Wall clock time and date at job start Tue Mar 31 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 N 1.46902 * 109.47027 * 179.72353 * 16 14 13 18 18 C 1.46467 * 110.99803 * 295.85247 * 17 16 14 19 19 C 1.53176 * 109.90144 * 163.00058 * 18 17 16 20 20 S 1.81820 * 108.67817 * 62.63655 * 19 18 17 21 21 O 1.42103 * 108.70323 * 193.43264 * 20 19 18 22 22 O 1.42099 * 108.82508 * 61.98627 * 20 19 18 23 23 C 1.81819 * 101.01909 * 307.68651 * 20 19 18 24 24 C 1.46466 * 110.99804 * 170.00025 * 17 16 14 25 25 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 30 30 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 31 31 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 34 34 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09003 * 109.40253 * 283.13708 * 18 17 16 38 38 H 1.09008 * 109.40061 * 42.87090 * 18 17 16 39 39 H 1.09005 * 109.60664 * 302.88052 * 19 18 17 40 40 H 1.08995 * 109.60900 * 182.39378 * 19 18 17 41 41 H 1.09004 * 109.60402 * 292.56025 * 23 20 19 42 42 H 1.08996 * 109.60467 * 172.07036 * 23 20 19 43 43 H 1.09006 * 109.40313 * 317.12703 * 24 17 16 44 44 H 1.08999 * 109.40251 * 76.86771 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 7 1.8561 -0.4794 6.0994 18 6 1.3083 -1.8355 6.1781 19 6 2.1284 -2.6727 7.1643 20 16 1.9865 -1.9296 8.8176 21 8 2.9763 -2.5023 9.6611 22 8 0.6242 -1.9636 9.2202 23 6 2.4473 -0.2065 8.4648 24 6 1.5849 0.3046 7.3065 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9942 0.7581 2.3564 35 1 1.7326 1.2439 4.9041 36 1 0.2803 0.2149 4.8959 37 1 0.2731 -1.7888 6.5162 38 1 1.3451 -2.2986 5.1920 39 1 3.1739 -2.6813 6.8557 40 1 1.7432 -3.6921 7.1873 41 1 3.4999 -0.1592 8.1855 42 1 2.2731 0.4070 9.3488 43 1 1.8171 1.3527 7.1174 44 1 0.5316 0.2104 7.5704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412167532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:22 Heat of formation + Delta-G solvation = -95.513087 kcal Electronic energy + Delta-G solvation = -25368.799530 eV Core-core repulsion = 21641.922998 eV Total energy + Delta-G solvation = -3726.876533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.92534 -38.10899 -37.15588 -36.31494 -36.26823 -33.38999 -32.16626 -31.73303 -30.79486 -27.11342 -25.80299 -25.48875 -24.44423 -24.41005 -21.77067 -20.21510 -19.07152 -18.86745 -17.33032 -17.15600 -16.58243 -16.07930 -16.01853 -15.90486 -15.57092 -15.01548 -14.83884 -14.57923 -14.41262 -13.59243 -13.47768 -13.01417 -12.90534 -12.85683 -12.67286 -12.42700 -12.32439 -12.25912 -12.23139 -12.08865 -11.90929 -11.42608 -11.26573 -10.99985 -10.91391 -10.71552 -10.47464 -10.38258 -10.25600 -9.71061 -9.62997 -9.34345 -8.86302 -8.76578 -8.52332 -8.38512 -6.08269 -4.18382 -0.24486 2.36682 2.89815 3.01505 3.23075 3.32099 3.36346 3.36807 3.68130 3.82872 4.18229 4.33019 4.35417 4.53546 4.63438 4.76677 4.89973 5.02578 5.07858 5.14196 5.18914 5.25066 5.36719 5.56395 5.69390 6.12825 6.24567 6.36921 6.43654 6.57581 6.69270 6.74037 6.85327 6.93377 6.94107 7.27986 7.48370 7.63567 7.94064 7.94749 8.08145 8.31850 8.58655 8.82678 9.47974 10.93179 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.002444 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.453493 B =11453.559518 C =11766.481929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.716 5.716 14 C 0.502 3.498 15 O -0.535 6.535 16 C 0.039 3.961 17 N -0.539 5.539 18 C 0.058 3.942 19 C -0.584 4.584 20 S 2.408 3.592 21 O -0.946 6.946 22 O -0.943 6.943 23 C -0.596 4.596 24 C 0.065 3.935 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 1.652 18.697 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.011 3.989 13 N -0.368 5.368 14 C 0.287 3.713 15 O -0.413 6.413 16 C -0.092 4.092 17 N -0.265 5.265 18 C -0.070 4.070 19 C -0.715 4.715 20 S 2.591 3.409 21 O -0.943 6.943 22 O -0.940 6.940 23 C -0.725 4.725 24 C -0.064 4.064 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.118 0.882 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.397 0.603 19.400 19.413 hybrid contribution -0.419 0.427 -1.578 1.687 sum -0.816 1.030 17.822 17.870 Atomic orbital electron populations 1.21835 0.97776 0.99165 1.00096 1.18357 0.92767 0.92766 0.90591 1.21835 0.98615 0.98339 1.00086 1.21021 1.31471 1.12128 0.89881 0.92388 1.24880 0.94829 0.94912 0.98900 1.69809 1.36657 1.22794 1.23184 0.86517 0.78659 0.79771 0.82950 1.19741 1.21044 1.21040 1.21719 0.98194 0.95713 0.83284 1.46314 1.52571 1.31904 1.05967 1.20304 0.81268 0.85165 0.84582 1.90655 1.37782 1.26302 1.86540 1.21970 0.99435 0.99065 0.88696 1.60767 1.61769 1.02286 1.01645 1.21953 0.94395 0.87868 1.02792 1.30109 1.11356 1.10626 1.19377 1.08266 0.75439 0.79003 0.78185 1.93592 1.61372 1.75711 1.63602 1.93586 1.33805 1.86056 1.80562 1.30189 1.11436 1.23995 1.06924 1.21775 0.97262 0.99726 0.87630 0.97532 0.89569 0.95456 0.95418 0.89587 0.97518 0.93025 0.92649 0.92727 0.76709 0.87298 0.91219 0.92867 0.86227 0.83625 0.84527 0.83842 0.84510 0.88159 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.82 8.01 -34.44 -0.28 -13.10 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.94 9.35 55.43 0.52 -22.42 16 8 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.63 4.50 -4.04 -0.02 2.61 16 13 N -0.72 -11.16 4.96 -60.29 -0.30 -11.46 16 14 C 0.50 7.33 7.38 -10.98 -0.08 7.25 16 15 O -0.54 -9.64 14.33 5.55 0.08 -9.56 16 16 C 0.04 0.38 5.45 -4.97 -0.03 0.35 16 17 N -0.54 -5.23 4.19 -236.57 -0.99 -6.22 16 18 C 0.06 0.59 4.94 -3.97 -0.02 0.57 16 19 C -0.58 -5.06 6.58 37.25 0.25 -4.81 16 20 S 2.41 21.35 5.34 -107.50 -0.57 20.77 16 21 O -0.95 -11.62 18.11 -57.81 -1.05 -12.67 16 22 O -0.94 -11.12 18.10 -57.81 -1.05 -12.17 16 23 C -0.60 -3.76 6.58 37.25 0.24 -3.51 16 24 C 0.06 0.45 5.40 -3.97 -0.02 0.43 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.48 6.16 -40.82 -0.25 5.22 16 35 H 0.11 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.05 0.47 7.93 -51.93 -0.41 0.06 16 38 H 0.12 1.49 5.61 -51.92 -0.29 1.20 16 39 H 0.15 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.53 7.77 -51.93 -0.40 0.12 16 44 H 0.06 0.38 7.93 -51.93 -0.41 -0.04 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -33.04 354.33 -9.43 -42.47 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.87 Total: 3.15 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 0.48 Total: -12.45 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.77 Total: -40.09 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -2.01 Total: -34.40 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 21.35 SS G_CDS: -0.57 Total: 20.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.04 -9.43 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412167532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.048 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds