Wall clock time and date at job start Tue Mar 31 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47398 * 312.69355 * 3 2 1 5 5 C 1.46507 * 119.99724 * 273.10616 * 4 3 2 6 6 C 1.47196 * 109.46865 * 262.75596 * 5 4 3 7 7 C 5.45113 * 149.07904 * 266.94108 * 2 1 3 8 8 C 6.81368 * 153.30753 * 260.50866 * 2 1 3 9 9 C 1.34774 * 120.00185 * 93.10248 * 4 3 2 10 10 O 1.21341 * 120.00176 * 2.80846 * 9 4 3 11 11 C 1.49455 * 119.99742 * 182.80603 * 9 4 3 12 12 O 1.21349 * 120.00307 * 356.50168 * 11 9 4 13 13 N 1.34775 * 119.99602 * 176.49511 * 11 9 4 14 14 C 1.47023 * 125.64983 * 0.04052 * 13 11 9 15 15 C 1.54375 * 107.28919 * 181.05679 * 14 13 11 16 16 C 1.55164 * 102.91731 * 22.13998 * 15 14 13 17 17 O 1.42896 * 111.00306 * 82.64015 * 16 15 14 18 18 C 1.50704 * 111.00095 * 206.45392 * 16 15 14 19 19 H 1.08000 * 120.00011 * 350.79833 * 18 16 15 20 20 C 1.37877 * 119.99479 * 170.52740 * 18 16 15 21 21 N 1.31511 * 120.00537 * 356.48578 * 20 18 16 22 22 Si 1.86810 * 119.99599 * 176.48868 * 20 18 16 23 23 H 1.48490 * 109.46901 * 94.97107 * 22 20 18 24 24 H 1.48504 * 109.46675 * 214.97165 * 22 20 18 25 25 H 1.48501 * 109.47060 * 334.96644 * 22 20 18 26 26 C 1.47423 * 125.64624 * 180.02562 * 13 11 9 27 27 H 4.40641 * 5.51453 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.47273 * 192.68913 * 3 2 1 29 29 H 1.09001 * 109.47222 * 72.68954 * 3 2 1 30 30 H 1.09005 * 109.46845 * 22.75664 * 5 4 3 31 31 H 1.09000 * 109.47058 * 142.75515 * 5 4 3 32 32 H 1.08995 * 109.47181 * 277.96462 * 8 7 6 33 33 H 1.08991 * 109.47667 * 37.97027 * 8 7 6 34 34 H 1.09000 * 109.46960 * 157.97044 * 8 7 6 35 35 H 1.08997 * 109.88439 * 300.44124 * 14 13 11 36 36 H 1.08994 * 109.88128 * 61.60967 * 14 13 11 37 37 H 1.08994 * 110.70620 * 263.80080 * 15 14 13 38 38 H 1.08994 * 110.75550 * 140.50312 * 15 14 13 39 39 H 0.96701 * 113.99975 * 183.17757 * 17 16 15 40 40 H 0.96997 * 120.00276 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.37479 * 37.06268 * 26 13 11 42 42 H 1.09007 * 110.36504 * 274.74352 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9357 1.0152 5 6 3.3140 -0.4882 2.3987 6 6 4.7249 -0.1322 2.6203 7 6 5.8504 0.1495 2.7971 8 6 7.2615 0.5047 3.0188 9 6 3.4196 -2.2087 0.6764 10 8 3.3199 -2.5659 -0.4790 11 6 3.8582 -3.1804 1.7238 12 8 4.0192 -2.8081 2.8675 13 7 4.0748 -4.4701 1.3981 14 6 3.9193 -5.0530 0.0573 15 6 4.2481 -6.5571 0.1700 16 6 4.0223 -6.8495 1.6771 17 8 2.6389 -7.0778 1.9528 18 6 4.8606 -8.0162 2.1324 19 1 5.3907 -8.6158 1.4073 20 6 4.9552 -8.3145 3.4752 21 7 4.3707 -7.5408 4.3635 22 14 5.9138 -9.8180 4.0326 23 1 7.2996 -9.4184 4.3856 24 1 5.2523 -10.4140 5.2211 25 1 5.9510 -10.8165 2.9340 26 6 4.5072 -5.5299 2.3271 27 1 -1.0499 -0.0001 0.0004 28 1 3.0089 1.0034 0.2257 29 1 3.0095 -0.3050 -0.9811 30 1 2.6860 0.3836 2.5828 31 1 3.0304 -1.2906 3.0797 32 1 7.4960 0.4169 4.0796 33 1 7.9000 -0.1699 2.4486 34 1 7.4336 1.5304 2.6925 35 1 2.8932 -4.9233 -0.2866 36 1 4.6088 -4.5736 -0.6375 37 1 5.2846 -6.7470 -0.1085 38 1 3.5682 -7.1481 -0.4435 39 1 2.4422 -7.2168 2.8894 40 1 4.4376 -7.7505 5.3082 41 1 4.0400 -5.3934 3.3024 42 1 5.5931 -5.5309 2.4226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345971293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:01 Heat of formation + Delta-G solvation = 11.699563 kcal Electronic energy + Delta-G solvation = -26862.712019 eV Core-core repulsion = 23005.040624 eV Total energy + Delta-G solvation = -3857.671394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63199 -38.63795 -37.32156 -36.41508 -34.23497 -34.08977 -32.85652 -32.31519 -30.23685 -29.65260 -28.08897 -27.66786 -26.16056 -25.37153 -23.36169 -21.71321 -19.72152 -19.24150 -18.55228 -17.33338 -17.15098 -16.90318 -16.51677 -15.64703 -15.44085 -15.22801 -14.84288 -14.57616 -14.34745 -13.82959 -13.71465 -13.64268 -13.39201 -13.25276 -13.14126 -12.95139 -12.83749 -12.70368 -12.29019 -11.72697 -11.53004 -11.09195 -11.04257 -10.78014 -10.74502 -10.58098 -10.51191 -10.35128 -10.22925 -9.88434 -9.67185 -9.34641 -9.26187 -8.86496 -8.73953 -8.42871 -7.88301 -6.30775 -4.41529 1.73163 1.98271 2.67974 2.80514 2.86994 3.06660 3.18733 3.26894 3.30578 3.54730 3.87865 4.20246 4.24171 4.37420 4.55925 4.96219 5.05839 5.12008 5.34241 5.47407 5.50957 5.53589 5.64144 5.73437 5.77039 5.81222 5.82832 5.91786 6.05375 6.20008 6.30473 6.52839 6.73057 6.82626 6.86417 6.97804 7.21004 7.30713 7.43955 7.70328 7.72927 7.76871 7.98033 8.04839 8.44364 8.63469 9.23496 9.31697 10.75131 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.003845 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.614656 B = 7279.991318 C = 8397.181865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.208 4.208 3 C 0.222 3.778 4 N -0.588 5.588 5 C 0.212 3.788 6 C -0.187 4.187 7 C -0.180 4.180 8 C -0.038 4.038 9 C 0.516 3.484 10 O -0.509 6.509 11 C 0.508 3.492 12 O -0.525 6.525 13 N -0.573 5.573 14 C 0.110 3.890 15 C -0.120 4.120 16 C 0.247 3.753 17 O -0.581 6.581 18 C -0.538 4.538 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.097 3.903 27 H 0.219 0.781 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.378 0.622 40 H 0.270 0.730 41 H 0.095 0.905 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 15.542 -4.887 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.100 3.900 4 N -0.322 5.322 5 C 0.092 3.908 6 C -0.188 4.188 7 C -0.181 4.181 8 C -0.094 4.094 9 C 0.299 3.701 10 O -0.383 6.383 11 C 0.291 3.709 12 O -0.404 6.404 13 N -0.305 5.305 14 C -0.013 4.013 15 C -0.158 4.158 16 C 0.206 3.794 17 O -0.388 6.388 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.023 4.023 27 H 0.235 0.765 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.124 15.668 -5.369 16.601 hybrid contribution 0.395 -0.710 1.029 1.311 sum -0.729 14.958 -4.340 15.592 Atomic orbital electron populations 1.24967 0.95921 0.99564 0.99447 1.23466 0.94826 1.01237 1.01349 1.18350 0.83772 0.93832 0.94027 1.47791 1.64329 1.09667 1.10374 1.18960 0.86951 1.02370 0.82554 1.22461 0.94761 0.99507 1.02079 1.22344 0.94041 1.02383 0.99370 1.18827 0.86398 1.01469 1.02705 1.20593 0.77537 0.82807 0.89135 1.90720 1.50426 1.77211 1.19976 1.19414 0.80847 0.82593 0.88089 1.90641 1.52482 1.76743 1.20567 1.48707 1.61778 1.07071 1.12939 1.22158 1.01449 0.94444 0.83213 1.22710 1.01576 0.92884 0.98664 1.19658 0.80573 0.90323 0.88836 1.86152 1.26918 1.94364 1.31391 1.21463 1.30109 1.13513 0.92572 0.91368 1.25090 0.94859 0.96718 0.96580 1.69789 1.43715 1.37307 1.02150 0.86387 0.79709 0.82461 0.78372 1.20500 1.20923 1.19603 1.23464 0.99448 0.85451 0.93966 0.76456 0.87807 0.87025 0.88759 0.84288 0.90158 0.90247 0.90629 0.91355 0.91691 0.90300 0.90550 0.77315 0.92011 0.88712 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.21 -2.50 13.68 -37.12 -0.51 -3.01 16 3 C 0.22 2.56 5.90 -6.83 -0.04 2.52 16 4 N -0.59 -8.56 2.42 -180.88 -0.44 -9.00 16 5 C 0.21 2.92 5.55 -6.83 -0.04 2.88 16 6 C -0.19 -2.81 12.50 -37.13 -0.46 -3.27 16 7 C -0.18 -2.57 14.13 -37.13 -0.52 -3.09 16 8 C -0.04 -0.38 10.32 34.37 0.35 -0.03 16 9 C 0.52 9.24 7.62 -11.58 -0.09 9.15 16 10 O -0.51 -9.61 13.65 5.50 0.08 -9.53 16 11 C 0.51 10.42 7.78 -11.58 -0.09 10.33 16 12 O -0.53 -11.30 12.59 5.50 0.07 -11.23 16 13 N -0.57 -12.32 3.33 -171.01 -0.57 -12.89 16 14 C 0.11 2.17 5.49 -3.04 -0.02 2.15 16 15 C -0.12 -2.47 6.14 -24.87 -0.15 -2.62 16 16 C 0.25 5.93 0.88 -89.63 -0.08 5.85 16 17 O -0.58 -14.55 13.17 -35.23 -0.46 -15.02 16 18 C -0.54 -13.80 8.28 -34.44 -0.29 -14.09 16 19 H 0.07 1.72 7.80 -52.49 -0.41 1.31 16 20 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 21 N -0.89 -23.25 10.67 55.43 0.59 -22.66 16 22 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.10 2.32 5.21 -2.54 -0.01 2.30 16 27 H 0.22 1.54 7.80 -54.10 -0.42 1.12 16 28 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.11 1.31 7.29 -51.93 -0.38 0.93 16 30 H 0.09 0.98 8.02 -51.93 -0.42 0.56 16 31 H 0.14 2.20 5.43 -51.93 -0.28 1.92 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.36 7.66 -51.93 -0.40 0.96 16 36 H 0.06 1.19 7.62 -51.93 -0.40 0.80 16 37 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.38 9.57 7.90 45.56 0.36 9.93 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.09 2.49 7.14 -51.93 -0.37 2.12 16 42 H 0.07 1.65 8.03 -51.92 -0.42 1.24 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -30.34 366.38 -6.50 -36.83 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.79 Total: 13.54 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.47 Total: 9.43 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.41 Total: -44.55 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.32 Total: -35.78 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.34 -6.50 -36.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345971293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.533 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds