Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.00074 * 2 1 4 4 C 1.54326 * 109.88117 * 238.91011 * 2 1 3 5 5 H 1.08996 * 110.72051 * 336.92651 * 4 2 1 6 6 N 1.46497 * 110.72220 * 100.02700 * 4 2 1 7 7 C 1.34780 * 120.00252 * 202.55888 * 6 4 2 8 8 O 1.21283 * 119.99620 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47018 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46807 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47121 * 180.02562 * 11 10 9 13 13 C 1.81396 * 101.92369 * 180.02562 * 12 11 10 14 14 O 1.42101 * 108.57986 * 65.51484 * 12 11 10 15 15 O 1.42103 * 108.57822 * 294.49174 * 12 11 10 16 16 C 1.55159 * 103.09920 * 218.47722 * 4 2 1 17 17 C 1.54906 * 101.58452 * 35.41510 * 16 4 2 18 18 N 1.47319 * 110.06623 * 121.17629 * 2 1 3 19 19 C 1.36932 * 125.61397 * 298.32476 * 18 2 1 20 20 H 1.08005 * 120.00010 * 341.26100 * 19 18 2 21 21 C 1.38809 * 120.00391 * 161.26539 * 19 18 2 22 22 N 1.31620 * 120.00179 * 157.58208 * 21 19 18 23 23 Si 1.86800 * 119.99900 * 337.58732 * 21 19 18 24 24 H 1.48504 * 109.47231 * 84.53500 * 23 21 19 25 25 H 1.48499 * 109.47573 * 204.53945 * 23 21 19 26 26 H 1.48503 * 109.47048 * 324.54070 * 23 21 19 27 27 H 1.08997 * 109.47544 * 181.08853 * 1 2 3 28 28 H 1.09004 * 109.47165 * 301.09608 * 1 2 3 29 29 H 1.09006 * 109.47054 * 61.08986 * 1 2 3 30 30 H 0.97005 * 119.99948 * 22.55782 * 6 4 2 31 31 H 1.09003 * 109.47085 * 59.99815 * 9 7 6 32 32 H 1.09005 * 109.46882 * 300.00240 * 9 7 6 33 33 H 1.09003 * 109.47149 * 60.00092 * 10 9 7 34 34 H 1.08997 * 109.47428 * 300.00237 * 10 9 7 35 35 H 1.09003 * 109.46941 * 60.00270 * 11 10 9 36 36 H 1.08997 * 109.47570 * 300.00456 * 11 10 9 37 37 H 1.09001 * 109.46921 * 300.00045 * 13 12 11 38 38 H 1.09004 * 109.47320 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.47126 * 59.99682 * 13 12 11 40 40 H 1.09002 * 110.99981 * 153.48852 * 16 4 2 41 41 H 1.09002 * 111.00581 * 277.33337 * 16 4 2 42 42 H 1.08997 * 110.36626 * 81.82186 * 17 16 4 43 43 H 1.09000 * 110.37208 * 204.04509 * 17 16 4 44 44 H 0.97002 * 119.99586 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3039 -1.4435 -1.6202 6 7 2.4554 0.1962 -2.2875 7 6 2.5054 -0.2023 -3.5741 8 8 2.2183 -1.3437 -3.8669 9 6 2.9170 0.7706 -4.6489 10 6 2.8913 0.0695 -6.0085 11 6 3.3085 1.0574 -7.0997 12 16 3.2773 0.2264 -8.7118 13 6 3.7958 1.5576 -9.8298 14 8 1.9337 -0.1227 -9.0153 15 8 4.2755 -0.7849 -8.7193 16 6 3.2869 -1.5176 -0.6959 17 6 2.8161 -1.8832 0.7339 18 7 2.0354 -0.7163 1.1839 19 6 1.8129 -0.3595 2.4870 20 1 1.4966 0.6454 2.7253 21 6 1.9938 -1.2891 3.5019 22 7 2.2181 -0.8833 4.7337 23 14 1.9191 -3.1159 3.1193 24 1 3.2476 -3.5763 2.6413 25 1 1.5482 -3.8642 4.3472 26 1 0.9021 -3.3597 2.0649 27 1 -0.3634 -1.0274 0.0195 28 1 -0.3634 0.5308 0.8800 29 1 -0.3633 0.4968 -0.8996 30 1 2.6846 1.1092 -2.0533 31 1 3.9253 1.1315 -4.4455 32 1 2.2252 1.6129 -4.6608 33 1 1.8832 -0.2917 -6.2120 34 1 3.5833 -0.7726 -5.9963 35 1 4.3165 1.4190 -6.8964 36 1 2.6162 1.8992 -7.1118 37 1 3.0896 2.3851 -9.7614 38 1 3.8191 1.1839 -10.8535 39 1 4.7896 1.9037 -9.5462 40 1 3.4810 -2.4143 -1.2845 41 1 4.1664 -0.8744 -0.6653 42 1 2.1879 -2.7736 0.7104 43 1 3.6742 -2.0422 1.3869 44 1 2.3449 -1.5330 5.4428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489294415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -86.285462 kcal Electronic energy + Delta-G solvation = -24706.962252 eV Core-core repulsion = 20980.485860 eV Total energy + Delta-G solvation = -3726.476393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.95348 -37.98604 -37.36786 -36.42127 -34.99556 -34.15944 -32.15497 -30.73000 -30.25737 -29.72076 -28.37147 -24.98100 -23.94135 -22.76103 -21.13797 -20.38841 -19.60167 -19.23743 -17.42557 -16.96644 -16.81753 -16.76397 -16.23524 -15.99281 -15.80494 -15.03087 -14.55803 -14.44153 -13.90823 -13.81540 -13.72244 -13.46534 -13.11998 -12.99248 -12.84537 -12.61014 -12.45292 -12.36678 -12.28410 -12.14919 -11.85297 -11.59928 -11.47561 -11.31055 -11.21976 -10.94741 -10.90252 -10.79962 -10.48021 -10.15514 -10.00926 -9.77117 -9.45201 -8.87117 -8.67825 -7.10775 -5.96887 -3.27911 -0.48692 2.29590 2.63527 3.05786 3.30627 3.35373 3.49417 3.51668 3.53735 4.12326 4.16553 4.26813 4.50178 4.50801 4.53793 4.78946 4.86072 4.98223 5.03757 5.11722 5.14001 5.21956 5.26032 5.31102 5.55241 5.59195 5.73400 5.83465 5.92758 6.01678 6.15153 6.28349 6.38129 6.43935 6.61108 6.71498 6.77552 6.94967 7.56031 7.67069 8.24967 8.29011 8.79743 9.66195 10.13552 11.18910 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.002251 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.660530 B =12435.212435 C =12658.669854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.096 0.904 6 N -0.716 5.716 7 C 0.509 3.491 8 O -0.541 6.541 9 C -0.133 4.133 10 C -0.098 4.098 11 C -0.612 4.612 12 S 2.421 3.579 13 C -0.658 4.658 14 O -0.937 6.937 15 O -0.937 6.937 16 C -0.140 4.140 17 C 0.111 3.889 18 N -0.601 5.601 19 C -0.239 4.239 20 H 0.092 0.908 21 C 0.023 3.977 22 N -0.908 5.908 23 Si 0.881 3.119 24 H -0.285 1.285 25 H -0.303 1.303 26 H -0.276 1.276 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.400 0.600 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 9.623 -27.083 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.028 3.972 5 H 0.114 0.886 6 N -0.367 5.367 7 C 0.295 3.705 8 O -0.418 6.418 9 C -0.174 4.174 10 C -0.137 4.137 11 C -0.741 4.741 12 S 2.603 3.397 13 C -0.807 4.807 14 O -0.934 6.934 15 O -0.934 6.934 16 C -0.179 4.179 17 C -0.014 4.014 18 N -0.328 5.328 19 C -0.366 4.366 20 H 0.110 0.890 21 C -0.176 4.176 22 N -0.551 5.551 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.202 1.202 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.235 0.765 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.639 7.919 -27.237 28.597 hybrid contribution 0.263 0.343 0.279 0.514 sum 3.902 8.262 -26.958 28.464 Atomic orbital electron populations 1.22197 0.97161 1.01635 1.00484 1.21142 0.92842 0.95213 0.86018 0.93604 1.22143 0.97061 0.91137 0.86869 0.88581 1.46053 1.68994 1.15116 1.06533 1.20579 0.77504 0.88949 0.83496 1.90727 1.48694 1.20090 1.82270 1.21615 1.04082 0.98720 0.92986 1.21061 1.04490 0.96635 0.91492 1.30368 1.11220 1.12426 1.20047 1.07854 0.75642 0.77712 0.78494 1.30301 1.12729 1.20228 1.17484 1.93617 1.35380 1.81403 1.83036 1.93618 1.60928 1.52975 1.85904 1.23124 0.97590 1.00136 0.97076 1.21952 0.95296 0.91072 0.93074 1.44905 1.57559 1.28820 1.01470 1.18568 1.42702 0.96685 0.78602 0.89001 1.24995 1.00082 0.97694 0.94837 1.69834 1.50659 1.33958 1.00678 0.87010 0.78296 0.87372 0.76171 1.21189 1.23052 1.20160 0.93008 0.91989 0.94052 0.76533 0.88442 0.88442 0.89232 0.89219 0.84787 0.84801 0.85364 0.85277 0.85353 0.91233 0.90983 0.95512 0.91928 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.15 37.15 0.34 -2.41 16 2 C 0.16 2.86 3.49 -66.79 -0.23 2.63 16 3 H 0.05 0.81 7.70 -51.93 -0.40 0.41 16 4 C 0.13 2.17 2.79 -66.10 -0.18 1.98 16 5 H 0.10 1.71 7.33 -51.93 -0.38 1.33 16 6 N -0.72 -8.85 5.19 -52.03 -0.27 -9.12 16 7 C 0.51 6.34 7.83 -10.98 -0.09 6.25 16 8 O -0.54 -9.09 15.67 5.55 0.09 -9.00 16 9 C -0.13 -0.99 5.70 -27.88 -0.16 -1.14 16 10 C -0.10 -0.79 4.51 -26.73 -0.12 -0.91 16 11 C -0.61 -2.29 5.81 37.16 0.22 -2.08 16 12 S 2.42 14.08 5.36 -107.50 -0.58 13.51 16 13 C -0.66 -1.27 10.62 101.05 1.07 -0.19 16 14 O -0.94 -9.54 18.10 -57.83 -1.05 -10.59 16 15 O -0.94 -9.59 18.10 -57.83 -1.05 -10.64 16 16 C -0.14 -2.44 6.77 -24.58 -0.17 -2.60 16 17 C 0.11 2.42 4.69 -2.53 -0.01 2.41 16 18 N -0.60 -13.99 2.95 -162.35 -0.48 -14.47 16 19 C -0.24 -6.54 10.21 -15.06 -0.15 -6.70 16 20 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 21 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 22 N -0.91 -27.63 13.97 55.49 0.78 -26.85 16 23 Si 0.88 22.61 24.27 -169.99 -4.13 18.48 16 24 H -0.28 -7.06 6.49 56.52 0.37 -6.70 16 25 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 26 H -0.28 -7.03 6.66 56.52 0.38 -6.66 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.40 3.81 8.34 -40.82 -0.34 3.47 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 36 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.13 0.01 8.14 -51.92 -0.42 -0.41 16 38 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 39 H 0.13 0.02 8.14 -51.92 -0.42 -0.41 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 43 H 0.06 1.44 6.64 -51.93 -0.34 1.10 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -39.57 366.62 -8.02 -47.59 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.28 Total: -2.22 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 0.42 Total: -2.21 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.03 Total: -50.44 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -2.01 Total: -30.23 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Atomic # 16 Polarization: 14.08 SS G_CDS: -0.58 Total: 13.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.57 -8.02 -47.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489294415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.698 kcal (2) G-P(sol) polarization free energy of solvation -39.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds