Wall clock time and date at job start Tue Mar 31 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47486 * 2 1 4 4 S 1.81406 * 109.46675 * 119.99732 * 2 1 3 5 5 O 1.42101 * 108.57688 * 70.51588 * 4 2 1 6 6 O 1.42095 * 108.57932 * 299.48478 * 4 2 1 7 7 C 1.81405 * 101.92116 * 184.99871 * 4 2 1 8 8 C 1.50696 * 109.46941 * 180.02562 * 7 4 2 9 9 O 1.21273 * 120.00223 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99778 * 180.02562 * 8 7 4 11 11 C 1.47027 * 125.64647 * 359.97438 * 10 8 7 12 12 C 1.54327 * 107.26687 * 181.10593 * 11 10 8 13 13 C 1.55156 * 102.94551 * 22.19190 * 12 11 10 14 14 H 1.08997 * 110.99929 * 82.60530 * 13 12 11 15 15 C 1.52993 * 111.00306 * 206.42241 * 13 12 11 16 16 N 1.46496 * 109.47551 * 293.54458 * 15 13 12 17 17 C 1.36934 * 120.00548 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47426 * 125.64821 * 180.02562 * 10 8 7 26 26 H 1.09004 * 109.47148 * 300.00744 * 1 2 3 27 27 H 1.09006 * 109.46944 * 59.99999 * 1 2 3 28 28 H 1.08993 * 109.47626 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47615 * 239.99509 * 2 1 3 30 30 H 1.09001 * 109.46581 * 299.99848 * 3 2 1 31 31 H 1.09000 * 109.47067 * 59.99628 * 3 2 1 32 32 H 1.08996 * 109.47176 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46740 * 60.00169 * 7 4 2 34 34 H 1.08995 * 109.46888 * 300.00036 * 7 4 2 35 35 H 1.08996 * 109.88420 * 61.68889 * 11 10 8 36 36 H 1.08995 * 110.01059 * 300.59237 * 11 10 8 37 37 H 1.09003 * 110.71758 * 263.83004 * 12 11 10 38 38 H 1.08997 * 110.71651 * 140.55882 * 12 11 10 39 39 H 1.09004 * 109.46862 * 173.54656 * 15 13 12 40 40 H 1.09004 * 109.46998 * 53.55134 * 15 13 12 41 41 H 0.96999 * 119.99694 * 0.02562 * 16 15 13 42 42 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36612 * 36.98721 * 25 10 8 44 44 H 1.09002 * 110.36610 * 274.66355 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1345 -0.8551 1.4813 5 8 1.8618 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6285 7 6 3.9265 -0.6032 1.3542 8 6 4.6103 -1.2601 2.5254 9 8 3.9536 -1.8406 3.3635 10 7 5.9518 -1.2016 2.6420 11 6 6.8652 -0.5336 1.7033 12 6 8.3003 -0.7510 2.2275 13 6 8.1560 -2.0088 3.1243 14 1 8.1926 -2.9203 2.5277 15 6 9.2264 -2.0287 4.2173 16 7 10.5465 -2.1974 3.6050 17 6 11.6657 -2.2438 4.3926 18 1 11.5751 -2.1565 5.4653 19 6 12.9166 -2.4031 3.8124 20 7 13.9924 -2.4483 4.5695 21 14 13.0732 -2.5549 1.9572 22 1 12.9852 -3.9854 1.5683 23 1 11.9763 -1.7962 1.3041 24 1 14.3824 -2.0039 1.5242 25 6 6.7464 -1.7979 3.7313 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4424 0.0005 33 1 4.1444 0.4648 1.3581 34 1 4.2906 -1.0450 0.4268 35 1 6.6422 0.5327 1.6646 36 1 6.7634 -0.9698 0.7097 37 1 8.6302 0.1058 2.8150 38 1 8.9871 -0.9420 1.4029 39 1 9.0337 -2.8569 4.8994 40 1 9.1992 -1.0894 4.7696 41 1 10.6278 -2.2755 2.6416 42 1 14.8664 -2.5600 4.1640 43 1 6.3174 -2.7527 4.0351 44 1 6.7972 -1.1165 4.5806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491855833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:32 Heat of formation + Delta-G solvation = -90.326300 kcal Electronic energy + Delta-G solvation = -24926.789806 eV Core-core repulsion = 21200.138189 eV Total energy + Delta-G solvation = -3726.651617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.36715 -38.02236 -37.32500 -36.30693 -35.64354 -34.98410 -32.60296 -31.24749 -30.33776 -29.29863 -27.86572 -25.60812 -23.44345 -23.07159 -22.14679 -20.33425 -19.83768 -18.98809 -18.04273 -17.62103 -17.19931 -16.77460 -16.49129 -16.03642 -15.56991 -14.95083 -14.85312 -14.51488 -13.98783 -13.91204 -13.76039 -13.68670 -13.48390 -13.16279 -12.98565 -12.93838 -12.62954 -12.52802 -12.34287 -12.26906 -12.06538 -12.01508 -11.92919 -11.70248 -11.44103 -11.02121 -10.79830 -10.74069 -10.69192 -10.60594 -10.41792 -10.19187 -9.64343 -8.96806 -8.93276 -7.30037 -5.81687 -3.18118 -0.53588 2.14545 2.30872 2.52420 3.29652 3.32417 3.33731 3.39997 3.52922 3.89006 3.93553 3.99260 4.41416 4.46883 4.47988 4.51816 4.53719 4.62321 4.82470 4.85632 4.92084 5.01459 5.05793 5.14847 5.21683 5.38361 5.40456 5.44426 5.48575 5.66134 5.69983 5.76283 5.80807 5.90683 6.05769 6.18326 6.55679 6.64346 7.12468 7.64489 7.93830 8.36887 9.15306 9.87189 10.06502 11.36610 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.002435 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.721675 B =11494.958301 C =11889.469097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.582 4.582 3 C -0.149 4.149 4 S 2.450 3.550 5 O -0.920 6.920 6 O -0.916 6.916 7 C -0.658 4.658 8 C 0.556 3.444 9 O -0.531 6.531 10 N -0.605 5.605 11 C 0.095 3.905 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.086 0.914 15 C 0.168 3.832 16 N -0.754 5.754 17 C -0.245 4.245 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.291 1.291 25 C 0.111 3.889 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.575 9.250 -14.489 30.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.691 4.691 3 C -0.207 4.207 4 S 2.626 3.374 5 O -0.917 6.917 6 O -0.913 6.913 7 C -0.785 4.785 8 C 0.342 3.658 9 O -0.409 6.409 10 N -0.338 5.338 11 C -0.028 4.028 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.104 0.896 15 C 0.041 3.959 16 N -0.400 5.400 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.217 1.217 25 C -0.012 4.012 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.293 8.503 -13.196 30.623 hybrid contribution 0.989 0.383 -2.263 2.499 sum -25.304 8.886 -15.459 30.955 Atomic orbital electron populations 1.21638 0.89504 1.04101 1.04885 1.30187 1.07525 1.09881 1.21499 1.21793 1.01477 0.92142 1.05313 1.07701 0.76463 0.76089 0.77103 1.93586 1.82027 1.29646 1.86396 1.93573 1.77076 1.75635 1.45009 1.30907 1.28423 1.11932 1.07240 1.18651 0.81637 0.80296 0.85254 1.90873 1.63334 1.44088 1.42601 1.48348 1.04669 1.54239 1.26567 1.22229 0.90322 0.97233 0.92990 1.22699 0.93822 0.99242 1.00495 1.22648 0.93735 0.98491 0.98174 0.89557 1.20524 0.83668 0.99044 0.92689 1.42641 1.02171 1.90045 1.05138 1.19050 0.83871 1.42429 0.92149 0.89146 1.24688 0.95332 1.01944 0.97231 1.69704 0.97659 1.56815 1.33893 0.86530 0.76883 0.77872 0.87057 1.21094 1.20426 1.21739 1.22382 0.89982 0.99372 0.89418 0.90456 0.89851 0.90783 0.84393 0.89958 0.90187 0.91134 0.82219 0.82332 0.91068 0.91167 0.89601 0.89658 0.94923 0.95026 0.80674 0.93009 0.89699 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.58 -2.75 3.35 -26.73 -0.09 -2.84 16 3 C -0.15 -0.48 8.90 37.16 0.33 -0.14 16 4 S 2.45 23.54 3.50 -107.50 -0.38 23.16 16 5 O -0.92 -12.48 17.95 -59.54 -1.07 -13.55 16 6 O -0.92 -12.07 17.91 -59.52 -1.07 -13.14 16 7 C -0.66 -4.90 4.87 36.00 0.18 -4.73 16 8 C 0.56 7.17 7.87 -10.98 -0.09 7.09 16 9 O -0.53 -9.16 15.88 2.56 0.04 -9.12 16 10 N -0.61 -7.21 3.33 -170.52 -0.57 -7.77 16 11 C 0.09 0.86 6.49 -3.06 -0.02 0.84 16 12 C -0.12 -1.45 6.13 -24.89 -0.15 -1.60 16 13 C -0.11 -1.52 3.10 -88.47 -0.27 -1.80 16 14 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.17 3.00 5.71 -4.05 -0.02 2.98 16 16 N -0.75 -16.93 5.26 -59.91 -0.32 -17.25 16 17 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 18 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 21 Si 0.89 21.35 27.74 -169.99 -4.71 16.64 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.11 1.44 6.38 -2.53 -0.02 1.42 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.08 6.39 -51.93 -0.33 -0.25 16 33 H 0.16 0.61 6.77 -51.92 -0.35 0.26 16 34 H 0.16 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.04 8.01 -51.93 -0.42 0.62 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.36 7.78 5.39 -40.82 -0.22 7.56 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 44 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -39.16 369.03 -9.04 -48.19 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.24 Total: 1.42 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.07 Total: -6.04 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.13 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.09 Total: -35.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: 23.54 SS G_CDS: -0.38 Total: 23.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.16 -9.04 -48.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491855833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.132 kcal (2) G-P(sol) polarization free energy of solvation -39.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds