Wall clock time and date at job start Tue Mar 31 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45751 * 117.95166 * 2 1 4 4 C 1.52920 * 110.48825 * 199.07218 * 3 2 1 5 5 H 1.09005 * 109.59820 * 69.16781 * 4 3 2 6 6 N 1.46497 * 109.60228 * 189.49021 * 4 3 2 7 7 S 1.65599 * 120.00110 * 265.00119 * 6 4 3 8 8 O 1.42105 * 104.27797 * 181.07392 * 7 6 4 9 9 O 1.42101 * 104.27901 * 308.93100 * 7 6 4 10 10 C 1.81397 * 104.44825 * 65.00280 * 7 6 4 11 11 C 1.53009 * 109.47235 * 179.97438 * 10 7 6 12 12 C 1.52992 * 109.47064 * 300.00294 * 11 10 7 13 13 C 1.52995 * 109.46650 * 60.00101 * 11 10 7 14 14 C 1.50697 * 109.46948 * 179.97438 * 11 10 7 15 15 H 1.07997 * 120.00322 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99943 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99809 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00266 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.46941 * 59.99879 * 18 16 14 20 20 H 1.48495 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46812 * 300.00133 * 18 16 14 22 22 C 1.53340 * 108.67900 * 309.25174 * 4 3 2 23 23 C 1.53058 * 108.44008 * 67.51441 * 22 4 3 24 24 C 1.33361 * 117.94197 * 179.97438 * 2 1 3 25 25 O 1.21280 * 118.24590 * 357.75177 * 24 2 1 26 26 H 1.09000 * 109.47109 * 89.99727 * 1 2 3 27 27 H 1.08999 * 109.47619 * 209.99992 * 1 2 3 28 28 H 1.09005 * 109.46837 * 330.00007 * 1 2 3 29 29 H 1.09001 * 109.30065 * 78.76720 * 3 2 1 30 30 H 1.08995 * 109.13147 * 319.28393 * 3 2 1 31 31 H 0.96999 * 119.99844 * 85.00844 * 6 4 3 32 32 H 1.09004 * 109.47032 * 299.99803 * 10 7 6 33 33 H 1.09000 * 109.47124 * 60.00075 * 10 7 6 34 34 H 1.08998 * 109.47786 * 59.99779 * 12 11 10 35 35 H 1.09005 * 109.47213 * 179.97438 * 12 11 10 36 36 H 1.09009 * 109.46944 * 299.99524 * 12 11 10 37 37 H 1.09004 * 109.47448 * 60.00057 * 13 11 10 38 38 H 1.09003 * 109.46897 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47695 * 299.99731 * 13 11 10 40 40 H 0.97001 * 119.99986 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.67495 * 187.26298 * 22 4 3 42 42 H 1.08997 * 109.67211 * 307.79607 * 22 4 3 43 43 H 1.08999 * 109.40060 * 190.99042 * 23 22 4 44 44 H 1.08998 * 109.33310 * 71.19530 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2875 0.0000 4 6 3.5950 1.1257 -0.4681 5 1 3.6102 0.8752 -1.5288 6 7 4.3255 2.3763 -0.2478 7 16 4.4696 3.4783 -1.4754 8 8 5.2457 4.5283 -0.9144 9 8 4.9519 2.7176 -2.5745 10 6 2.7716 4.0368 -1.7839 11 6 2.7718 5.0712 -2.9113 12 6 3.6362 6.2668 -2.5063 13 6 3.3398 4.4388 -4.1834 14 6 1.3610 5.5346 -3.1681 15 1 0.5458 5.1320 -2.5852 16 6 1.1110 6.4734 -4.1464 17 7 2.1037 6.9641 -4.8559 18 14 -0.6376 7.0485 -4.4642 19 1 -1.1892 7.6616 -3.2293 20 1 -0.6374 8.0523 -5.5585 21 1 -1.4765 5.8879 -4.8579 22 6 4.2493 -0.0016 0.3396 23 6 3.5838 -1.3242 -0.0481 24 6 2.0899 -1.1781 0.0005 25 8 1.4157 -2.1854 0.0429 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 2.1400 1.6997 1.0090 30 1 1.6262 1.9689 -0.6717 31 1 4.7249 2.5587 0.6171 32 1 2.1556 3.1848 -2.0721 33 1 2.3671 4.4876 -0.8777 34 1 4.6565 5.9313 -2.3209 35 1 3.6367 7.0035 -3.3097 36 1 3.2314 6.7173 -1.5999 37 1 2.7239 3.5870 -4.4720 38 1 3.3395 5.1756 -4.9868 39 1 4.3602 4.1033 -3.9981 40 1 1.9279 7.6243 -5.5445 41 1 5.3143 -0.0459 0.1117 42 1 4.1088 0.1810 1.4050 43 1 3.8941 -2.1035 0.6480 44 1 3.8880 -1.5988 -1.0582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414213971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:23 Heat of formation + Delta-G solvation = -108.784449 kcal Electronic energy + Delta-G solvation = -26536.519257 eV Core-core repulsion = 22809.067235 eV Total energy + Delta-G solvation = -3727.452022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69974 -37.49260 -36.61277 -36.36917 -35.44787 -34.93546 -32.83647 -31.74389 -28.69190 -27.12521 -26.77522 -25.78755 -25.28775 -24.44566 -22.39177 -19.80653 -19.29656 -18.69107 -17.47992 -17.06856 -16.63624 -16.37731 -15.99940 -15.46435 -15.41172 -14.81637 -14.73224 -14.51781 -14.20930 -13.54874 -13.25626 -13.10539 -12.87392 -12.72509 -12.57289 -12.32775 -12.26391 -12.15349 -11.93759 -11.60368 -11.56464 -11.20765 -11.11473 -11.09657 -10.98930 -10.78447 -10.47960 -10.34999 -10.19184 -9.97602 -9.81815 -9.72558 -9.42372 -8.93420 -8.76634 -8.45675 -6.09233 -4.21745 0.69947 2.45156 2.66415 3.10402 3.22697 3.28939 3.29895 4.11833 4.26511 4.30878 4.31963 4.37324 4.53044 4.68384 4.92388 5.00948 5.12637 5.13010 5.16310 5.24581 5.40612 5.49452 5.50673 5.56557 5.64118 5.69200 5.72128 5.90676 6.12152 6.27306 6.61823 6.71999 6.82367 6.88757 6.98529 7.21290 7.24326 7.43027 7.61585 7.91639 7.94523 8.02323 8.25963 8.76285 9.44105 10.92021 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.004529 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.728209 B = 6181.101834 C = 7527.585297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.084 3.916 4 C 0.134 3.866 5 H 0.105 0.895 6 N -1.120 6.120 7 S 2.589 3.411 8 O -0.960 6.960 9 O -0.960 6.960 10 C -0.584 4.584 11 C 0.084 3.916 12 C -0.164 4.164 13 C -0.164 4.164 14 C -0.504 4.504 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.126 4.126 23 C -0.133 4.133 24 C 0.513 3.487 25 O -0.556 6.556 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.027 0.973 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -11.172 11.010 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.335 5.335 3 C -0.041 4.041 4 C 0.026 3.974 5 H 0.123 0.877 6 N -0.875 5.875 7 S 2.687 3.313 8 O -0.950 6.950 9 O -0.950 6.950 10 C -0.718 4.718 11 C 0.081 3.919 12 C -0.222 4.222 13 C -0.222 4.222 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.165 4.165 23 C -0.173 4.173 24 C 0.302 3.698 25 O -0.435 6.435 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.369 -11.356 10.294 15.509 hybrid contribution -1.582 0.571 0.365 1.721 sum 0.786 -10.785 10.659 15.183 Atomic orbital electron populations 1.21771 0.79020 1.03422 1.02615 1.47120 1.07738 1.05739 1.72934 1.22237 0.93444 0.85125 1.03284 1.20968 0.89732 0.84898 1.01845 0.87706 1.55910 1.69314 1.31436 1.30857 1.05815 0.79044 0.73251 0.73166 1.93570 1.68332 1.55539 1.77587 1.93555 1.78988 1.70274 1.52186 1.30647 1.19897 1.10778 1.10433 1.17922 0.97761 0.88729 0.87463 1.22278 0.96003 1.01685 1.02193 1.22282 0.96976 1.00838 1.02084 1.20869 0.90961 1.23559 1.18914 0.92374 1.24930 0.97134 0.95944 0.95632 1.69785 1.30526 1.29397 1.22336 0.86600 0.84605 0.78523 0.77912 1.20274 1.21161 1.20283 1.21948 1.01383 0.92569 1.00648 1.21646 0.90862 0.99262 1.05557 1.20220 0.91034 0.82703 0.75845 1.90712 1.66516 1.35700 1.50573 0.92128 0.90055 0.90945 0.90372 0.89260 0.75191 0.86505 0.86046 0.95417 0.88599 0.94420 0.94482 0.88610 0.95346 0.92625 0.89200 0.90361 0.87564 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.24 59.85 0.61 1.34 16 2 N -0.60 -6.40 3.21 -182.85 -0.59 -6.99 16 3 C 0.08 0.80 5.83 -4.49 -0.03 0.77 16 4 C 0.13 1.34 2.76 -67.80 -0.19 1.16 16 5 H 0.11 1.16 7.48 -51.93 -0.39 0.77 16 6 N -1.12 -12.44 5.38 -4.78 -0.03 -12.46 16 7 S 2.59 42.93 4.47 -107.50 -0.48 42.45 16 8 O -0.96 -18.52 15.70 -57.54 -0.90 -19.42 16 9 O -0.96 -18.51 15.02 -57.54 -0.86 -19.37 16 10 C -0.58 -10.21 4.38 37.16 0.16 -10.04 16 11 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 12 C -0.16 -3.85 7.77 37.15 0.29 -3.56 16 13 C -0.16 -3.85 7.77 37.16 0.29 -3.56 16 14 C -0.50 -12.56 8.01 -34.44 -0.28 -12.83 16 15 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.07 1.69 5.15 -17.82 -0.09 1.59 16 17 N -0.88 -23.36 9.35 55.43 0.52 -22.85 16 18 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.13 -0.98 5.57 -26.53 -0.15 -1.12 16 23 C -0.13 -1.13 6.03 -28.10 -0.17 -1.30 16 24 C 0.51 6.05 7.47 -11.87 -0.09 5.96 16 25 O -0.56 -8.51 16.18 5.56 0.09 -8.42 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.85 7.13 -51.93 -0.37 0.48 16 28 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.87 5.98 -51.93 -0.31 0.56 16 31 H 0.41 3.62 8.80 -34.47 -0.30 3.31 16 32 H 0.12 1.81 6.65 -51.92 -0.35 1.46 16 33 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 34 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 35 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 36 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -32.95 348.11 -8.42 -41.37 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.68 Total: 5.23 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 0.29 Total: -19.77 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.09 Total: -42.30 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.68 Total: -47.21 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 42.93 SS G_CDS: -0.48 Total: 42.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.95 -8.42 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414213971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.417 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds