Wall clock time and date at job start Tue Mar 31 2020 04:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 C 1.50707 * 109.46941 * 119.99880 * 2 1 3 5 5 O 1.21280 * 119.99911 * 239.99826 * 4 2 1 6 6 N 1.34778 * 119.99815 * 59.99878 * 4 2 1 7 7 C 1.46501 * 119.99927 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47204 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47052 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.55681 * 55.21372 * 9 8 7 11 11 C 1.53656 * 109.48942 * 175.62647 * 9 8 7 12 12 N 1.46393 * 109.24803 * 178.20063 * 11 9 8 13 13 C 1.36936 * 119.70135 * 115.72372 * 12 11 9 14 14 H 1.07997 * 120.00006 * 22.84859 * 13 12 11 15 15 C 1.38814 * 119.99688 * 202.84929 * 13 12 11 16 16 N 1.31623 * 119.99532 * 218.35658 * 15 13 12 17 17 Si 1.86791 * 120.00087 * 38.35405 * 15 13 12 18 18 H 1.48499 * 109.47462 * 269.99818 * 17 15 13 19 19 H 1.48495 * 109.47482 * 30.00285 * 17 15 13 20 20 H 1.48510 * 109.46874 * 150.00054 * 17 15 13 21 21 C 1.46393 * 120.59803 * 295.44309 * 12 11 9 22 22 C 1.53180 * 109.50846 * 64.55192 * 21 12 11 23 23 S 1.81668 * 108.95179 * 301.74146 * 22 21 12 24 24 O 1.42098 * 108.65475 * 169.91296 * 23 22 21 25 25 O 1.42101 * 108.64811 * 301.21753 * 23 22 21 26 26 H 1.08993 * 109.46605 * 60.00102 * 1 2 3 27 27 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.47421 * 239.99827 * 2 1 3 30 30 H 1.09004 * 109.47043 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47274 * 299.99488 * 3 2 1 32 32 H 1.09000 * 109.47075 * 60.00182 * 3 2 1 33 33 H 0.96997 * 120.00284 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.46581 * 60.00167 * 7 6 4 35 35 H 1.08996 * 109.47322 * 300.00539 * 7 6 4 36 36 H 1.09000 * 109.47075 * 59.99890 * 8 7 6 37 37 H 1.08996 * 109.47213 * 300.00350 * 8 7 6 38 38 H 1.09002 * 109.60149 * 58.26915 * 11 9 8 39 39 H 1.09002 * 109.59265 * 298.12763 * 11 9 8 40 40 H 0.97006 * 119.99959 * 354.89523 * 16 15 13 41 41 H 1.08997 * 109.46305 * 184.56145 * 21 12 11 42 42 H 1.08996 * 109.46542 * 304.54866 * 21 12 11 43 43 H 1.09005 * 109.56178 * 61.58285 * 22 21 12 44 44 H 1.09001 * 109.55863 * 181.89866 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6858 -4.1341 2.6395 9 6 2.1957 -4.8553 3.8888 10 1 1.9045 -4.2956 4.7776 11 6 1.5959 -6.2689 3.9454 12 7 2.1206 -6.9691 5.1192 13 6 1.2685 -7.3402 6.1249 14 1 0.2150 -7.4638 5.9219 15 6 1.7590 -7.5575 7.4051 16 7 1.2772 -8.5401 8.1364 17 14 3.1026 -6.4554 8.0901 18 1 4.4312 -7.0265 7.7527 19 1 2.9814 -5.0996 7.4967 20 1 2.9635 -6.3640 9.5658 21 6 3.5469 -7.2815 5.2247 22 6 4.3514 -5.9802 5.3001 23 16 4.0063 -4.9865 3.8189 24 8 4.5631 -3.6918 4.0002 25 8 4.3630 -5.7437 2.6705 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1493 -2.4723 0.8052 34 1 1.8324 -2.1777 3.5299 35 1 3.2854 -2.6916 2.6394 36 1 2.0491 -4.6477 1.7493 37 1 0.5959 -4.1344 2.6397 38 1 1.8675 -6.8177 3.0437 39 1 0.5103 -6.2027 4.0172 40 1 0.5295 -9.0655 7.8108 41 1 3.7240 -7.8707 6.1244 42 1 3.8595 -7.8515 4.3498 43 1 4.0600 -5.4220 6.1899 44 1 5.4157 -6.2112 5.3447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230422168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:38 Heat of formation + Delta-G solvation = -115.167220 kcal Electronic energy + Delta-G solvation = -25974.942426 eV Core-core repulsion = 22247.213626 eV Total energy + Delta-G solvation = -3727.728800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98068 -39.08962 -38.08482 -37.38119 -36.86321 -35.47825 -34.62360 -33.87789 -31.68291 -29.40950 -27.92691 -26.00945 -25.35239 -23.87049 -23.09235 -22.27044 -20.90450 -19.92641 -19.62447 -18.21294 -18.17721 -17.97793 -17.23467 -16.73694 -16.62351 -16.41440 -15.92529 -15.77401 -15.38791 -15.19174 -14.89904 -14.57505 -14.34554 -14.10778 -13.88393 -13.70436 -13.57528 -13.27677 -13.18008 -13.15843 -13.04147 -12.90013 -12.80877 -12.52359 -12.40529 -12.21583 -12.05080 -11.97525 -11.89353 -11.56890 -11.39833 -10.98193 -10.80785 -10.45240 -10.17301 -9.42518 -8.62373 -5.50530 -0.99907 1.36815 1.45293 1.59990 1.60519 1.63723 2.07627 2.43268 2.52638 2.84433 2.93016 3.18694 3.38555 3.58133 3.75841 3.76728 3.89424 3.91961 4.01113 4.06969 4.14871 4.27035 4.31824 4.47510 4.58052 4.70093 4.77271 4.78987 4.86089 4.88421 4.90685 4.93102 4.97264 5.04624 5.09235 5.28016 5.33852 5.38566 5.81286 6.17319 6.51883 6.78304 7.23927 7.48197 7.92228 8.74424 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.003558 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.017669 B = 7867.866809 C = 8151.627926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.502 3.498 5 O -0.590 6.590 6 N -0.714 5.714 7 C 0.088 3.912 8 C -0.105 4.105 9 C -0.569 4.569 10 H 0.142 0.858 11 C 0.161 3.839 12 N -0.616 5.616 13 C -0.360 4.360 14 H 0.054 0.946 15 C -0.046 4.046 16 N -0.927 5.927 17 Si 1.051 2.949 18 H -0.255 1.255 19 H -0.261 1.261 20 H -0.306 1.306 21 C 0.137 3.863 22 C -0.654 4.654 23 S 2.415 3.585 24 O -0.972 6.972 25 O -0.957 6.957 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.125 0.875 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.420 0.580 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 12.121 -17.992 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.290 3.710 5 O -0.470 6.470 6 N -0.367 5.367 7 C -0.037 4.037 8 C -0.144 4.144 9 C -0.685 4.685 10 H 0.160 0.840 11 C 0.034 3.966 12 N -0.337 5.337 13 C -0.489 4.489 14 H 0.071 0.929 15 C -0.246 4.246 16 N -0.566 5.566 17 Si 0.878 3.122 18 H -0.181 1.181 19 H -0.187 1.187 20 H -0.234 1.234 21 C 0.010 3.990 22 C -0.785 4.785 23 S 2.602 3.398 24 O -0.969 6.969 25 O -0.954 6.954 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.145 0.855 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.436 13.063 -16.765 21.257 hybrid contribution -1.639 -0.782 0.010 1.816 sum -1.203 12.280 -16.754 20.808 Atomic orbital electron populations 1.21815 0.90889 1.03735 1.03407 1.21398 0.99044 0.97369 0.95109 1.21639 1.00833 0.94139 1.02582 1.21648 0.79129 0.81765 0.88452 1.90711 1.39919 1.67182 1.49186 1.45826 1.53771 1.12029 1.25108 1.21724 0.99593 0.93121 0.89270 1.21570 1.05684 0.91973 0.95204 1.30456 1.22154 1.08095 1.07825 0.84007 1.21121 1.00305 0.85153 0.90032 1.44553 1.03754 1.65265 1.20133 1.19961 0.92603 1.46671 0.89691 0.92852 1.26822 1.05545 0.98239 0.93961 1.71037 1.24766 1.15080 1.45730 0.84213 0.76045 0.76882 0.75086 1.18096 1.18715 1.23367 1.20862 0.82239 0.92054 1.03812 1.31087 1.12061 1.14172 1.21224 1.07996 0.79684 0.75098 0.77067 1.93544 1.77584 1.38785 1.86955 1.93504 1.82558 1.72608 1.46740 0.89167 0.90529 0.93362 0.85764 0.93674 0.89166 0.93679 0.74133 0.91528 0.92516 0.87895 0.85438 0.90533 0.88825 0.93128 0.90182 0.90275 0.85485 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.09 71.98 0.65 -0.67 16 2 C -0.11 -1.55 3.26 -11.54 -0.04 -1.59 16 3 C -0.13 -2.16 8.48 71.98 0.61 -1.55 16 4 C 0.50 12.12 7.15 87.66 0.63 12.75 16 5 O -0.59 -20.85 15.98 -3.03 -0.05 -20.90 16 6 N -0.71 -14.25 5.45 -463.05 -2.52 -16.77 16 7 C 0.09 2.27 5.33 86.38 0.46 2.73 16 8 C -0.11 -2.20 4.80 30.59 0.15 -2.05 16 9 C -0.57 -15.97 2.67 30.82 0.08 -15.89 16 10 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 11 C 0.16 5.04 5.59 86.62 0.48 5.52 16 12 N -0.62 -25.15 2.62 -700.92 -1.83 -26.99 16 13 C -0.36 -18.05 9.65 84.03 0.81 -17.24 16 14 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 15 C -0.05 -2.44 4.78 84.86 0.41 -2.03 16 16 N -0.93 -54.13 13.70 21.65 0.30 -53.83 16 17 Si 1.05 47.28 23.66 68.60 1.62 48.90 16 18 H -0.26 -10.30 6.35 99.48 0.63 -9.67 16 19 H -0.26 -10.59 6.15 99.48 0.61 -9.98 16 20 H -0.31 -14.43 7.11 99.48 0.71 -13.73 16 21 C 0.14 5.21 5.22 86.46 0.45 5.67 16 22 C -0.65 -21.85 5.58 72.04 0.40 -21.45 16 23 S 2.42 78.32 4.32 -56.49 -0.24 78.08 16 24 O -0.97 -36.38 15.83 -127.39 -2.02 -38.39 16 25 O -0.96 -33.13 18.01 -127.39 -2.29 -35.43 16 26 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.08 0.48 7.56 -2.39 -0.02 0.47 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.87 8.10 -2.38 -0.02 0.85 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.42 4.73 7.89 -92.71 -0.73 4.00 16 34 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.06 1.83 5.65 -2.39 -0.01 1.82 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.09 2.80 7.83 -2.39 -0.02 2.78 16 40 H 0.26 15.11 8.73 -92.70 -0.81 14.30 16 41 H 0.08 3.35 4.85 -2.39 -0.01 3.34 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.13 4.46 4.01 -2.39 -0.01 4.45 16 44 H 0.16 4.35 8.14 -2.39 -0.02 4.33 16 Total: -1.00 -75.21 351.06 -1.88 -77.09 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.06 Total: 24.04 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 5.10 Total: -35.80 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.06 Total: -97.59 kcal Atomic # 8 Polarization: -90.36 SS G_CDS: -4.36 Total: -94.72 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.62 Total: 48.90 kcal Atomic # 16 Polarization: 78.32 SS G_CDS: -0.24 Total: 78.08 kcal Total: -75.21 -1.88 -77.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230422168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.080 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds