Wall clock time and date at job start Tue Mar 31 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70387 * 2 1 4 4 C 1.53197 * 109.58576 * 239.64462 * 2 1 3 5 5 H 1.08999 * 109.49737 * 65.59096 * 4 2 1 6 6 N 1.46495 * 109.49728 * 305.52676 * 4 2 1 7 7 C 1.34782 * 119.99824 * 155.00023 * 6 4 2 8 8 O 1.21277 * 120.00065 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00049 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47079 * 179.97438 * 9 7 6 11 11 S 1.81408 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.81400 * 101.92067 * 180.02562 * 11 10 9 13 13 O 1.42105 * 108.57653 * 294.48709 * 11 10 9 14 14 O 1.42097 * 108.57963 * 65.51491 * 11 10 9 15 15 C 1.53042 * 109.31127 * 185.57570 * 4 2 1 16 16 C 1.53040 * 109.53672 * 61.36708 * 15 4 2 17 17 C 1.53621 * 109.24402 * 298.50865 * 16 15 4 18 18 N 1.46931 * 108.54396 * 54.85734 * 17 16 15 19 19 C 1.36930 * 120.63423 * 126.36910 * 18 17 16 20 20 H 1.08002 * 120.00202 * 209.47055 * 19 18 17 21 21 C 1.38816 * 119.99659 * 29.18268 * 19 18 17 22 22 N 1.31621 * 119.99713 * 16.09724 * 21 19 18 23 23 Si 1.86802 * 119.99915 * 196.08589 * 21 19 18 24 24 H 1.48502 * 109.46819 * 90.00670 * 23 21 19 25 25 H 1.48498 * 109.46921 * 210.00635 * 23 21 19 26 26 H 1.48494 * 109.47286 * 330.00504 * 23 21 19 27 27 H 1.08997 * 109.46695 * 299.64156 * 1 2 3 28 28 H 1.08993 * 109.46980 * 59.64800 * 1 2 3 29 29 H 1.09000 * 109.47040 * 179.64414 * 1 2 3 30 30 H 0.96995 * 120.00713 * 335.00218 * 6 4 2 31 31 H 1.08995 * 109.47474 * 299.99966 * 9 7 6 32 32 H 1.09010 * 109.46981 * 59.99896 * 9 7 6 33 33 H 1.08996 * 109.47674 * 299.99868 * 10 9 7 34 34 H 1.08999 * 109.47093 * 60.00687 * 10 9 7 35 35 H 1.08996 * 109.47222 * 59.99604 * 12 11 10 36 36 H 1.08996 * 109.47341 * 180.02562 * 12 11 10 37 37 H 1.09008 * 109.47078 * 299.99943 * 12 11 10 38 38 H 1.08997 * 109.45742 * 181.38632 * 15 4 2 39 39 H 1.08996 * 109.46321 * 301.35955 * 15 4 2 40 40 H 1.09003 * 109.50032 * 58.58513 * 16 15 4 41 41 H 1.08999 * 109.49642 * 178.67888 * 16 15 4 42 42 H 1.08998 * 109.74076 * 295.12428 * 17 16 15 43 43 H 1.09001 * 109.66664 * 174.54617 * 17 16 15 44 44 H 0.97003 * 119.99345 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2455 5 1 1.7655 -0.1672 -2.1369 6 7 1.4515 -2.0679 -1.3071 7 6 1.3285 -2.6964 -2.4931 8 8 1.7084 -2.1540 -3.5091 9 6 0.7188 -4.0731 -2.5566 10 6 0.6968 -4.5546 -4.0087 11 16 -0.0377 -6.2115 -4.0853 12 6 0.0383 -6.5734 -5.8612 13 8 0.8174 -7.1178 -3.4021 14 8 -1.4022 -6.1201 -3.6994 15 6 3.5675 -0.8479 -1.1702 16 6 3.9570 -1.6657 0.0634 17 6 3.4658 -0.9420 1.3263 18 7 2.0226 -0.6996 1.1945 19 6 1.1538 -1.1127 2.1689 20 1 0.1393 -1.3782 1.9107 21 6 1.5788 -1.1959 3.4878 22 7 2.6872 -0.5922 3.8614 23 14 0.5775 -2.1643 4.7324 24 1 1.0441 -3.5740 4.7537 25 1 0.7501 -1.5653 6.0802 26 1 -0.8575 -2.1235 4.3527 27 1 -0.3632 0.5083 0.8932 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3633 -1.0276 -0.0064 30 1 1.1479 -2.5020 -0.4946 31 1 1.3118 -4.7613 -1.9543 32 1 -0.3000 -4.0375 -2.1705 33 1 0.1035 -3.8664 -4.6108 34 1 1.7154 -4.5902 -4.3952 35 1 1.0763 -6.5499 -6.1927 36 1 -0.3813 -7.5617 -6.0489 37 1 -0.5351 -5.8256 -6.4092 38 1 3.9378 -1.3448 -2.0669 39 1 4.0062 0.1473 -1.0991 40 1 3.4984 -2.6529 0.0052 41 1 5.0412 -1.7696 0.1036 42 1 3.9878 0.0089 1.4323 43 1 3.6533 -1.5638 2.2018 44 1 2.9839 -0.6501 4.7831 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486177331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:20 Heat of formation + Delta-G solvation = -90.871605 kcal Electronic energy + Delta-G solvation = -25946.589489 eV Core-core repulsion = 22219.914226 eV Total energy + Delta-G solvation = -3726.675263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.85585 -37.74618 -37.21654 -36.27021 -34.00802 -33.28970 -32.38443 -31.68333 -29.99046 -29.43580 -26.47267 -25.21858 -24.84622 -22.01828 -20.87068 -20.23565 -19.12924 -18.77591 -17.61631 -16.58959 -16.48844 -16.25575 -16.05292 -15.48931 -15.35551 -14.91837 -14.18959 -13.96181 -13.85076 -13.55712 -13.53633 -13.29439 -13.05998 -13.01960 -12.61992 -12.58985 -12.31795 -12.22482 -11.89514 -11.65083 -11.35539 -11.30034 -11.27049 -11.00542 -10.87695 -10.74434 -10.63805 -10.55057 -10.14414 -10.05338 -9.71897 -9.61050 -9.34514 -8.60689 -8.49280 -6.72251 -5.84944 -3.30581 -0.31579 2.44641 2.84224 3.23617 3.33881 3.41325 3.42314 3.64545 3.73379 4.27056 4.42590 4.43918 4.44290 4.71493 4.93766 5.24809 5.27618 5.28525 5.33873 5.35008 5.53756 5.56338 5.59633 5.70268 5.91780 6.08075 6.18131 6.27429 6.37270 6.48374 6.62632 6.63136 6.73527 6.89244 6.93003 7.04897 7.33550 7.62041 7.74797 7.92531 8.38124 8.51418 9.14144 9.77117 10.34182 11.22885 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003640 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.307037 B = 7690.026851 C = 8606.591791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.133 3.867 5 H 0.076 0.924 6 N -0.698 5.698 7 C 0.517 3.483 8 O -0.555 6.555 9 C -0.137 4.137 10 C -0.590 4.590 11 S 2.421 3.579 12 C -0.656 4.656 13 O -0.938 6.938 14 O -0.939 6.939 15 C -0.121 4.121 16 C -0.141 4.141 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.259 4.259 20 H 0.071 0.929 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.411 0.589 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.018 0.982 43 H 0.086 0.914 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 -7.637 -16.928 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.027 3.973 5 H 0.094 0.906 6 N -0.349 5.349 7 C 0.301 3.699 8 O -0.434 6.434 9 C -0.178 4.178 10 C -0.719 4.719 11 S 2.603 3.397 12 C -0.805 4.805 13 O -0.936 6.936 14 O -0.936 6.936 15 C -0.159 4.159 16 C -0.180 4.180 17 C 0.046 3.954 18 N -0.310 5.310 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.105 0.895 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.931 -7.755 -16.765 18.703 hybrid contribution -0.136 -0.135 0.394 0.438 sum -3.067 -7.889 -16.371 18.430 Atomic orbital electron populations 1.21786 0.95591 1.01457 1.00525 1.20724 0.93381 0.93900 0.86840 0.94323 1.21564 0.92940 0.82937 0.99853 0.90600 1.46012 1.61200 1.18694 1.09008 1.20121 0.78966 0.86838 0.83940 1.90644 1.50807 1.67450 1.34512 1.21361 1.04693 0.97354 0.94360 1.30091 1.14956 1.22276 1.04567 1.07828 0.75841 0.77848 0.78134 1.30258 1.11682 1.12184 1.26390 1.93614 1.68473 1.60881 1.70589 1.93610 1.32928 1.86436 1.80630 1.21767 0.95449 1.00487 0.98224 1.22220 0.98952 0.99549 0.97291 1.20892 0.83125 0.97121 0.94295 1.44194 1.03082 1.64902 1.18824 1.19159 0.95186 1.38230 0.86231 0.91120 1.25101 0.97812 0.99303 0.97006 1.70030 1.24177 1.43252 1.16824 0.86335 0.79823 0.79922 0.80930 1.21381 1.21839 1.20385 0.91694 0.94230 0.92758 0.75273 0.87254 0.87295 0.84347 0.84340 0.85280 0.85337 0.85292 0.93190 0.91926 0.92786 0.93469 0.96358 0.89545 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.74 37.16 0.29 -2.10 16 2 C 0.16 3.04 3.20 -67.59 -0.22 2.82 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.28 2.33 -67.81 -0.16 2.12 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.70 -10.99 3.45 -53.69 -0.19 -11.18 16 7 C 0.52 7.61 7.80 -10.98 -0.09 7.52 16 8 O -0.55 -9.52 15.64 5.56 0.09 -9.43 16 9 C -0.14 -1.50 5.71 -27.89 -0.16 -1.66 16 10 C -0.59 -4.82 5.09 37.16 0.19 -4.63 16 11 S 2.42 18.81 5.36 -107.50 -0.58 18.24 16 12 C -0.66 -2.74 10.62 101.05 1.07 -1.67 16 13 O -0.94 -10.95 18.10 -57.83 -1.05 -11.99 16 14 O -0.94 -10.81 18.10 -57.83 -1.05 -11.86 16 15 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16 16 C -0.14 -2.59 5.94 -26.39 -0.16 -2.75 16 17 C 0.17 3.82 5.32 -3.48 -0.02 3.81 16 18 N -0.59 -13.16 2.64 -164.51 -0.43 -13.59 16 19 C -0.26 -6.37 8.57 -15.06 -0.13 -6.50 16 20 H 0.07 1.69 6.24 -52.49 -0.33 1.36 16 21 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 22 N -0.90 -24.85 11.22 55.49 0.62 -24.23 16 23 Si 0.90 20.68 29.58 -169.99 -5.03 15.65 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.93 6.39 -51.93 -0.33 0.60 16 30 H 0.41 6.59 7.77 -40.82 -0.32 6.27 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.14 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.14 1.00 8.10 -51.92 -0.42 0.58 16 35 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.18 6.11 -51.93 -0.32 1.86 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -34.53 361.55 -8.87 -43.40 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.10 Total: 4.71 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.39 Total: -5.16 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.00 Total: -49.00 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -2.01 Total: -33.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 18.81 SS G_CDS: -0.58 Total: 18.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.53 -8.87 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486177331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.472 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds