Wall clock time and date at job start Tue Mar 31 2020 04:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46934 * 257.17594 * 3 2 1 5 5 C 1.46499 * 120.00379 * 273.79484 * 4 3 2 6 6 C 1.47196 * 109.47130 * 263.51834 * 5 4 3 7 7 C 5.43546 * 148.75032 * 210.50795 * 2 1 3 8 8 C 6.79596 * 152.89506 * 203.70952 * 2 1 3 9 9 C 1.34780 * 119.99587 * 93.79259 * 4 3 2 10 10 O 1.21351 * 119.99978 * 4.20037 * 9 4 3 11 11 C 1.49448 * 119.99824 * 184.19248 * 9 4 3 12 12 O 1.21357 * 119.99906 * 354.39267 * 11 9 4 13 13 N 1.34773 * 120.00277 * 174.38665 * 11 9 4 14 14 C 1.47028 * 125.64311 * 0.02921 * 13 11 9 15 15 C 1.54330 * 107.39981 * 178.82717 * 14 13 11 16 16 C 1.55403 * 102.82665 * 337.97696 * 15 14 13 17 17 O 1.42904 * 110.89022 * 277.26755 * 16 15 14 18 18 C 1.50696 * 111.07171 * 153.48804 * 16 15 14 19 19 H 1.07998 * 120.00124 * 276.44176 * 18 16 15 20 20 C 1.37879 * 120.00003 * 96.44237 * 18 16 15 21 21 N 1.31516 * 119.99956 * 165.67305 * 20 18 16 22 22 Si 1.86797 * 120.00302 * 345.67003 * 20 18 16 23 23 H 1.48496 * 109.47083 * 84.94366 * 22 20 18 24 24 H 1.48492 * 109.47727 * 204.95050 * 22 20 18 25 25 H 1.48503 * 109.47023 * 324.94987 * 22 20 18 26 26 C 1.47419 * 125.65219 * 179.97438 * 13 11 9 27 27 H 4.40643 * 5.51398 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46809 * 137.18368 * 3 2 1 29 29 H 1.08997 * 109.47087 * 17.18245 * 3 2 1 30 30 H 1.09005 * 109.46721 * 23.51791 * 5 4 3 31 31 H 1.08994 * 109.47409 * 143.51262 * 5 4 3 32 32 H 1.08997 * 109.47348 * 226.29193 * 8 7 6 33 33 H 1.08999 * 109.46997 * 346.29227 * 8 7 6 34 34 H 1.09000 * 109.46892 * 106.29554 * 8 7 6 35 35 H 1.08993 * 109.88347 * 298.31661 * 14 13 11 36 36 H 1.08993 * 109.88225 * 59.33408 * 14 13 11 37 37 H 1.09002 * 110.72065 * 96.24528 * 15 14 13 38 38 H 1.08997 * 110.71846 * 219.52543 * 15 14 13 39 39 H 0.96705 * 113.99998 * 168.24933 * 17 16 15 40 40 H 0.96997 * 119.99811 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36930 * 323.00537 * 26 13 11 42 42 H 1.09006 * 110.36341 * 85.21715 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.3075 1.3468 5 6 3.2986 1.7014 1.7666 6 6 4.7010 2.1078 1.5802 7 6 5.8209 2.4294 1.4315 8 6 7.2236 2.8350 1.2451 9 6 3.4321 -0.6928 2.1997 10 8 3.3690 -1.8462 1.8278 11 6 3.8401 -0.3814 3.6032 12 8 4.0021 0.7713 3.9464 13 7 4.0282 -1.3806 4.4878 14 6 3.8678 -2.8149 4.2071 15 6 4.2144 -3.5801 5.5018 16 6 5.0949 -2.5623 6.2789 17 8 6.4495 -2.6106 5.8262 18 6 5.0161 -2.8013 7.7647 19 1 4.2000 -2.3845 8.3361 20 6 5.9860 -3.5520 8.3946 21 7 6.0849 -3.5317 9.7059 22 14 7.1596 -4.5980 7.3856 23 1 8.3006 -3.7634 6.9312 24 1 7.6662 -5.7177 8.2190 25 1 6.4447 -5.1444 6.2042 26 6 4.4298 -1.2166 5.8968 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.7547 -0.6985 29 1 3.0098 -0.9809 -0.3036 30 1 2.6520 2.3405 1.1652 31 1 3.0289 1.7984 2.8182 32 1 7.4629 3.6434 1.9359 33 1 7.8768 1.9846 1.4406 34 1 7.3697 3.1775 0.2206 35 1 2.8378 -3.0231 3.9180 36 1 4.5450 -3.1140 3.4072 37 1 3.3108 -3.8158 6.0641 38 1 4.7765 -4.4861 5.2755 39 1 6.9973 -1.8806 6.1459 40 1 6.7670 -4.0602 10.1490 41 1 5.1439 -0.3990 5.9950 42 1 3.5555 -1.0329 6.5214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345971294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:02 Heat of formation + Delta-G solvation = -4.043977 kcal Electronic energy + Delta-G solvation = -26810.172188 eV Core-core repulsion = 22951.818103 eV Total energy + Delta-G solvation = -3858.354086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15085 -40.39253 -39.12763 -37.80874 -36.30893 -35.06830 -34.46397 -33.81648 -32.11932 -30.61843 -30.11916 -29.03326 -27.64130 -26.87805 -24.81339 -23.30524 -21.62061 -20.81715 -19.54123 -19.44919 -18.70671 -18.30854 -17.75007 -17.21103 -17.17667 -16.95043 -16.60899 -16.11785 -15.82914 -15.36507 -15.06832 -14.80340 -14.57867 -14.55952 -14.44794 -14.36339 -14.22588 -14.11023 -13.94083 -13.80475 -13.36251 -13.29992 -12.79173 -12.51279 -12.27591 -12.16305 -12.03198 -11.71875 -11.35539 -11.20217 -10.93197 -10.83913 -10.71141 -10.50927 -10.41964 -10.21868 -9.74203 -8.36766 -6.45962 0.20082 0.79802 1.50784 1.52709 1.60118 1.71120 1.75983 1.83983 1.85213 2.01706 2.44974 2.54444 2.92278 3.04199 3.32614 3.46208 3.47459 3.77482 4.00868 4.09821 4.20943 4.22032 4.34589 4.43327 4.57388 4.65362 4.74635 4.75685 4.78475 4.81042 4.88737 5.00931 5.03617 5.04115 5.13927 5.16334 5.31149 5.49206 5.71238 6.04830 6.13850 6.41031 6.57896 6.60778 6.69243 6.77858 6.90262 7.30091 8.75938 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.003776 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.378809 B = 7413.277276 C = 8359.682402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.247 4.247 3 C 0.221 3.779 4 N -0.576 5.576 5 C 0.213 3.787 6 C -0.224 4.224 7 C -0.184 4.184 8 C -0.044 4.044 9 C 0.516 3.484 10 O -0.523 6.523 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.580 5.580 14 C 0.118 3.882 15 C -0.123 4.123 16 C 0.218 3.782 17 O -0.561 6.561 18 C -0.551 4.551 19 H 0.051 0.949 20 C 0.034 3.966 21 N -0.928 5.928 22 Si 1.000 3.000 23 H -0.280 1.280 24 H -0.334 1.334 25 H -0.265 1.265 26 C 0.098 3.902 27 H 0.249 0.751 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 10.565 -21.586 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.248 4.248 3 C 0.101 3.899 4 N -0.308 5.308 5 C 0.093 3.907 6 C -0.225 4.225 7 C -0.186 4.186 8 C -0.099 4.099 9 C 0.299 3.701 10 O -0.399 6.399 11 C 0.293 3.707 12 O -0.413 6.413 13 N -0.312 5.312 14 C -0.004 4.004 15 C -0.161 4.161 16 C 0.178 3.822 17 O -0.370 6.370 18 C -0.588 4.588 19 H 0.069 0.931 20 C -0.167 4.167 21 N -0.565 5.565 22 Si 0.834 3.166 23 H -0.207 1.207 24 H -0.266 1.266 25 H -0.190 1.190 26 C -0.024 4.024 27 H 0.265 0.735 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.232 0.768 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.775 10.027 -21.808 24.687 hybrid contribution 0.570 -0.083 0.648 0.868 sum -5.204 9.943 -21.159 23.951 Atomic orbital electron populations 1.25808 0.96806 0.99278 0.96247 1.23649 0.95301 1.02197 1.03633 1.18554 0.84065 1.05126 0.82194 1.47843 1.62675 1.06343 1.13939 1.19014 0.87399 0.79741 1.04565 1.22899 0.95678 1.02675 1.01249 1.23377 0.95206 0.98304 1.01702 1.19081 0.84387 1.02266 1.04196 1.20064 0.78117 0.85556 0.86383 1.90739 1.51339 1.20130 1.77702 1.19914 0.79840 0.84693 0.86261 1.90651 1.51924 1.19179 1.79516 1.48459 1.63692 1.07677 1.11419 1.22169 1.02025 0.78243 0.97945 1.23032 1.00149 0.98577 0.94343 1.20166 0.79506 0.90865 0.91701 1.86060 1.22850 1.52132 1.75980 1.21243 1.11171 1.34837 0.91585 0.93093 1.25743 0.98739 0.96754 0.95497 1.70105 1.35280 1.40523 1.10575 0.84868 0.78772 0.76335 0.76672 1.20742 1.26569 1.19018 1.23023 1.00049 1.00055 0.79280 0.73519 0.84865 0.87470 0.85343 0.85999 0.88929 0.89916 0.88115 0.90105 0.90976 0.89127 0.90221 0.76847 0.92290 0.90762 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 19.25 74.32 1.43 -1.17 16 2 C -0.25 -4.74 13.68 31.13 0.43 -4.31 16 3 C 0.22 4.13 5.93 84.58 0.50 4.63 16 4 N -0.58 -14.01 2.41 -844.54 -2.04 -16.05 16 5 C 0.21 4.79 5.54 84.57 0.47 5.26 16 6 C -0.22 -5.78 12.64 31.12 0.39 -5.38 16 7 C -0.18 -4.53 14.13 31.12 0.44 -4.09 16 8 C -0.04 -0.71 10.32 70.18 0.72 0.02 16 9 C 0.52 15.99 7.62 87.27 0.66 16.66 16 10 O -0.52 -17.58 13.65 -3.25 -0.04 -17.62 16 11 C 0.51 17.72 7.80 87.27 0.68 18.40 16 12 O -0.53 -19.40 12.66 -3.27 -0.04 -19.44 16 13 N -0.58 -21.08 3.33 -813.38 -2.71 -23.78 16 14 C 0.12 4.10 5.50 86.73 0.48 4.58 16 15 C -0.12 -4.73 5.93 31.87 0.19 -4.54 16 16 C 0.22 9.40 0.70 -10.07 -0.01 9.39 16 17 O -0.56 -23.64 8.73 -148.98 -1.30 -24.95 16 18 C -0.55 -28.87 8.85 25.60 0.23 -28.64 16 19 H 0.05 2.94 8.02 -2.91 -0.02 2.91 16 20 C 0.03 1.85 5.44 84.65 0.46 2.32 16 21 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 22 Si 1.00 47.32 24.97 68.60 1.71 49.04 16 23 H -0.28 -12.77 7.03 99.48 0.70 -12.07 16 24 H -0.33 -16.23 7.11 99.48 0.71 -15.52 16 25 H -0.26 -12.09 5.73 99.48 0.57 -11.52 16 26 C 0.10 3.84 6.07 86.85 0.53 4.37 16 27 H 0.25 1.99 7.80 -4.42 -0.03 1.95 16 28 H 0.13 1.68 8.10 -2.39 -0.02 1.66 16 29 H 0.11 2.15 7.26 -2.39 -0.02 2.13 16 30 H 0.13 1.98 8.02 -2.38 -0.02 1.96 16 31 H 0.12 3.21 5.34 -2.53 -0.01 3.20 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 2.58 7.82 -2.39 -0.02 2.56 16 36 H 0.07 2.55 7.45 -2.39 -0.02 2.54 16 37 H 0.09 3.38 8.04 -2.39 -0.02 3.36 16 38 H 0.08 3.12 6.71 -2.39 -0.02 3.11 16 39 H 0.38 14.38 9.02 -74.05 -0.67 13.71 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.07 2.91 8.01 -2.39 -0.02 2.89 16 42 H 0.08 3.02 8.00 -2.38 -0.02 3.00 16 Total: -1.00 -70.01 361.30 3.73 -66.28 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.24 Total: 23.83 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 7.60 Total: 17.50 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -4.45 Total: -94.64 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -1.39 Total: -62.01 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.71 Total: 49.04 kcal Total: -70.01 3.73 -66.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345971294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.239 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds