Wall clock time and date at job start Tue Mar 31 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46934 * 257.17594 * 3 2 1 5 5 C 1.46499 * 120.00379 * 273.79484 * 4 3 2 6 6 C 1.47196 * 109.47130 * 263.51834 * 5 4 3 7 7 C 5.43546 * 148.75032 * 210.50795 * 2 1 3 8 8 C 6.79596 * 152.89506 * 203.70952 * 2 1 3 9 9 C 1.34780 * 119.99587 * 93.79259 * 4 3 2 10 10 O 1.21351 * 119.99978 * 4.20037 * 9 4 3 11 11 C 1.49448 * 119.99824 * 184.19248 * 9 4 3 12 12 O 1.21357 * 119.99906 * 354.39267 * 11 9 4 13 13 N 1.34773 * 120.00277 * 174.38665 * 11 9 4 14 14 C 1.47028 * 125.64311 * 0.02921 * 13 11 9 15 15 C 1.54330 * 107.39981 * 178.82717 * 14 13 11 16 16 C 1.55403 * 102.82665 * 337.97696 * 15 14 13 17 17 O 1.42904 * 110.89022 * 277.26755 * 16 15 14 18 18 C 1.50696 * 111.07171 * 153.48804 * 16 15 14 19 19 H 1.07998 * 120.00124 * 276.44176 * 18 16 15 20 20 C 1.37879 * 120.00003 * 96.44237 * 18 16 15 21 21 N 1.31516 * 119.99956 * 165.67305 * 20 18 16 22 22 Si 1.86797 * 120.00302 * 345.67003 * 20 18 16 23 23 H 1.48496 * 109.47083 * 84.94366 * 22 20 18 24 24 H 1.48492 * 109.47727 * 204.95050 * 22 20 18 25 25 H 1.48503 * 109.47023 * 324.94987 * 22 20 18 26 26 C 1.47419 * 125.65219 * 179.97438 * 13 11 9 27 27 H 4.40643 * 5.51398 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46809 * 137.18368 * 3 2 1 29 29 H 1.08997 * 109.47087 * 17.18245 * 3 2 1 30 30 H 1.09005 * 109.46721 * 23.51791 * 5 4 3 31 31 H 1.08994 * 109.47409 * 143.51262 * 5 4 3 32 32 H 1.08997 * 109.47348 * 226.29193 * 8 7 6 33 33 H 1.08999 * 109.46997 * 346.29227 * 8 7 6 34 34 H 1.09000 * 109.46892 * 106.29554 * 8 7 6 35 35 H 1.08993 * 109.88347 * 298.31661 * 14 13 11 36 36 H 1.08993 * 109.88225 * 59.33408 * 14 13 11 37 37 H 1.09002 * 110.72065 * 96.24528 * 15 14 13 38 38 H 1.08997 * 110.71846 * 219.52543 * 15 14 13 39 39 H 0.96705 * 113.99998 * 168.24933 * 17 16 15 40 40 H 0.96997 * 119.99811 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36930 * 323.00537 * 26 13 11 42 42 H 1.09006 * 110.36341 * 85.21715 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.3075 1.3468 5 6 3.2986 1.7014 1.7666 6 6 4.7010 2.1078 1.5802 7 6 5.8209 2.4294 1.4315 8 6 7.2236 2.8350 1.2451 9 6 3.4321 -0.6928 2.1997 10 8 3.3690 -1.8462 1.8278 11 6 3.8401 -0.3814 3.6032 12 8 4.0021 0.7713 3.9464 13 7 4.0282 -1.3806 4.4878 14 6 3.8678 -2.8149 4.2071 15 6 4.2144 -3.5801 5.5018 16 6 5.0949 -2.5623 6.2789 17 8 6.4495 -2.6106 5.8262 18 6 5.0161 -2.8013 7.7647 19 1 4.2000 -2.3845 8.3361 20 6 5.9860 -3.5520 8.3946 21 7 6.0849 -3.5317 9.7059 22 14 7.1596 -4.5980 7.3856 23 1 8.3006 -3.7634 6.9312 24 1 7.6662 -5.7177 8.2190 25 1 6.4447 -5.1444 6.2042 26 6 4.4298 -1.2166 5.8968 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.7547 -0.6985 29 1 3.0098 -0.9809 -0.3036 30 1 2.6520 2.3405 1.1652 31 1 3.0289 1.7984 2.8182 32 1 7.4629 3.6434 1.9359 33 1 7.8768 1.9846 1.4406 34 1 7.3697 3.1775 0.2206 35 1 2.8378 -3.0231 3.9180 36 1 4.5450 -3.1140 3.4072 37 1 3.3108 -3.8158 6.0641 38 1 4.7765 -4.4861 5.2755 39 1 6.9973 -1.8806 6.1459 40 1 6.7670 -4.0602 10.1490 41 1 5.1439 -0.3990 5.9950 42 1 3.5555 -1.0329 6.5214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345971294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:03 Heat of formation + Delta-G solvation = 18.350247 kcal Electronic energy + Delta-G solvation = -26809.201102 eV Core-core repulsion = 22951.818103 eV Total energy + Delta-G solvation = -3857.382999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86064 -38.96097 -37.65213 -36.64255 -34.73611 -34.20063 -32.98374 -32.40008 -30.49798 -29.77388 -28.54377 -27.96935 -26.31891 -25.51651 -23.32731 -21.92748 -19.89980 -19.53086 -18.67532 -17.65286 -17.47038 -17.05378 -16.66328 -15.97310 -15.70473 -15.26774 -15.06640 -14.72852 -14.64864 -13.98341 -13.93830 -13.74199 -13.59404 -13.49647 -13.37131 -13.20265 -12.89985 -12.69916 -12.59190 -12.05504 -11.76080 -11.61606 -11.15964 -11.00780 -10.91869 -10.46763 -10.45933 -10.35901 -10.25951 -9.99509 -9.79534 -9.44449 -9.37627 -9.07841 -8.79589 -8.44672 -8.23591 -6.24847 -4.33272 1.50677 1.82556 2.56376 2.67803 2.74259 2.85402 3.29831 3.45534 3.51012 3.64845 3.67996 4.08103 4.22920 4.33469 4.47717 4.93296 4.95601 5.00138 5.14249 5.23956 5.35140 5.42381 5.44804 5.54775 5.60568 5.67352 5.70270 5.73703 5.80306 5.97066 6.05277 6.12678 6.34800 6.44522 6.62640 6.74910 6.81236 7.00828 7.32063 7.39996 7.51050 7.64053 7.74006 8.08636 8.14475 8.57915 8.78135 9.38841 10.83855 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.003776 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.378809 B = 7413.277276 C = 8359.682402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.208 4.208 3 C 0.221 3.779 4 N -0.587 5.587 5 C 0.212 3.788 6 C -0.193 4.193 7 C -0.175 4.175 8 C -0.040 4.040 9 C 0.516 3.484 10 O -0.505 6.505 11 C 0.513 3.487 12 O -0.525 6.525 13 N -0.574 5.574 14 C 0.106 3.894 15 C -0.126 4.126 16 C 0.221 3.779 17 O -0.559 6.559 18 C -0.557 4.557 19 H 0.082 0.918 20 C 0.079 3.921 21 N -0.882 5.882 22 Si 0.947 3.053 23 H -0.289 1.289 24 H -0.324 1.324 25 H -0.273 1.273 26 C 0.087 3.913 27 H 0.219 0.781 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.373 0.627 40 H 0.267 0.733 41 H 0.076 0.924 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 9.835 -18.830 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.210 4.210 3 C 0.100 3.900 4 N -0.321 5.321 5 C 0.091 3.909 6 C -0.194 4.194 7 C -0.177 4.177 8 C -0.096 4.096 9 C 0.299 3.701 10 O -0.379 6.379 11 C 0.295 3.705 12 O -0.404 6.404 13 N -0.305 5.305 14 C -0.017 4.017 15 C -0.164 4.164 16 C 0.181 3.819 17 O -0.366 6.366 18 C -0.594 4.594 19 H 0.100 0.900 20 C -0.127 4.127 21 N -0.516 5.516 22 Si 0.782 3.218 23 H -0.216 1.216 24 H -0.255 1.255 25 H -0.199 1.199 26 C -0.034 4.034 27 H 0.236 0.764 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.221 0.779 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.421 9.252 -19.007 21.823 hybrid contribution 0.549 0.002 -0.185 0.579 sum -4.873 9.254 -19.192 21.857 Atomic orbital electron populations 1.24984 0.95923 1.00811 0.98060 1.23451 0.94790 1.00704 1.02010 1.18363 0.83768 1.04416 0.83474 1.47779 1.64184 1.06621 1.13489 1.18974 0.87198 0.79869 1.04862 1.22477 0.94854 1.01782 1.00273 1.22418 0.94092 0.98808 1.02348 1.18855 0.86525 1.01821 1.02353 1.20415 0.77638 0.85121 0.86885 1.90750 1.50010 1.19505 1.77611 1.19475 0.80411 0.85083 0.85497 1.90639 1.51901 1.18855 1.79037 1.48474 1.62994 1.07200 1.11868 1.22287 1.01189 0.78897 0.99291 1.23110 1.00528 0.99123 0.93670 1.20286 0.78856 0.88983 0.93802 1.86098 1.22864 1.51427 1.76250 1.21035 1.12695 1.36230 0.89411 0.90017 1.25075 0.97030 0.95669 0.94963 1.70007 1.33788 1.38813 1.08965 0.85748 0.80194 0.77876 0.78030 1.21645 1.25529 1.19851 1.23358 1.00414 1.01441 0.78197 0.76413 0.87717 0.86874 0.88676 0.84278 0.90091 0.90129 0.90513 0.91613 0.90835 0.89563 0.89947 0.77897 0.92319 0.90598 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.21 -2.24 13.68 -37.12 -0.51 -2.74 16 3 C 0.22 2.29 5.93 -6.82 -0.04 2.25 16 4 N -0.59 -7.63 2.41 -180.88 -0.44 -8.07 16 5 C 0.21 2.55 5.54 -6.83 -0.04 2.51 16 6 C -0.19 -2.62 12.64 -37.12 -0.47 -3.09 16 7 C -0.18 -2.29 14.13 -37.11 -0.52 -2.81 16 8 C -0.04 -0.36 10.32 34.37 0.35 -0.01 16 9 C 0.52 8.32 7.62 -11.58 -0.09 8.23 16 10 O -0.51 -8.82 13.65 5.50 0.08 -8.74 16 11 C 0.51 9.16 7.80 -11.59 -0.09 9.07 16 12 O -0.53 -9.71 12.66 5.49 0.07 -9.64 16 13 N -0.57 -10.70 3.33 -171.03 -0.57 -11.27 16 14 C 0.11 1.91 5.50 -3.06 -0.02 1.89 16 15 C -0.13 -2.50 5.93 -24.76 -0.15 -2.65 16 16 C 0.22 4.83 0.70 -89.50 -0.06 4.77 16 17 O -0.56 -12.16 8.73 -35.23 -0.31 -12.47 16 18 C -0.56 -14.42 8.85 -34.44 -0.30 -14.72 16 19 H 0.08 2.28 8.02 -52.49 -0.42 1.86 16 20 C 0.08 2.14 5.44 -17.82 -0.10 2.04 16 21 N -0.88 -25.62 13.96 55.43 0.77 -24.85 16 22 Si 0.95 23.09 24.97 -169.99 -4.24 18.84 16 23 H -0.29 -6.93 7.03 56.52 0.40 -6.53 16 24 H -0.32 -8.10 7.11 56.52 0.40 -7.69 16 25 H -0.27 -6.55 5.73 56.52 0.32 -6.23 16 26 C 0.09 1.73 6.07 -2.54 -0.02 1.71 16 27 H 0.22 1.26 7.80 -54.09 -0.42 0.84 16 28 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.11 1.22 7.26 -51.93 -0.38 0.84 16 30 H 0.10 0.85 8.02 -51.93 -0.42 0.43 16 31 H 0.14 1.89 5.34 -51.94 -0.28 1.62 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 36 H 0.07 1.37 7.45 -51.93 -0.39 0.98 16 37 H 0.09 1.65 8.04 -51.93 -0.42 1.23 16 38 H 0.08 1.69 6.71 -51.93 -0.35 1.34 16 39 H 0.37 7.25 9.02 45.56 0.41 7.66 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 42 H 0.08 1.58 8.00 -51.93 -0.42 1.17 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -32.63 361.30 -5.47 -38.10 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.80 Total: 7.32 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.48 Total: 5.34 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.23 Total: -44.19 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.16 Total: -30.85 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.24 Total: 18.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.63 -5.47 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345971294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.451 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds