Wall clock time and date at job start Tue Mar 31 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 O 1.21621 * 119.99755 * 325.31406 * 3 2 1 5 5 N 1.34773 * 120.00111 * 145.31259 * 3 2 1 6 6 C 1.47777 * 134.41066 * 180.02562 * 5 3 2 7 7 C 1.52937 * 85.80852 * 156.05573 * 6 5 3 8 8 C 1.47768 * 134.40868 * 359.97297 * 5 3 2 9 9 C 1.54002 * 115.15435 * 266.50687 * 7 6 5 10 10 C 1.55478 * 100.78463 * 194.48739 * 9 7 6 11 11 C 1.54474 * 102.36907 * 33.10529 * 10 9 7 12 12 H 1.08992 * 109.90555 * 98.19631 * 11 10 9 13 13 C 1.50693 * 109.83255 * 219.13448 * 11 10 9 14 14 O 1.21284 * 120.00241 * 114.57583 * 13 11 10 15 15 N 1.34781 * 120.00201 * 294.57869 * 13 11 10 16 16 C 1.47579 * 134.49446 * 180.02562 * 15 13 11 17 17 C 1.53950 * 86.11621 * 204.65755 * 16 15 13 18 18 C 1.50698 * 113.74185 * 221.94108 * 17 16 15 19 19 H 1.08004 * 119.99782 * 358.07289 * 18 17 16 20 20 C 1.37878 * 120.00154 * 178.07233 * 18 17 16 21 21 N 1.31517 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47187 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47173 * 120.00104 * 22 20 18 25 25 H 1.48498 * 109.47243 * 240.00594 * 22 20 18 26 26 C 1.47925 * 134.49765 * 0.02608 * 15 13 11 27 27 O 1.42537 * 116.18915 * 141.02815 * 7 6 5 28 28 H 4.39219 * 13.43271 * 359.97438 * 4 2 1 29 29 H 1.09000 * 113.81690 * 41.83250 * 6 5 3 30 30 H 1.09003 * 113.92407 * 270.29537 * 6 5 3 31 31 H 1.09002 * 113.82063 * 89.71778 * 8 5 3 32 32 H 1.09008 * 113.82015 * 318.15955 * 8 5 3 33 33 H 1.09002 * 111.15257 * 312.36925 * 9 7 6 34 34 H 1.09005 * 111.15441 * 76.60860 * 9 7 6 35 35 H 1.09004 * 110.82829 * 274.89009 * 10 9 7 36 36 H 1.09000 * 110.82817 * 151.32295 * 10 9 7 37 37 H 1.09003 * 113.77049 * 90.35821 * 16 15 13 38 38 H 1.08999 * 113.87175 * 318.96854 * 16 15 13 39 39 H 1.09002 * 113.74276 * 90.74001 * 17 16 15 40 40 H 0.96999 * 119.99516 * 179.97438 * 21 20 18 41 41 H 1.09006 * 113.87423 * 41.08470 * 26 15 13 42 42 H 1.08997 * 113.77410 * 269.58641 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2144 -0.8652 0.5994 5 7 3.2794 0.9607 -0.6642 6 6 4.7106 1.2634 -0.8739 7 6 4.2548 1.9986 -2.1351 8 6 2.8818 2.1305 -1.4746 9 6 4.2810 1.1605 -3.4269 10 6 4.1469 2.2769 -4.5007 11 6 4.8964 3.4580 -3.8455 12 1 5.9127 3.5146 -4.2352 13 6 4.1678 4.7463 -4.1289 14 8 3.6618 5.3695 -3.2198 15 7 4.0783 5.2059 -5.3927 16 6 3.4626 6.3908 -6.0212 17 6 3.4026 5.5473 -7.3077 18 6 3.7827 6.3093 -8.5511 19 1 4.0325 7.3580 -8.4865 20 6 3.8117 5.6675 -9.7710 21 7 3.5071 4.3905 -9.8496 22 14 4.2822 6.6121 -11.3124 23 1 4.5771 8.0236 -10.9573 24 1 5.4862 5.9941 -11.9235 25 1 3.1579 6.5697 -12.2815 26 6 4.5578 4.7255 -6.7071 27 8 4.9300 3.2187 -2.4307 28 1 -1.0500 -0.0004 0.0008 29 1 5.3219 0.3835 -1.0740 30 1 5.1401 1.9167 -0.1144 31 1 2.7579 3.0457 -0.8955 32 1 2.0482 1.9358 -2.1496 33 1 5.2256 0.6266 -3.5303 34 1 3.4361 0.4729 -3.4668 35 1 3.0999 2.5284 -4.6698 36 1 4.6304 1.9796 -5.4313 37 1 4.1310 7.2492 -6.0895 38 1 2.4830 6.6457 -5.6169 39 1 2.4758 4.9848 -7.4208 40 1 3.5272 3.9392 -10.7080 41 1 4.4520 3.6499 -6.8490 42 1 5.5468 5.0960 -6.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268857716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:59 Heat of formation + Delta-G solvation = 26.679317 kcal Electronic energy + Delta-G solvation = -26312.698170 eV Core-core repulsion = 22455.676346 eV Total energy + Delta-G solvation = -3857.021824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37756 -39.72587 -38.81505 -37.27877 -36.34998 -33.50881 -32.82600 -32.37611 -30.50517 -29.11505 -27.00339 -26.75492 -25.20812 -24.93177 -23.14712 -22.44479 -20.55645 -19.92568 -18.60567 -18.34604 -17.38662 -17.11609 -16.73144 -16.42837 -16.22622 -16.08924 -15.38254 -14.86134 -14.66109 -14.42846 -14.09864 -13.69962 -13.45964 -13.35315 -13.06233 -12.76599 -12.30836 -12.11518 -12.04804 -11.71928 -11.67303 -11.48020 -11.33704 -11.29669 -11.20321 -11.06346 -11.00431 -10.82230 -10.63140 -10.48584 -10.13485 -9.55226 -9.32950 -9.11474 -8.87891 -8.65345 -7.94171 -6.26116 -4.31299 1.30478 1.91162 2.56476 2.95811 3.16970 3.18176 3.27325 3.30285 3.33503 3.68786 3.77399 4.03875 4.21347 4.27379 4.32986 4.72077 4.87765 4.90900 5.04303 5.06136 5.13124 5.19246 5.25206 5.31048 5.41576 5.50355 5.55022 5.58035 5.77913 5.89720 5.98423 6.11537 6.20094 6.31417 6.46425 6.52835 6.68264 6.82039 6.87908 7.19927 7.46785 7.69567 7.71898 8.08423 8.40267 8.66374 8.72433 9.36114 10.83518 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024023 B = 0.002632 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.282913 B =10635.027442 C =10835.544672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.227 4.227 3 C 0.656 3.344 4 O -0.525 6.525 5 N -0.632 5.632 6 C 0.126 3.874 7 C 0.071 3.929 8 C 0.094 3.906 9 C -0.126 4.126 10 C -0.141 4.141 11 C 0.070 3.930 12 H 0.107 0.893 13 C 0.513 3.487 14 O -0.550 6.550 15 N -0.638 5.638 16 C 0.105 3.895 17 C 0.035 3.965 18 C -0.519 4.519 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.887 5.887 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.102 3.898 27 O -0.327 6.327 28 H 0.235 0.765 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -7.822 11.917 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.230 4.230 3 C 0.446 3.554 4 O -0.402 6.402 5 N -0.368 5.368 6 C 0.004 3.996 7 C 0.030 3.970 8 C -0.029 4.029 9 C -0.163 4.163 10 C -0.178 4.178 11 C 0.009 3.991 12 H 0.125 0.875 13 C 0.301 3.699 14 O -0.429 6.429 15 N -0.374 5.374 16 C -0.017 4.017 17 C 0.015 3.985 18 C -0.557 4.557 19 H 0.082 0.918 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.020 4.020 27 O -0.243 6.243 28 H 0.251 0.749 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.796 -8.192 13.046 15.425 hybrid contribution 0.004 0.413 -1.041 1.120 sum -0.791 -7.779 12.005 14.327 Atomic orbital electron populations 1.25289 0.95862 0.95597 0.93995 1.21336 0.93194 1.03815 1.04647 1.14191 0.82707 0.80724 0.77801 1.90872 1.68911 1.37165 1.43286 1.49490 1.09388 1.26607 1.51322 1.23212 0.82650 0.98796 0.94956 1.23418 0.92502 0.85879 0.95240 1.23733 0.98455 0.88395 0.92276 1.22917 1.04221 0.97528 0.91682 1.23132 1.02416 0.92799 0.99500 1.22678 1.00573 0.93850 0.82021 0.87494 1.20401 0.80900 0.86880 0.81698 1.90646 1.48610 1.59824 1.43807 1.50543 1.54949 1.26633 1.05229 1.23490 0.96515 0.89469 0.92217 1.20489 0.94728 0.92582 0.90662 1.21014 1.47118 0.96476 0.91129 0.91808 1.25011 0.94490 0.94929 0.99114 1.69945 1.47564 1.09252 1.25600 0.86493 0.78208 0.80238 0.82849 1.19580 1.20897 1.20881 1.23847 1.01035 0.99977 0.77148 1.88402 1.74657 1.39274 1.21967 0.74889 0.88585 0.88135 0.87835 0.89243 0.89027 0.89204 0.89615 0.88237 0.90759 0.92079 0.91848 0.92686 0.91594 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 19.25 29.55 0.57 -0.13 16 2 C -0.23 -2.56 13.34 -38.84 -0.52 -3.08 16 3 C 0.66 8.75 7.88 -14.34 -0.11 8.63 16 4 O -0.52 -8.62 17.81 5.26 0.09 -8.53 16 5 N -0.63 -7.32 3.60 -186.56 -0.67 -7.99 16 6 C 0.13 1.29 8.39 -3.38 -0.03 1.26 16 7 C 0.07 0.79 1.47 -90.31 -0.13 0.66 16 8 C 0.09 1.05 8.05 -3.38 -0.03 1.02 16 9 C -0.13 -1.22 6.39 -24.89 -0.16 -1.38 16 10 C -0.14 -1.64 5.83 -24.64 -0.14 -1.78 16 11 C 0.07 0.98 3.74 -27.11 -0.10 0.88 16 12 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.51 9.38 7.26 -10.99 -0.08 9.30 16 14 O -0.55 -11.87 17.25 -14.06 -0.24 -12.11 16 15 N -0.64 -11.91 3.60 -178.10 -0.64 -12.55 16 16 C 0.10 2.05 8.39 -2.97 -0.02 2.03 16 17 C 0.03 0.75 3.60 -90.83 -0.33 0.42 16 18 C -0.52 -12.52 8.77 -34.44 -0.30 -12.82 16 19 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 20 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -22.76 13.29 55.43 0.74 -22.03 16 22 Si 0.89 19.29 29.54 -169.99 -5.02 14.27 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.10 1.93 7.98 -2.76 -0.02 1.91 16 27 O -0.33 -4.62 10.38 -54.85 -0.57 -5.19 16 28 H 0.23 0.73 7.80 -54.09 -0.42 0.31 16 29 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 0.92 8.11 -51.92 -0.42 0.50 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.09 1.10 7.84 -51.93 -0.41 0.70 16 36 H 0.10 1.07 7.53 -51.93 -0.39 0.68 16 37 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.07 1.19 7.02 -51.93 -0.36 0.82 16 42 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -31.31 368.22 -8.04 -39.35 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.77 Total: 0.72 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.51 Total: 8.50 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.58 Total: -42.57 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.72 Total: -25.82 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.31 -8.04 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.032 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds