Wall clock time and date at job start Tue Mar 31 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47410 * 2 1 4 4 S 1.81398 * 109.47505 * 180.02562 * 3 2 1 5 5 O 1.42100 * 108.58133 * 65.50995 * 4 3 2 6 6 O 1.42106 * 108.57606 * 294.48827 * 4 3 2 7 7 C 1.81393 * 101.92625 * 180.02562 * 4 3 2 8 8 C 1.50696 * 109.47592 * 179.97438 * 7 4 3 9 9 O 1.21285 * 119.99720 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00568 * 179.97438 * 8 7 4 11 11 C 1.46501 * 119.99950 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00456 * 180.02562 * 10 8 7 13 13 C 1.53007 * 109.46692 * 264.55759 * 12 10 8 14 14 H 1.08996 * 112.77956 * 317.16422 * 13 12 10 15 15 C 1.53756 * 113.55112 * 88.02022 * 13 12 10 16 16 C 1.53497 * 83.25579 * 140.98377 * 15 13 12 17 17 N 1.47066 * 87.98706 * 333.76185 * 16 15 13 18 18 C 1.36930 * 136.05656 * 207.08356 * 17 16 15 19 19 H 1.08007 * 119.99941 * 173.40746 * 18 17 16 20 20 C 1.38815 * 120.00118 * 353.13297 * 18 17 16 21 21 N 1.31621 * 119.99864 * 167.84332 * 20 18 17 22 22 Si 1.86793 * 119.99986 * 347.85187 * 20 18 17 23 23 H 1.48497 * 109.47606 * 85.48039 * 22 20 18 24 24 H 1.48501 * 109.46946 * 205.48038 * 22 20 18 25 25 H 1.48503 * 109.47000 * 325.47905 * 22 20 18 26 26 H 1.09000 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47015 * 300.00463 * 1 2 3 28 28 H 1.09003 * 109.46760 * 59.99867 * 1 2 3 29 29 H 1.09003 * 109.47015 * 239.99537 * 2 1 3 30 30 H 1.09003 * 109.46760 * 120.00133 * 2 1 3 31 31 H 1.09003 * 109.47409 * 59.99779 * 3 2 1 32 32 H 1.09003 * 109.47268 * 299.99822 * 3 2 1 33 33 H 1.09003 * 109.47560 * 59.99271 * 7 4 3 34 34 H 1.09010 * 109.47143 * 299.99859 * 7 4 3 35 35 H 1.09003 * 109.47344 * 273.30800 * 11 10 8 36 36 H 1.09008 * 109.46787 * 33.30416 * 11 10 8 37 37 H 1.08996 * 109.47525 * 153.29973 * 11 10 8 38 38 H 1.08998 * 109.47609 * 144.55677 * 12 10 8 39 39 H 1.09001 * 109.47104 * 24.55194 * 12 10 8 40 40 H 1.09010 * 114.39387 * 27.42378 * 15 13 12 41 41 H 1.08995 * 114.26986 * 254.53798 * 15 13 12 42 42 H 1.09003 * 113.46552 * 218.97990 * 16 15 13 43 43 H 1.08996 * 113.51778 * 88.55628 * 16 15 13 44 44 H 0.97002 * 120.00130 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 3.8540 1.4424 -0.0008 5 8 4.3063 0.8843 -1.2268 6 8 4.3073 0.8839 1.2248 7 6 4.2289 3.2172 0.0001 8 6 5.7228 3.4152 0.0003 9 8 6.4619 2.4536 -0.0007 10 7 6.2375 4.6608 0.0004 11 6 5.3448 5.8223 0.0009 12 6 7.6898 4.8532 -0.0001 13 6 8.1778 5.0555 1.4359 14 1 7.5313 5.7174 2.0121 15 6 8.5124 3.7421 2.1619 16 6 9.6775 4.5640 2.7302 17 7 9.6035 5.4051 1.5261 18 6 10.4765 6.1783 0.8084 19 1 10.1639 6.6197 -0.1265 20 6 11.7613 6.3994 1.2850 21 7 12.6721 6.9331 0.4989 22 14 12.1977 5.9392 3.0420 23 1 12.5881 4.5075 3.0965 24 1 13.3306 6.7793 3.5068 25 1 11.0212 6.1652 3.9196 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.8015 3.6785 0.8905 34 1 3.8008 3.6794 -0.8895 35 1 5.0760 6.0745 -1.0249 36 1 4.4425 5.5868 0.5655 37 1 5.8514 6.6698 0.4627 38 1 7.9399 5.7311 -0.5959 39 1 8.1727 3.9744 -0.4275 40 1 8.8183 2.9290 1.5034 41 1 7.7741 3.4402 2.9048 42 1 10.6075 4.0010 2.8101 43 1 9.4273 5.0965 3.6478 44 1 13.5699 7.0880 0.8321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488689537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:42 Heat of formation + Delta-G solvation = -35.647911 kcal Electronic energy + Delta-G solvation = -25362.552628 eV Core-core repulsion = 21638.272045 eV Total energy + Delta-G solvation = -3724.280584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.09916 -38.34237 -37.12739 -36.18896 -35.59401 -35.24946 -32.27404 -31.25024 -28.67243 -28.29332 -28.00183 -26.48270 -23.34224 -22.90901 -22.32024 -19.74612 -19.27238 -18.94000 -17.71210 -16.98835 -16.82454 -16.67909 -16.29345 -15.97171 -15.54445 -15.30105 -15.00244 -14.32887 -14.02855 -13.84998 -13.43999 -13.21110 -13.04287 -13.03485 -13.01832 -12.78879 -12.50698 -12.29212 -12.17210 -12.11047 -11.94225 -11.84106 -11.53951 -11.40559 -11.30179 -11.10311 -10.73301 -10.70660 -10.23834 -10.21686 -10.07062 -9.89127 -9.32946 -8.94549 -8.50845 -7.16905 -5.88068 -3.20869 -0.39682 2.38840 2.48100 2.78752 3.39329 3.46014 3.46559 3.49106 3.69958 4.05197 4.14987 4.17787 4.54928 4.57126 4.62262 4.70720 4.77505 4.85945 4.98943 5.02869 5.13711 5.22737 5.25460 5.35181 5.46714 5.48290 5.52829 5.66094 5.68198 5.80458 5.87108 6.14919 6.25343 6.34786 6.46440 6.50038 6.54372 7.08845 7.12343 7.27125 7.93961 8.36059 8.67101 9.65265 10.33488 11.28644 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.002839 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.032947 B = 9861.058866 C =10170.711642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.621 4.621 4 S 2.449 3.551 5 O -0.919 6.919 6 O -0.917 6.917 7 C -0.659 4.659 8 C 0.537 3.463 9 O -0.522 6.522 10 N -0.598 5.598 11 C 0.073 3.927 12 C 0.111 3.889 13 C 0.134 3.866 14 H 0.048 0.952 15 C -0.147 4.147 16 C 0.097 3.903 17 N -0.618 5.618 18 C -0.223 4.223 19 H 0.100 0.900 20 C 0.014 3.986 21 N -0.923 5.923 22 Si 0.888 3.112 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.270 1.270 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.492 -7.388 -0.673 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.749 4.749 4 S 2.626 3.374 5 O -0.916 6.916 6 O -0.914 6.914 7 C -0.786 4.786 8 C 0.322 3.678 9 O -0.399 6.399 10 N -0.331 5.331 11 C -0.070 4.070 12 C -0.011 4.011 13 C 0.026 3.974 14 H 0.065 0.935 15 C -0.185 4.185 16 C -0.029 4.029 17 N -0.346 5.346 18 C -0.348 4.348 19 H 0.118 0.882 20 C -0.183 4.183 21 N -0.569 5.569 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.229 1.229 25 H -0.195 1.195 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.127 -8.323 -0.831 28.387 hybrid contribution -0.352 1.136 1.062 1.594 sum -27.478 -7.187 0.231 28.404 Atomic orbital electron populations 1.21731 0.93894 1.02446 1.02305 1.21276 0.98361 0.91791 1.04219 1.30501 1.26281 1.06551 1.11575 1.07534 0.77315 0.76551 0.75950 1.93589 1.78489 1.73703 1.45788 1.93595 1.78408 1.73650 1.45729 1.30884 1.03939 1.30817 1.12995 1.19038 0.87194 0.84158 0.77396 1.90876 1.60382 1.39037 1.49613 1.47726 1.08203 1.05108 1.72051 1.21886 0.94193 0.88988 1.01935 1.21997 0.76409 1.03755 0.98977 1.22420 0.87621 0.93818 0.93495 0.93486 1.23619 0.98115 0.96941 0.99858 1.22609 0.97401 0.91738 0.91124 1.46194 1.04424 1.55872 1.28125 1.18604 0.90971 1.24118 1.01126 0.88203 1.24675 0.95713 0.99680 0.98240 1.69728 1.03295 1.48692 1.35155 0.86800 0.77441 0.77374 0.86493 1.21362 1.22904 1.19533 0.91839 0.92254 0.92262 0.90005 0.89980 0.84886 0.84921 0.82442 0.82536 0.92237 0.91330 0.89986 0.89915 0.88591 0.89109 0.92188 0.93008 0.94009 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.71 5.94 -26.73 -0.16 -0.87 16 3 C -0.62 -2.93 5.81 37.15 0.22 -2.71 16 4 S 2.45 24.29 3.96 -107.50 -0.43 23.87 16 5 O -0.92 -12.88 17.95 -59.51 -1.07 -13.95 16 6 O -0.92 -12.91 17.94 -59.54 -1.07 -13.97 16 7 C -0.66 -5.14 4.89 36.00 0.18 -4.97 16 8 C 0.54 7.58 7.69 -10.99 -0.08 7.50 16 9 O -0.52 -9.76 15.12 2.55 0.04 -9.72 16 10 N -0.60 -8.08 2.87 -181.57 -0.52 -8.60 16 11 C 0.07 0.64 10.20 59.85 0.61 1.25 16 12 C 0.11 1.95 5.41 -4.04 -0.02 1.92 16 13 C 0.13 2.62 4.32 -72.26 -0.31 2.31 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.15 -2.86 8.03 -26.08 -0.21 -3.07 16 16 C 0.10 2.15 5.59 -8.51 -0.05 2.11 16 17 N -0.62 -15.14 3.51 -176.85 -0.62 -15.76 16 18 C -0.22 -6.30 11.00 -15.06 -0.17 -6.47 16 19 H 0.10 2.93 8.06 -52.48 -0.42 2.50 16 20 C 0.01 0.41 5.50 -17.43 -0.10 0.32 16 21 N -0.92 -28.93 13.97 55.49 0.78 -28.15 16 22 Si 0.89 23.18 25.03 -169.99 -4.25 18.93 16 23 H -0.29 -7.43 6.82 56.52 0.39 -7.05 16 24 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.27 -6.74 5.75 56.52 0.33 -6.41 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.16 0.62 7.41 -51.92 -0.38 0.24 16 34 H 0.16 0.61 8.11 -51.92 -0.42 0.18 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.38 6.58 -51.92 -0.34 0.04 16 37 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 38 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 39 H 0.10 1.89 6.99 -51.93 -0.36 1.53 16 40 H 0.09 1.86 7.94 -51.92 -0.41 1.45 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.22 5.89 -51.93 -0.31 0.91 16 43 H 0.04 0.91 7.11 -51.93 -0.37 0.54 16 44 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -40.47 368.29 -8.64 -49.11 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -7.31 Total: -4.35 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 0.28 Total: -2.95 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.37 Total: -52.51 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -2.10 Total: -37.64 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.25 Total: 18.93 kcal Atomic # 16 Polarization: 24.29 SS G_CDS: -0.43 Total: 23.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.47 -8.64 -49.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488689537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.458 kcal (2) G-P(sol) polarization free energy of solvation -40.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds