Wall clock time and date at job start Tue Mar 31 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47227 * 2 1 4 4 S 1.81400 * 109.47104 * 119.99629 * 2 1 3 5 5 O 1.42106 * 108.57747 * 305.51511 * 4 2 1 6 6 O 1.42104 * 108.57936 * 174.49240 * 4 2 1 7 7 C 1.81395 * 101.92191 * 60.00426 * 4 2 1 8 8 C 1.50698 * 109.47279 * 180.02562 * 7 4 2 9 9 O 1.21280 * 120.00364 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99765 * 179.97438 * 8 7 4 11 11 C 1.47015 * 125.64929 * 359.97431 * 10 8 7 12 12 C 1.54325 * 107.27065 * 178.96227 * 11 10 8 13 13 C 1.55157 * 102.94374 * 337.80787 * 12 11 10 14 14 H 1.09000 * 111.00346 * 277.43176 * 13 12 11 15 15 C 1.52996 * 111.00814 * 153.57356 * 13 12 11 16 16 N 1.46503 * 109.46859 * 66.45811 * 15 13 12 17 17 C 1.36934 * 120.00182 * 180.02562 * 16 15 13 18 18 H 1.08010 * 119.99738 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00309 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00330 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47095 * 60.00004 * 21 19 17 23 23 H 1.48496 * 109.47680 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47305 * 300.00585 * 21 19 17 25 25 C 1.47425 * 125.64189 * 179.97438 * 10 8 7 26 26 H 1.09003 * 109.46668 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47446 * 300.00568 * 1 2 3 28 28 H 1.09009 * 109.46875 * 60.00799 * 1 2 3 29 29 H 1.08994 * 109.47762 * 240.00145 * 2 1 3 30 30 H 1.08993 * 109.47604 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46824 * 300.00117 * 3 2 1 32 32 H 1.09001 * 109.46987 * 59.99349 * 3 2 1 33 33 H 1.09006 * 109.47122 * 59.99912 * 7 4 2 34 34 H 1.09003 * 109.46864 * 299.99982 * 7 4 2 35 35 H 1.09000 * 109.88350 * 59.54436 * 11 10 8 36 36 H 1.08998 * 109.88602 * 298.38102 * 11 10 8 37 37 H 1.08996 * 110.72124 * 219.44887 * 12 11 10 38 38 H 1.08999 * 110.87305 * 96.24314 * 12 11 10 39 39 H 1.08996 * 109.47362 * 186.45309 * 15 13 12 40 40 H 1.08999 * 109.47432 * 306.46119 * 15 13 12 41 41 H 0.97007 * 120.00042 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00521 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36633 * 85.27695 * 25 10 8 44 44 H 1.08996 * 110.37033 * 322.94075 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8550 1.4812 5 8 1.5478 -0.2493 2.6249 6 8 3.5496 -0.9570 1.3992 7 6 1.4230 -2.5108 1.2748 8 6 1.8271 -3.3798 2.4378 9 8 2.5267 -2.9269 3.3189 10 7 1.4109 -4.6603 2.4988 11 6 0.5631 -5.3340 1.5044 12 6 0.3703 -6.7901 1.9779 13 6 1.5838 -7.0132 2.9186 14 1 2.4765 -7.2732 2.3497 15 6 1.2746 -8.0821 3.9687 16 7 1.1116 -9.3806 3.3102 17 6 0.8273 -10.4946 4.0540 18 1 0.7229 -10.4159 5.1262 19 6 0.6723 -11.7249 3.4301 20 7 0.7991 -11.8208 2.1236 21 14 0.2838 -13.2444 4.4447 22 1 -0.9989 -13.0436 5.1656 23 1 0.1691 -14.4225 3.5480 24 1 1.3730 -13.4752 5.4276 25 6 1.7307 -5.6172 3.5737 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.7895 -2.9508 0.3473 34 1 0.3361 -2.4369 1.2373 35 1 1.0531 -5.3226 0.5308 36 1 -0.4032 -4.8337 1.4412 37 1 0.4056 -7.4781 1.1333 38 1 -0.5665 -6.8999 2.5243 39 1 2.0957 -8.1378 4.6833 40 1 0.3545 -7.8221 4.4919 41 1 1.2043 -9.4512 2.3471 42 1 0.6911 -12.6805 1.6876 43 1 1.0267 -5.5099 4.3989 44 1 2.7521 -5.4678 3.9232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491855832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:30 Heat of formation + Delta-G solvation = -95.041902 kcal Electronic energy + Delta-G solvation = -24829.363735 eV Core-core repulsion = 21102.507635 eV Total energy + Delta-G solvation = -3726.856100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.27655 -37.90374 -37.27630 -36.26191 -35.58367 -34.78945 -32.56145 -31.06207 -30.09908 -29.00796 -27.81771 -25.37827 -23.40083 -22.98874 -22.47719 -20.13663 -19.75552 -18.94706 -17.92478 -17.19771 -17.08631 -16.69732 -16.44288 -15.98222 -15.48437 -14.90782 -14.80530 -14.44282 -13.89290 -13.84888 -13.65701 -13.61236 -13.26389 -13.15842 -12.90289 -12.83987 -12.57930 -12.50354 -12.29694 -12.22074 -12.01781 -11.97251 -11.75208 -11.41447 -11.24082 -10.88734 -10.75019 -10.64873 -10.59777 -10.47191 -10.37682 -10.09080 -9.73845 -8.92197 -8.84888 -6.98126 -5.81528 -3.10403 -0.48796 2.21520 2.35997 2.60434 3.38071 3.41717 3.46312 3.47088 3.57361 3.95312 3.99720 4.04519 4.47201 4.51167 4.52616 4.60488 4.65638 4.76340 4.90389 4.96823 4.98162 5.05919 5.18728 5.19298 5.32852 5.45946 5.47701 5.49851 5.54930 5.79763 5.90652 5.92961 6.02831 6.04228 6.31003 6.32770 6.65978 6.77230 7.21472 7.65680 7.71919 8.37341 9.48842 10.04931 10.39918 11.41269 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040666 B = 0.002234 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.367603 B =12531.215724 C =12838.711954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.582 4.582 3 C -0.143 4.143 4 S 2.450 3.550 5 O -0.917 6.917 6 O -0.920 6.920 7 C -0.657 4.657 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.604 5.604 11 C 0.094 3.906 12 C -0.121 4.121 13 C -0.106 4.106 14 H 0.086 0.914 15 C 0.164 3.836 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.110 3.890 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 25.051 -9.298 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.691 4.691 3 C -0.201 4.201 4 S 2.626 3.374 5 O -0.914 6.914 6 O -0.917 6.917 7 C -0.784 4.784 8 C 0.341 3.659 9 O -0.411 6.411 10 N -0.337 5.337 11 C -0.028 4.028 12 C -0.159 4.159 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.036 3.964 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.013 4.013 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.563 25.538 -8.028 26.816 hybrid contribution -0.825 -1.432 -0.787 1.830 sum -2.388 24.106 -8.815 25.778 Atomic orbital electron populations 1.21767 0.89901 1.03683 1.05269 1.30179 1.07103 1.10289 1.21541 1.21640 1.02263 0.91436 1.04791 1.07701 0.76060 0.76508 0.77114 1.93571 1.79232 1.73586 1.44982 1.93584 1.26416 1.85193 1.86464 1.30888 1.15918 1.23963 1.07665 1.18647 0.80267 0.81429 0.85551 1.90868 1.38118 1.72337 1.39812 1.48364 1.50304 1.09934 1.25111 1.22258 0.94129 0.94498 0.91931 1.22655 0.99496 0.93062 1.00686 1.22589 0.98776 0.93460 0.97741 0.89544 1.20549 0.97803 0.85241 0.92813 1.42288 1.85887 1.02295 1.07048 1.19183 1.40198 0.86528 0.91241 0.91173 1.24737 1.02722 0.97743 0.95744 1.69641 1.56711 1.24459 1.07493 0.86248 0.78205 0.82673 0.78931 1.21254 1.21698 1.21233 1.22401 1.02194 0.86995 0.89669 0.91192 0.90130 0.90003 0.84417 0.90655 0.89849 0.90626 0.82291 0.82273 0.91130 0.91191 0.89207 0.89921 0.95838 0.95875 0.78241 0.93447 0.90568 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 8.94 37.15 0.33 -0.22 16 2 C -0.58 -2.98 3.31 -26.73 -0.09 -3.07 16 3 C -0.14 -0.76 9.20 37.16 0.34 -0.42 16 4 S 2.45 24.66 3.48 -107.50 -0.37 24.29 16 5 O -0.92 -12.46 17.76 -59.53 -1.06 -13.52 16 6 O -0.92 -12.88 17.95 -59.52 -1.07 -13.95 16 7 C -0.66 -5.29 5.03 36.00 0.18 -5.11 16 8 C 0.55 7.54 7.87 -10.98 -0.09 7.46 16 9 O -0.53 -9.52 15.88 2.57 0.04 -9.47 16 10 N -0.60 -7.69 3.33 -170.53 -0.57 -8.26 16 11 C 0.09 0.95 6.49 -3.07 -0.02 0.93 16 12 C -0.12 -1.55 6.13 -24.90 -0.15 -1.70 16 13 C -0.11 -1.58 3.10 -88.48 -0.27 -1.86 16 14 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.10 5.71 -4.04 -0.02 3.08 16 16 N -0.73 -17.63 5.45 -59.91 -0.33 -17.96 16 17 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.11 1.53 6.38 -2.54 -0.02 1.51 16 26 H 0.07 0.13 6.56 -51.93 -0.34 -0.22 16 27 H 0.08 0.34 8.06 -51.93 -0.42 -0.07 16 28 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.16 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.16 0.70 6.87 -51.92 -0.36 0.34 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 41 H 0.38 9.61 7.53 -40.82 -0.31 9.30 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 44 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -38.09 372.33 -9.38 -47.48 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.29 Total: 2.13 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.05 Total: -6.59 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.17 Total: -53.00 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -2.08 Total: -36.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 24.66 SS G_CDS: -0.37 Total: 24.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.09 -9.38 -47.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491855832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.564 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds