30 30 H 1.09004 * 109.47043 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47274 * 299.99488 * 3 2 1 32 32 H 1.09000 * 109.47075 * 60.00182 * 3 2 1 33 33 H 0.96997 * 120.00284 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.46581 * 60.00167 * 7 6 4 35 35 H 1.08996 * 109.47322 * 300.00539 * 7 6 4 36 36 H 1.09000 * 109.47075 * 59.99890 * 8 7 6 37 37 H 1.08996 * 109.47213 * 300.00350 * 8 7 6 38 38 H 1.09002 * 109.60149 * 58.26915 * 11 9 8 39 39 H 1.09002 * 109.59265 * 298.12763 * 11 9 8 40 40 H 0.97006 * 119.99959 * 354.89523 * 16 15 13 41 41 H 1.08997 * 109.46305 * 184.56145 * 21 12 11 42 42 H 1.08996 * 109.46542 * 304.54866 * 21 12 11 43 43 H 1.09005 * 109.56178 * 61.58285 * 22 21 12 44 44 H 1.09001 * 109.55863 * 181.89866 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6858 -4.1341 2.6395 9 6 2.1957 -4.8553 3.8888 10 1 1.9045 -4.2956 4.7776 11 6 1.5959 -6.2689 3.9454 12 7 2.1206 -6.9691 5.1192 13 6 1.2685 -7.3402 6.1249 14 1 0.2150 -7.4638 5.9219 15 6 1.7590 -7.5575 7.4051 16 7 1.2772 -8.5401 8.1364 17 14 3.1026 -6.4554 8.0901 18 1 4.4312 -7.0265 7.7527 19 1 2.9814 -5.0996 7.4967 20 1 2.9635 -6.3640 9.5658 21 6 3.5469 -7.2815 5.2247 22 6 4.3514 -5.9802 5.3001 23 16 4.0063 -4.9865 3.8189 24 8 4.5631 -3.6918 4.0002 25 8 4.3630 -5.7437 2.6705 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1493 -2.4723 0.8052 34 1 1.8324 -2.1777 3.5299 35 1 3.2854 -2.6916 2.6394 36 1 2.0491 -4.6477 1.7493 37 1 0.5959 -4.1344 2.6397 38 1 1.8675 -6.8177 3.0437 39 1 0.5103 -6.2027 4.0172 40 1 0.5295 -9.0655 7.8108 41 1 3.7240 -7.8707 6.1244 42 1 3.8595 -7.8515 4.3498 43 1 4.0600 -5.4220 6.1899 44 1 5.4157 -6.2112 5.3447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230422168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:38 Heat of formation + Delta-G solvation = -88.414330 kcal Electronic energy + Delta-G solvation = -25973.782334 eV Core-core repulsion = 22247.213626 eV Total energy + Delta-G solvation = -3726.568707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.99464 -37.58274 -36.68307 -36.03873 -35.53558 -34.68317 -33.29943 -32.16326 -30.20633 -28.09927 -27.30431 -24.63523 -23.83716 -22.80582 -21.99197 -20.69418 -19.97880 -18.49608 -17.82004 -17.29949 -16.89315 -16.55240 -16.08884 -15.61001 -15.31018 -14.97245 -14.64234 -14.29366 -14.18925 -13.99965 -13.61371 -13.47436 -12.99577 -12.76988 -12.62155 -12.58935 -12.44811 -12.27769 -12.17140 -11.82295 -11.72194 -11.54592 -11.46590 -11.42426 -11.32307 -11.19840 -11.15135 -10.64754 -10.18151 -9.87910 -9.82465 -9.69427 -9.54171 -9.12966 -8.56039 -7.60065 -6.62310 -3.53241 0.37147 2.56651 2.97707 3.01822 3.20033 3.26967 3.45208 3.86590 4.28844 4.33003 4.41451 4.47710 4.56534 4.63533 4.67425 4.85390 4.93760 5.05823 5.08129 5.14024 5.25641 5.29909 5.40276 5.42374 5.53652 5.55345 5.62549 5.68570 5.74166 5.83084 5.85351 5.99872 6.01151 6.16147 6.24034 6.30982 6.38063 6.46995 7.37303 7.71503 8.12729 8.14409 8.71409 9.30487 9.81314 10.76010 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.003558 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.017669 B = 7867.866809 C = 8151.627926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.511 3.489 5 O -0.534 6.534 6 N -0.728 5.728 7 C 0.089 3.911 8 C -0.111 4.111 9 C -0.585 4.585 10 H 0.140 0.860 11 C 0.163 3.837 12 N -0.600 5.600 13 C -0.379 4.379 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.883 5.883 17 Si 1.029 2.971 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.290 1.290 21 C 0.145 3.855 22 C -0.648 4.648 23 S 2.404 3.596 24 O -0.949 6.949 25 O -0.946 6.946 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.272 0.728 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.134 0.866 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 11.188 -15.107 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.191 4.191 4 C 0.297 3.703 5 O -0.409 6.409 6 N -0.381 5.381 7 C -0.034 4.034 8 C -0.150 4.150 9 C -0.699 4.699 10 H 0.158 0.842 11 C 0.035 3.965 12 N -0.320 5.320 13 C -0.507 4.507 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.519 5.519 17 Si 0.860 3.140 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.217 1.217 21 C 0.017 3.983 22 C -0.780 4.780 23 S 2.589 3.411 24 O -0.946 6.946 25 O -0.943 6.943 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.769 12.138 -13.810 18.402 hybrid contribution -1.700 -0.517 -0.749 1.928 sum -0.931 11.621 -14.559 18.651 Atomic orbital electron populations 1.21797 0.92893 1.02528 1.02977 1.21321 0.97581 0.98161 0.96607 1.21614 1.01931 0.93488 1.02046 1.20744 0.80164 0.81615 0.87794 1.90735 1.37297 1.65920 1.46980 1.45965 1.54146 1.12352 1.25595 1.21896 1.01174 0.91904 0.88447 1.21503 1.03699 0.93521 0.96279 1.30453 1.24972 1.08633 1.05843 0.84161 1.21001 0.99815 0.84597 0.91114 1.44554 1.03496 1.63828 1.20152 1.20080 0.93063 1.48548 0.88971 0.90596 1.25994 1.03495 0.97771 0.93137 1.70925 1.23432 1.12974 1.44549 0.84460 0.76283 0.76900 0.76365 1.20830 1.21144 1.21711 1.20787 0.82607 0.91127 1.03788 1.30927 1.10272 1.15667 1.21182 1.08506 0.78904 0.76019 0.77695 1.93557 1.76389 1.37880 1.86791 1.93519 1.81788 1.72496 1.46520 0.91381 0.92096 0.91974 0.88473 0.91875 0.92085 0.91891 0.76562 0.90362 0.89644 0.89774 0.88815 0.92557 0.89678 0.91745 0.88260 0.92195 0.84817 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.09 37.16 0.34 -0.59 16 2 C -0.12 -0.98 3.26 -91.77 -0.30 -1.27 16 3 C -0.13 -1.16 8.48 37.16 0.32 -0.85 16 4 C 0.51 6.51 7.15 -10.98 -0.08 6.43 16 5 O -0.53 -9.31 15.98 5.56 0.09 -9.22 16 6 N -0.73 -8.18 5.45 -60.29 -0.33 -8.50 16 7 C 0.09 1.24 5.33 -4.04 -0.02 1.22 16 8 C -0.11 -1.36 4.80 -26.73 -0.13 -1.49 16 9 C -0.58 -9.05 2.67 -26.39 -0.07 -9.12 16 10 H 0.14 2.17 8.14 -51.93 -0.42 1.75 16 11 C 0.16 2.80 5.59 -3.76 -0.02 2.78 16 12 N -0.60 -12.77 2.62 -172.90 -0.45 -13.23 16 13 C -0.38 -9.51 9.65 -15.06 -0.15 -9.66 16 14 H 0.08 2.01 7.99 -52.49 -0.42 1.59 16 15 C 0.00 0.06 4.78 -17.43 -0.08 -0.02 16 16 N -0.88 -25.01 13.70 55.49 0.76 -24.25 16 17 Si 1.03 23.66 23.66 -169.99 -4.02 19.63 16 18 H -0.28 -5.96 6.35 56.52 0.36 -5.60 16 19 H -0.28 -6.06 6.15 56.52 0.35 -5.71 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.14 2.89 5.22 -4.01 -0.02 2.87 16 22 C -0.65 -11.62 5.58 37.25 0.21 -11.41 16 23 S 2.40 41.78 4.32 -107.50 -0.46 41.32 16 24 O -0.95 -18.38 15.83 -57.81 -0.92 -19.30 16 25 O -0.95 -17.70 18.01 -57.81 -1.04 -18.74 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.40 3.04 7.89 -40.82 -0.32 2.72 16 34 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.09 1.42 5.65 -51.93 -0.29 1.13 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.40 7.83 -51.93 -0.41 1.00 16 40 H 0.27 7.59 8.73 -40.82 -0.36 7.24 16 41 H 0.10 2.14 4.85 -51.93 -0.25 1.88 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.13 2.51 4.01 -51.92 -0.21 2.30 16 44 H 0.13 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -33.28 351.06 -8.13 -41.40 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.03 Total: 6.71 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.01 Total: -21.11 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.02 Total: -45.98 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.87 Total: -47.27 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.02 Total: 19.63 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.46 Total: 41.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.28 -8.13 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230422168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.011 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds