Wall clock time and date at job start Tue Mar 31 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70387 * 2 1 4 4 C 1.53197 * 109.58576 * 239.64462 * 2 1 3 5 5 H 1.08999 * 109.49737 * 65.59096 * 4 2 1 6 6 N 1.46495 * 109.49728 * 305.52676 * 4 2 1 7 7 C 1.34782 * 119.99824 * 155.00023 * 6 4 2 8 8 O 1.21277 * 120.00065 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00049 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47079 * 179.97438 * 9 7 6 11 11 S 1.81408 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.81400 * 101.92067 * 180.02562 * 11 10 9 13 13 O 1.42105 * 108.57653 * 294.48709 * 11 10 9 14 14 O 1.42097 * 108.57963 * 65.51491 * 11 10 9 15 15 C 1.53042 * 109.31127 * 185.57570 * 4 2 1 16 16 C 1.53040 * 109.53672 * 61.36708 * 15 4 2 17 17 C 1.53621 * 109.24402 * 298.50865 * 16 15 4 18 18 N 1.46931 * 108.54396 * 54.85734 * 17 16 15 19 19 C 1.36930 * 120.63423 * 126.36910 * 18 17 16 20 20 H 1.08002 * 120.00202 * 209.47055 * 19 18 17 21 21 C 1.38816 * 119.99659 * 29.18268 * 19 18 17 22 22 N 1.31621 * 119.99713 * 16.09724 * 21 19 18 23 23 Si 1.86802 * 119.99915 * 196.08589 * 21 19 18 24 24 H 1.48502 * 109.46819 * 90.00670 * 23 21 19 25 25 H 1.48498 * 109.46921 * 210.00635 * 23 21 19 26 26 H 1.48494 * 109.47286 * 330.00504 * 23 21 19 27 27 H 1.08997 * 109.46695 * 299.64156 * 1 2 3 28 28 H 1.08993 * 109.46980 * 59.64800 * 1 2 3 29 29 H 1.09000 * 109.47040 * 179.64414 * 1 2 3 30 30 H 0.96995 * 120.00713 * 335.00218 * 6 4 2 31 31 H 1.08995 * 109.47474 * 299.99966 * 9 7 6 32 32 H 1.09010 * 109.46981 * 59.99896 * 9 7 6 33 33 H 1.08996 * 109.47674 * 299.99868 * 10 9 7 34 34 H 1.08999 * 109.47093 * 60.00687 * 10 9 7 35 35 H 1.08996 * 109.47222 * 59.99604 * 12 11 10 36 36 H 1.08996 * 109.47341 * 180.02562 * 12 11 10 37 37 H 1.09008 * 109.47078 * 299.99943 * 12 11 10 38 38 H 1.08997 * 109.45742 * 181.38632 * 15 4 2 39 39 H 1.08996 * 109.46321 * 301.35955 * 15 4 2 40 40 H 1.09003 * 109.50032 * 58.58513 * 16 15 4 41 41 H 1.08999 * 109.49642 * 178.67888 * 16 15 4 42 42 H 1.08998 * 109.74076 * 295.12428 * 17 16 15 43 43 H 1.09001 * 109.66664 * 174.54617 * 17 16 15 44 44 H 0.97003 * 119.99345 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2455 5 1 1.7655 -0.1672 -2.1369 6 7 1.4515 -2.0679 -1.3071 7 6 1.3285 -2.6964 -2.4931 8 8 1.7084 -2.1540 -3.5091 9 6 0.7188 -4.0731 -2.5566 10 6 0.6968 -4.5546 -4.0087 11 16 -0.0377 -6.2115 -4.0853 12 6 0.0383 -6.5734 -5.8612 13 8 0.8174 -7.1178 -3.4021 14 8 -1.4022 -6.1201 -3.6994 15 6 3.5675 -0.8479 -1.1702 16 6 3.9570 -1.6657 0.0634 17 6 3.4658 -0.9420 1.3263 18 7 2.0226 -0.6996 1.1945 19 6 1.1538 -1.1127 2.1689 20 1 0.1393 -1.3782 1.9107 21 6 1.5788 -1.1959 3.4878 22 7 2.6872 -0.5922 3.8614 23 14 0.5775 -2.1643 4.7324 24 1 1.0441 -3.5740 4.7537 25 1 0.7501 -1.5653 6.0802 26 1 -0.8575 -2.1235 4.3527 27 1 -0.3632 0.5083 0.8932 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3633 -1.0276 -0.0064 30 1 1.1479 -2.5020 -0.4946 31 1 1.3118 -4.7613 -1.9543 32 1 -0.3000 -4.0375 -2.1705 33 1 0.1035 -3.8664 -4.6108 34 1 1.7154 -4.5902 -4.3952 35 1 1.0763 -6.5499 -6.1927 36 1 -0.3813 -7.5617 -6.0489 37 1 -0.5351 -5.8256 -6.4092 38 1 3.9378 -1.3448 -2.0669 39 1 4.0062 0.1473 -1.0991 40 1 3.4984 -2.6529 0.0052 41 1 5.0412 -1.7696 0.1036 42 1 3.9878 0.0089 1.4323 43 1 3.6533 -1.5638 2.2018 44 1 2.9839 -0.6501 4.7831 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486177331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:20 Heat of formation + Delta-G solvation = -116.227171 kcal Electronic energy + Delta-G solvation = -25947.688988 eV Core-core repulsion = 22219.914226 eV Total energy + Delta-G solvation = -3727.774763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14836 -39.20868 -37.95442 -37.00938 -35.61435 -34.24384 -33.84901 -33.31445 -31.10112 -30.32406 -27.96755 -26.87775 -25.95253 -23.63890 -22.38484 -21.52905 -20.28661 -19.75647 -18.55678 -18.25862 -17.28421 -17.17085 -16.93200 -16.90124 -16.44937 -16.34728 -15.71189 -15.39820 -15.17694 -14.81841 -14.49859 -14.31797 -14.12161 -13.94380 -13.86724 -13.60555 -13.36090 -13.08390 -12.99026 -12.95704 -12.87574 -12.69840 -12.45348 -12.40039 -12.31979 -12.16996 -11.98827 -11.90922 -11.66924 -11.53196 -11.36031 -11.02572 -10.80586 -10.48954 -9.89225 -8.60914 -7.81478 -5.27871 -0.89748 1.50202 1.53074 1.59219 1.69275 1.90719 2.29674 2.54471 2.83386 3.17581 3.34891 3.50965 3.60304 3.88494 3.89742 4.07451 4.08912 4.16674 4.22596 4.29321 4.40014 4.47352 4.58667 4.61841 4.67525 4.78677 4.93412 4.95968 5.00878 5.03338 5.05136 5.14202 5.23796 5.35679 5.47828 5.56299 5.66508 5.75671 5.80778 6.44972 6.69132 7.20020 7.30935 7.90371 8.43317 9.24925 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003640 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.307037 B = 7690.026851 C = 8606.591791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.029 0.971 4 C 0.143 3.857 5 H 0.082 0.918 6 N -0.702 5.702 7 C 0.518 3.482 8 O -0.577 6.577 9 C -0.145 4.145 10 C -0.588 4.588 11 S 2.434 3.566 12 C -0.635 4.635 13 O -0.984 6.984 14 O -0.982 6.982 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.178 3.822 18 N -0.597 5.597 19 C -0.248 4.248 20 H 0.081 0.919 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.957 3.043 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.267 1.267 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.409 0.591 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.060 0.940 42 H -0.006 1.006 43 H 0.054 0.946 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 -8.651 -19.708 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.047 0.953 4 C 0.036 3.964 5 H 0.100 0.900 6 N -0.352 5.352 7 C 0.305 3.695 8 O -0.458 6.458 9 C -0.185 4.185 10 C -0.717 4.717 11 S 2.621 3.379 12 C -0.788 4.788 13 O -0.981 6.981 14 O -0.980 6.980 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.053 3.947 18 N -0.321 5.321 19 C -0.378 4.378 20 H 0.099 0.901 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.787 3.213 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.191 1.191 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.246 0.754 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.012 0.988 43 H 0.072 0.928 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.865 -8.772 -19.537 21.762 hybrid contribution 0.153 0.228 1.119 1.152 sum -3.711 -8.544 -18.418 20.640 Atomic orbital electron populations 1.21708 0.94210 1.01840 1.00839 1.20857 0.94544 0.93359 0.86309 0.95336 1.21314 0.92807 0.83703 0.98552 0.89985 1.46020 1.61438 1.18238 1.09526 1.20651 0.78176 0.87752 0.82971 1.90630 1.51757 1.68326 1.35057 1.21479 1.05145 0.95131 0.96746 1.30103 1.16104 1.22572 1.02963 1.07185 0.74070 0.76850 0.79799 1.30064 1.13933 1.13555 1.21243 1.93556 1.69115 1.62066 1.73382 1.93552 1.34878 1.86790 1.82729 1.21715 0.95619 1.00427 0.97570 1.22028 0.99674 0.99103 0.95780 1.20670 0.83326 0.95689 0.95049 1.44372 1.02876 1.65460 1.19354 1.19502 0.95617 1.36181 0.86466 0.90147 1.25756 0.98955 1.00852 0.98813 1.70182 1.26053 1.45464 1.16525 0.85414 0.79181 0.78344 0.78383 1.21527 1.23136 1.19126 0.93578 0.91670 0.92315 0.75440 0.86543 0.86130 0.82911 0.83150 0.83008 0.84205 0.82905 0.92340 0.91678 0.92699 0.92117 0.98788 0.92781 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.74 71.98 0.56 -3.76 16 2 C 0.16 5.84 3.20 44.98 0.14 5.98 16 3 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.14 4.65 2.33 45.07 0.10 4.75 16 5 H 0.08 2.63 7.58 -2.39 -0.02 2.61 16 6 N -0.70 -20.87 3.45 -442.16 -1.53 -22.40 16 7 C 0.52 14.15 7.80 87.66 0.68 14.83 16 8 O -0.58 -18.37 15.64 -3.02 -0.05 -18.42 16 9 C -0.14 -2.90 5.71 29.85 0.17 -2.73 16 10 C -0.59 -8.13 5.09 71.98 0.37 -7.76 16 11 S 2.43 33.31 5.36 -56.49 -0.30 33.01 16 12 C -0.63 -2.78 10.62 113.37 1.20 -1.58 16 13 O -0.98 -22.03 18.10 -127.37 -2.30 -24.34 16 14 O -0.98 -21.53 18.10 -127.37 -2.31 -23.84 16 15 C -0.11 -3.76 5.58 30.62 0.17 -3.59 16 16 C -0.13 -4.58 5.94 30.82 0.18 -4.40 16 17 C 0.18 8.13 5.32 86.51 0.46 8.59 16 18 N -0.60 -26.89 2.64 -674.37 -1.78 -28.67 16 19 C -0.25 -12.21 8.57 84.04 0.72 -11.48 16 20 H 0.08 3.76 6.24 -2.91 -0.02 3.74 16 21 C -0.05 -2.55 4.93 84.86 0.42 -2.13 16 22 N -0.94 -53.42 11.22 21.65 0.24 -53.18 16 23 Si 0.96 43.09 29.58 68.60 2.03 45.12 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H 0.05 1.71 7.62 -2.39 -0.02 1.69 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.91 6.39 -2.39 -0.02 1.89 16 30 H 0.41 12.55 7.77 -92.71 -0.72 11.83 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.15 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.15 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.98 7.53 -2.39 -0.02 1.96 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.05 2.82 6.11 -2.39 -0.01 2.81 16 44 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -75.42 361.55 -0.54 -75.96 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.27 Total: 20.03 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.18 Total: -3.27 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.06 Total: -104.25 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -4.66 Total: -66.59 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 33.31 SS G_CDS: -0.30 Total: 33.01 kcal Total: -75.42 -0.54 -75.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486177331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.271 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds