Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46836 * 2 1 4 4 C 1.52995 * 109.47460 * 119.99873 * 2 1 3 5 5 C 1.53001 * 109.47646 * 184.99769 * 4 2 1 6 6 N 1.46493 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.34783 * 120.00012 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99653 * 355.03297 * 7 6 5 9 9 C 1.50695 * 120.00020 * 175.03665 * 7 6 5 10 10 S 1.81393 * 112.85040 * 304.53703 * 9 7 6 11 11 C 1.81401 * 101.92041 * 297.26970 * 10 9 7 12 12 O 1.42101 * 108.58131 * 51.75756 * 10 9 7 13 13 O 1.42099 * 108.57782 * 182.78405 * 10 9 7 14 14 C 1.53782 * 113.61140 * 173.22692 * 9 7 6 15 15 C 1.53774 * 87.08578 * 270.88459 * 14 9 7 16 16 C 1.53783 * 87.08134 * 334.56809 * 15 14 9 17 17 N 1.46502 * 109.46950 * 240.00121 * 2 1 3 18 18 C 1.36940 * 119.99830 * 84.99910 * 17 2 1 19 19 H 1.07994 * 120.00065 * 0.02562 * 18 17 2 20 20 C 1.38814 * 119.99678 * 179.97438 * 18 17 2 21 21 N 1.31617 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47005 * 90.00115 * 22 20 18 24 24 H 1.48501 * 109.46517 * 209.99963 * 22 20 18 25 25 H 1.48493 * 109.47244 * 329.99753 * 22 20 18 26 26 H 1.08995 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47259 * 300.00041 * 1 2 3 28 28 H 1.09003 * 109.47284 * 59.99531 * 1 2 3 29 29 H 1.08997 * 109.47474 * 305.00452 * 4 2 1 30 30 H 1.09004 * 109.47096 * 64.99673 * 4 2 1 31 31 H 1.08996 * 109.46727 * 300.00724 * 5 4 2 32 32 H 1.09004 * 109.46249 * 60.00075 * 5 4 2 33 33 H 0.97001 * 120.00572 * 359.97438 * 6 5 4 34 34 H 1.08994 * 109.47277 * 55.25088 * 11 10 9 35 35 H 1.09000 * 109.47155 * 175.25048 * 11 10 9 36 36 H 1.08999 * 109.46976 * 295.24665 * 11 10 9 37 37 H 1.09004 * 113.61452 * 25.43526 * 14 9 7 38 38 H 1.09007 * 113.61230 * 156.33549 * 14 9 7 39 39 H 1.08994 * 113.61741 * 220.02068 * 15 14 9 40 40 H 1.09001 * 113.61353 * 89.11220 * 15 14 9 41 41 H 1.08995 * 113.61738 * 270.88371 * 16 15 14 42 42 H 1.08999 * 113.61392 * 139.97514 * 16 15 14 43 43 H 0.97001 * 119.99779 * 264.99367 * 17 2 1 44 44 H 0.97000 * 119.99828 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3044 2.5094 7 6 5.3741 -1.3399 2.7751 8 8 6.1652 -0.8788 1.9797 9 6 5.8681 -1.9524 4.0603 10 16 5.1141 -1.2062 5.5317 11 6 5.6919 0.5097 5.4194 12 8 3.7021 -1.2197 5.3732 13 8 5.6884 -1.8026 6.6865 14 6 7.3997 -2.0649 4.1402 15 6 7.2545 -3.4444 3.4763 16 6 5.8337 -3.4899 4.0630 17 7 2.0183 -0.6906 -1.1962 18 6 2.1490 -0.0074 -2.3758 19 1 1.8926 1.0405 -2.4241 20 6 2.6122 -0.6617 -3.5091 21 7 2.9252 -1.9387 -3.4500 22 14 2.7912 0.2705 -5.1180 23 1 4.1535 0.8555 -5.2021 24 1 2.5813 -0.6609 -6.2555 25 1 1.7812 1.3575 -5.1754 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0727 0.4259 32 1 3.8531 0.4370 1.3573 33 1 3.4260 -1.7358 3.1105 34 1 5.4117 0.9248 4.4513 35 1 5.2348 1.0997 6.2137 36 1 6.7764 0.5356 5.5257 37 1 7.9239 -1.3359 3.5223 38 1 7.7816 -2.1093 5.1603 39 1 7.9220 -4.2003 3.8898 40 1 7.2762 -3.4091 2.3871 41 1 5.7874 -3.9238 5.0618 42 1 5.0937 -3.9112 3.3826 43 1 2.2490 -1.6318 -1.1526 44 1 3.2492 -2.3958 -4.2418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317410316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = -75.339653 kcal Electronic energy + Delta-G solvation = -25705.546485 eV Core-core repulsion = 21979.544738 eV Total energy + Delta-G solvation = -3726.001747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.70396 -38.07343 -37.20103 -36.54076 -36.38713 -34.47980 -32.28144 -30.07671 -29.56747 -28.34163 -26.93115 -26.14449 -23.91952 -22.92590 -21.50260 -20.20763 -19.88856 -19.01670 -18.09694 -17.21091 -16.73368 -16.54036 -16.12410 -15.83240 -15.36858 -15.03272 -14.69860 -14.12286 -13.89743 -13.59959 -13.53171 -13.50681 -13.13491 -12.95245 -12.82273 -12.72428 -12.53869 -12.46392 -12.37924 -12.02918 -11.54741 -11.44505 -11.30666 -11.10489 -10.96196 -10.92066 -10.75660 -10.66330 -10.46463 -10.27885 -10.04559 -9.80623 -9.63468 -8.99801 -8.88375 -6.94991 -5.75089 -3.03678 -0.47511 2.08457 2.54140 2.83693 3.16602 3.44548 3.45005 3.50138 3.51473 3.84906 3.93996 4.33863 4.42368 4.45857 4.60958 4.61746 4.92744 5.10561 5.26744 5.28183 5.33409 5.40298 5.49847 5.56549 5.58345 5.65644 5.69178 5.85904 5.96915 6.08228 6.16514 6.30850 6.37866 6.42995 6.60362 6.70262 6.87085 7.07350 7.44979 7.72055 8.07814 8.43338 9.54793 10.11558 10.46279 11.47581 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.003283 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.921880 B = 8526.451333 C = 9300.908678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.135 4.135 5 C 0.120 3.880 6 N -0.720 5.720 7 C 0.544 3.456 8 O -0.511 6.511 9 C -0.608 4.608 10 S 2.430 3.570 11 C -0.650 4.650 12 O -0.928 6.928 13 O -0.929 6.929 14 C -0.098 4.098 15 C -0.124 4.124 16 C -0.098 4.098 17 N -0.724 5.724 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.407 0.593 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -0.051 21.403 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.174 4.174 5 C -0.002 4.002 6 N -0.373 5.373 7 C 0.325 3.675 8 O -0.386 6.386 9 C -0.699 4.699 10 S 2.611 3.389 11 C -0.801 4.801 12 O -0.925 6.925 13 O -0.926 6.926 14 C -0.137 4.137 15 C -0.162 4.162 16 C -0.137 4.137 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.244 0.756 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.449 0.045 21.300 22.255 hybrid contribution 0.220 0.366 -1.273 1.343 sum 6.669 0.411 20.027 21.112 Atomic orbital electron populations 1.22417 0.99035 1.00908 0.99994 1.20156 0.91971 0.95526 0.85942 0.93272 1.22092 0.93548 1.02152 0.99602 1.21569 0.94917 0.96995 0.86683 1.46272 1.06553 1.56438 1.28062 1.18668 0.83136 0.79917 0.85767 1.90745 1.54652 1.46305 1.46886 1.31632 1.11874 1.10507 1.15905 1.07757 0.76088 0.78684 0.76382 1.30181 1.13645 1.23969 1.12278 1.93584 1.26700 1.86152 1.86055 1.93602 1.79921 1.75493 1.43599 1.22680 0.87305 1.00502 1.03167 1.22754 0.95302 0.96450 1.01709 1.22699 1.00680 0.86453 1.03855 1.42466 1.78111 1.10662 1.05370 1.19225 1.36473 0.93836 0.87371 0.91212 1.24716 1.02182 0.95933 0.98010 1.69654 1.50926 1.08660 1.28874 0.86224 0.77783 0.78600 0.83789 1.21757 1.21859 1.20818 0.93481 0.94478 0.92733 0.91411 0.91403 0.89257 0.91506 0.75643 0.84998 0.84862 0.84854 0.88023 0.87762 0.90079 0.88800 0.87657 0.88930 0.78289 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.50 16 2 C 0.17 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.14 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.12 1.94 5.57 -4.04 -0.02 1.92 16 6 N -0.72 -9.63 5.26 -60.30 -0.32 -9.95 16 7 C 0.54 7.23 6.09 -10.99 -0.07 7.16 16 8 O -0.51 -8.65 15.88 5.56 0.09 -8.56 16 9 C -0.61 -5.91 0.97 -90.96 -0.09 -5.99 16 10 S 2.43 21.97 4.86 -107.50 -0.52 21.45 16 11 C -0.65 -4.38 10.42 101.05 1.05 -3.33 16 12 O -0.93 -10.68 16.35 -57.83 -0.95 -11.62 16 13 O -0.93 -10.13 17.48 -57.83 -1.01 -11.14 16 14 C -0.10 -0.82 7.00 -25.92 -0.18 -1.00 16 15 C -0.12 -1.07 7.80 -25.92 -0.20 -1.27 16 16 C -0.10 -0.84 7.23 -25.91 -0.19 -1.03 16 17 N -0.72 -17.53 4.57 -53.43 -0.24 -17.77 16 18 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.41 4.76 7.00 -40.82 -0.29 4.47 16 34 H 0.13 0.94 7.86 -51.93 -0.41 0.53 16 35 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.10 0.92 7.37 -51.93 -0.38 0.53 16 38 H 0.10 0.63 7.76 -51.92 -0.40 0.23 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.11 0.72 7.94 -51.93 -0.41 0.31 16 42 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -34.97 373.31 -8.77 -43.74 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.23 Total: 10.40 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.16 Total: -55.06 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.87 Total: -31.33 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 21.97 SS G_CDS: -0.52 Total: 21.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.97 -8.77 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.601 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds