Wall clock time and date at job start Tue Mar 31 2020 04:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45818 * 117.88109 * 2 1 4 4 C 1.52920 * 110.45060 * 161.06678 * 3 2 1 5 5 H 1.08995 * 109.60282 * 290.65503 * 4 3 2 6 6 N 1.46499 * 109.60417 * 170.33160 * 4 3 2 7 7 S 1.65608 * 119.99768 * 95.32312 * 6 4 3 8 8 O 1.42098 * 104.27681 * 308.92820 * 7 6 4 9 9 O 1.42102 * 104.27508 * 181.07464 * 7 6 4 10 10 C 1.81398 * 104.44981 * 65.00268 * 7 6 4 11 11 C 1.52998 * 109.47114 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46972 * 60.00118 * 11 10 7 13 13 C 1.52997 * 109.47257 * 300.00110 * 11 10 7 14 14 C 1.50701 * 109.47107 * 179.97438 * 11 10 7 15 15 H 1.08008 * 119.99993 * 3.19768 * 14 11 10 16 16 C 1.37871 * 120.00118 * 182.92114 * 14 11 10 17 17 N 1.31515 * 119.99979 * 353.16770 * 16 14 11 18 18 Si 1.86801 * 119.99966 * 173.16506 * 16 14 11 19 19 H 1.48504 * 109.46907 * 94.97321 * 18 16 14 20 20 H 1.48496 * 109.47183 * 214.96773 * 18 16 14 21 21 H 1.48498 * 109.47381 * 334.97016 * 18 16 14 22 22 C 1.53340 * 108.81146 * 50.49619 * 4 3 2 23 23 C 1.53072 * 108.42521 * 292.55291 * 22 4 3 24 24 C 1.33347 * 117.94806 * 179.82582 * 2 1 3 25 25 O 1.21283 * 118.24863 * 2.20045 * 24 2 1 26 26 H 1.09003 * 109.46885 * 180.16663 * 1 2 3 27 27 H 1.08994 * 109.47594 * 300.16863 * 1 2 3 28 28 H 1.08997 * 109.47181 * 60.17506 * 1 2 3 29 29 H 1.08999 * 109.46183 * 40.67776 * 3 2 1 30 30 H 1.09000 * 109.17628 * 281.27953 * 3 2 1 31 31 H 0.96997 * 120.00099 * 275.32767 * 6 4 3 32 32 H 1.09005 * 109.46947 * 59.99937 * 10 7 6 33 33 H 1.09002 * 109.47109 * 300.00334 * 10 7 6 34 34 H 1.09005 * 109.47216 * 179.97438 * 12 11 10 35 35 H 1.08995 * 109.47195 * 299.99962 * 12 11 10 36 36 H 1.08995 * 109.47330 * 60.00097 * 12 11 10 37 37 H 1.09007 * 109.46918 * 306.90977 * 13 11 10 38 38 H 1.08996 * 109.47597 * 66.91294 * 13 11 10 39 39 H 1.09004 * 109.47349 * 186.91802 * 13 11 10 40 40 H 0.97002 * 119.99834 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.67455 * 52.27931 * 22 4 3 42 42 H 1.08998 * 109.68053 * 172.81791 * 22 4 3 43 43 H 1.08995 * 109.40412 * 169.02972 * 23 22 4 44 44 H 1.09010 * 109.39729 * 288.85243 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1469 1.2889 0.0000 4 6 3.5947 1.1274 0.4649 5 1 3.6125 0.8786 1.5259 6 7 4.3253 2.3773 0.2409 7 16 4.4795 3.4777 1.4689 8 8 3.1522 3.6650 1.9403 9 8 5.2090 4.5503 0.8886 10 6 5.4840 2.6260 2.7163 11 6 5.6998 3.5511 3.9157 12 6 4.3456 3.9262 4.5207 13 6 6.4228 4.8194 3.4579 14 6 6.5338 2.8433 4.9523 15 1 6.9190 1.8543 4.7522 16 6 6.8098 3.4605 6.1539 17 7 6.4618 4.7144 6.3442 18 14 7.6781 2.5157 7.5114 19 1 9.1376 2.7817 7.4441 20 1 7.1557 2.9530 8.8309 21 1 7.4314 1.0617 7.3385 22 6 4.2493 -0.0022 -0.3395 23 6 3.5838 -1.3237 0.0527 24 6 2.0900 -1.1779 0.0036 25 8 1.4159 -2.1855 -0.0344 26 1 -0.3633 -1.0277 0.0030 27 1 -0.3634 0.5164 0.8884 28 1 -0.3633 0.5111 -0.8915 29 1 1.6278 1.9744 0.6699 30 1 2.1364 1.6996 -1.0096 31 1 4.7185 2.5604 -0.6267 32 1 6.4490 2.3592 2.2854 33 1 4.9692 1.7222 3.0421 34 1 4.4993 4.5849 5.3754 35 1 3.7420 4.4379 3.7711 36 1 3.8305 3.0226 4.8468 37 1 7.3293 4.5461 2.9178 38 1 5.7685 5.3941 2.8024 39 1 6.6858 5.4217 4.3276 40 1 6.6563 5.1488 7.1895 41 1 4.1087 0.1772 -1.4054 42 1 5.3142 -0.0458 -0.1115 43 1 3.8943 -2.1052 -0.6407 44 1 3.8869 -1.5956 1.0639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414213997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:25 Heat of formation + Delta-G solvation = -109.297813 kcal Electronic energy + Delta-G solvation = -26361.229111 eV Core-core repulsion = 22633.754828 eV Total energy + Delta-G solvation = -3727.474283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69476 -37.48907 -36.59064 -36.35396 -35.42541 -34.95492 -32.81309 -31.73647 -28.66457 -27.10908 -26.73736 -25.79109 -25.28853 -24.47243 -22.38192 -19.88353 -19.09400 -18.79218 -17.38866 -17.11098 -16.68655 -16.33745 -16.01700 -15.44256 -15.36318 -14.82153 -14.73602 -14.49464 -14.16948 -13.49545 -13.27015 -13.12388 -12.88737 -12.71054 -12.58667 -12.40148 -12.16971 -12.10299 -11.89742 -11.60511 -11.53606 -11.28181 -11.14709 -11.04070 -11.01925 -10.78478 -10.44553 -10.38530 -10.19684 -9.96766 -9.75565 -9.73115 -9.43841 -8.92913 -8.79735 -8.42218 -6.09643 -4.21243 0.70779 2.44301 2.70634 3.09352 3.21879 3.30271 3.32398 4.13039 4.26026 4.30650 4.32403 4.40661 4.54002 4.70447 4.86137 5.01278 5.15302 5.15964 5.21922 5.34153 5.39128 5.50041 5.51454 5.58528 5.65404 5.68699 5.73043 5.91241 6.14769 6.28789 6.61117 6.71106 6.82852 6.88883 6.98531 7.22429 7.23968 7.41434 7.62167 7.91409 7.94427 8.03253 8.27489 8.76984 9.44358 10.91426 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003973 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.410373 B = 7045.567071 C = 7789.773704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.603 5.603 3 C 0.093 3.907 4 C 0.141 3.859 5 H 0.096 0.904 6 N -1.121 6.121 7 S 2.589 3.411 8 O -0.961 6.961 9 O -0.961 6.961 10 C -0.581 4.581 11 C 0.082 3.918 12 C -0.163 4.163 13 C -0.162 4.162 14 C -0.503 4.503 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.132 4.132 23 C -0.133 4.133 24 C 0.514 3.486 25 O -0.558 6.558 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.415 0.585 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.023 0.977 39 H 0.100 0.900 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 -7.415 -13.389 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C -0.032 4.032 4 C 0.032 3.968 5 H 0.114 0.886 6 N -0.876 5.876 7 S 2.688 3.312 8 O -0.951 6.951 9 O -0.951 6.951 10 C -0.715 4.715 11 C 0.079 3.921 12 C -0.221 4.221 13 C -0.220 4.220 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.171 4.171 23 C -0.174 4.174 24 C 0.303 3.697 25 O -0.437 6.437 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.415 -6.925 -13.126 16.168 hybrid contribution 1.034 -0.849 0.586 1.461 sum -5.381 -7.774 -12.539 15.704 Atomic orbital electron populations 1.21815 0.79310 1.04631 1.01728 1.47146 1.07765 1.05912 1.72774 1.22062 0.93276 0.84712 1.03103 1.20885 0.90314 0.84563 1.01041 0.88591 1.55951 1.69017 1.33614 1.29035 1.05808 0.76111 0.74417 0.74909 1.93547 1.36195 1.84384 1.80979 1.93575 1.74513 1.50833 1.76165 1.30540 1.13301 1.12883 1.14740 1.17941 0.94724 0.90658 0.88728 1.22253 0.95436 1.01415 1.03008 1.22273 0.98924 0.99082 1.01704 1.20923 1.32191 1.01966 0.99187 0.92265 1.24929 0.95545 0.94777 0.98404 1.69804 1.46998 1.10278 1.24871 0.86545 0.79576 0.80197 0.81485 1.20722 1.21028 1.19868 1.22035 1.01419 0.92673 1.00930 1.21647 0.90824 0.99303 1.05593 1.20232 0.91099 0.82769 0.75647 1.90698 1.66399 1.35729 1.50924 0.88974 0.91724 0.92146 0.88477 0.90911 0.75199 0.86092 0.86514 0.88864 0.95187 0.94418 0.94667 0.95776 0.88174 0.92687 0.90296 0.89062 0.87519 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.47 59.85 0.63 1.28 16 2 N -0.60 -6.52 3.21 -182.81 -0.59 -7.10 16 3 C 0.09 0.95 6.02 -4.45 -0.03 0.92 16 4 C 0.14 1.40 2.62 -67.80 -0.18 1.22 16 5 H 0.10 0.98 7.15 -51.93 -0.37 0.61 16 6 N -1.12 -12.35 5.37 -4.78 -0.03 -12.37 16 7 S 2.59 42.56 4.41 -107.50 -0.47 42.09 16 8 O -0.96 -17.93 14.96 -57.54 -0.86 -18.79 16 9 O -0.96 -18.50 15.85 -57.54 -0.91 -19.41 16 10 C -0.58 -10.31 4.90 37.16 0.18 -10.13 16 11 C 0.08 1.88 0.52 -155.66 -0.08 1.80 16 12 C -0.16 -3.83 7.74 37.16 0.29 -3.54 16 13 C -0.16 -3.83 7.61 37.16 0.28 -3.55 16 14 C -0.50 -12.69 8.00 -34.44 -0.28 -12.97 16 15 H 0.06 1.45 7.76 -52.48 -0.41 1.04 16 16 C 0.07 1.69 5.11 -17.82 -0.09 1.60 16 17 N -0.88 -23.42 9.36 55.43 0.52 -22.90 16 18 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.13 -0.98 5.57 -26.52 -0.15 -1.13 16 23 C -0.13 -1.12 6.03 -28.10 -0.17 -1.29 16 24 C 0.51 6.06 7.47 -11.87 -0.09 5.97 16 25 O -0.56 -8.50 15.95 5.55 0.09 -8.42 16 26 H 0.09 0.99 6.59 -51.93 -0.34 0.65 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 1.11 7.63 -51.93 -0.40 0.71 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.41 3.61 8.80 -34.48 -0.30 3.30 16 32 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 33 H 0.12 1.84 7.45 -51.92 -0.39 1.45 16 34 H 0.09 2.38 6.11 -51.93 -0.32 2.07 16 35 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.54 5.98 -51.93 -0.31 0.23 16 39 H 0.10 2.59 5.91 -51.93 -0.31 2.28 16 40 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.11 0.83 8.14 -51.92 -0.42 0.40 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -32.77 350.61 -8.46 -41.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.79 Total: 5.14 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 0.32 Total: -19.81 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.09 Total: -42.37 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.68 Total: -46.62 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.47 Total: 42.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.77 -8.46 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414213997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.070 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds