Wall clock time and date at job start Tue Mar 31 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 S 1.81403 * 109.47069 * 180.02562 * 3 2 1 5 5 O 1.42097 * 108.57678 * 65.51252 * 4 3 2 6 6 O 1.42101 * 108.57787 * 294.49102 * 4 3 2 7 7 C 1.81396 * 101.92277 * 179.97438 * 4 3 2 8 8 C 1.50703 * 109.47174 * 179.97438 * 7 4 3 9 9 O 1.21277 * 119.99734 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99698 * 180.02562 * 8 7 4 11 11 C 1.47015 * 125.65008 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.27065 * 178.92146 * 11 10 8 13 13 C 1.55157 * 102.94374 * 337.80787 * 12 11 10 14 14 H 1.09000 * 111.00346 * 277.43176 * 13 12 11 15 15 C 1.52996 * 111.00814 * 153.57356 * 13 12 11 16 16 N 1.46503 * 109.46859 * 66.45811 * 15 13 12 17 17 C 1.36934 * 120.00182 * 180.02562 * 16 15 13 18 18 H 1.08010 * 119.99738 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00309 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00330 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47095 * 60.00004 * 21 19 17 23 23 H 1.48496 * 109.47680 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47305 * 300.00585 * 21 19 17 25 25 C 1.47425 * 125.64110 * 180.02562 * 10 8 7 26 26 H 1.08995 * 109.47554 * 60.00086 * 1 2 3 27 27 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47142 * 299.99587 * 1 2 3 29 29 H 1.08999 * 109.46980 * 240.00042 * 2 1 3 30 30 H 1.09001 * 109.47032 * 120.00382 * 2 1 3 31 31 H 1.08999 * 109.47238 * 60.00200 * 3 2 1 32 32 H 1.09001 * 109.47558 * 300.00060 * 3 2 1 33 33 H 1.09007 * 109.46776 * 60.00215 * 7 4 3 34 34 H 1.08992 * 109.47465 * 300.00372 * 7 4 3 35 35 H 1.09000 * 109.88350 * 59.50355 * 11 10 8 36 36 H 1.08998 * 109.88602 * 298.34021 * 11 10 8 37 37 H 1.08996 * 110.72124 * 219.44887 * 12 11 10 38 38 H 1.08999 * 110.87305 * 96.24314 * 12 11 10 39 39 H 1.08996 * 109.47362 * 186.45309 * 15 13 12 40 40 H 1.08999 * 109.47432 * 306.46119 * 15 13 12 41 41 H 0.97007 * 120.00042 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00521 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36633 * 85.31776 * 25 10 8 44 44 H 1.08996 * 110.37033 * 322.98156 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3061 0.8844 -1.2268 6 8 4.3072 0.8840 1.2247 7 6 4.2287 3.2174 -0.0015 8 6 5.7226 3.4154 -0.0015 9 8 6.4617 2.4538 -0.0016 10 7 6.2373 4.6610 -0.0015 11 6 5.4603 5.9091 -0.0008 12 6 6.4690 7.0767 0.0267 13 6 7.7468 6.4185 0.6111 14 1 7.7022 6.3774 1.6994 15 6 9.0050 7.1525 0.1432 16 7 9.0250 8.5009 0.7156 17 6 10.0627 9.3488 0.4342 18 1 10.8663 9.0236 -0.2101 19 6 10.0815 10.6266 0.9761 20 7 9.1020 11.0231 1.7608 21 14 11.4967 11.7836 0.5917 22 1 11.5633 12.0144 -0.8738 23 1 11.2815 13.0775 1.2878 24 1 12.7710 11.1783 1.0557 25 6 7.6726 4.9975 -0.0020 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.8013 3.6792 0.8887 34 1 3.8006 3.6788 -0.8913 35 1 4.8232 5.9487 0.8827 36 1 4.8509 5.9669 -0.9027 37 1 6.1154 7.8766 0.6772 38 1 6.6548 7.4533 -0.9792 39 1 9.8884 6.6051 0.4719 40 1 9.0031 7.2196 -0.9448 41 1 8.3027 8.7933 1.2933 42 1 9.1152 11.9159 2.1399 43 1 8.0605 5.0031 -1.0207 44 1 8.2285 4.2897 0.6127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491857492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:36 Heat of formation + Delta-G solvation = -97.969278 kcal Electronic energy + Delta-G solvation = -24467.412058 eV Core-core repulsion = 20740.429017 eV Total energy + Delta-G solvation = -3726.983041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.27924 -37.90666 -37.23468 -36.27648 -35.35415 -34.79423 -32.56795 -31.04034 -30.08358 -28.99834 -28.19229 -25.39326 -23.32146 -22.53059 -22.38083 -20.13963 -19.78105 -19.03464 -17.84197 -17.15466 -17.01517 -16.74370 -16.45831 -16.14448 -15.56473 -15.14490 -14.79765 -14.43936 -14.07825 -13.88712 -13.62025 -13.28015 -13.16089 -13.10474 -13.08762 -12.84057 -12.58090 -12.50049 -12.28344 -12.21839 -11.98704 -11.75500 -11.45180 -11.44006 -11.24787 -10.88899 -10.84473 -10.73255 -10.60149 -10.47527 -10.38095 -10.09192 -9.73934 -8.92312 -8.85282 -6.98197 -5.81634 -3.10501 -0.49557 2.21248 2.37818 2.60019 3.36611 3.41634 3.46242 3.47010 3.61519 3.96077 4.05446 4.11354 4.47226 4.51325 4.57470 4.60294 4.67543 4.76924 4.80604 4.97139 4.98703 5.09210 5.18990 5.32511 5.42369 5.44065 5.49560 5.54709 5.62869 5.79415 5.90326 5.92660 6.02513 6.03983 6.30790 6.32502 6.65805 6.77033 7.21157 7.65602 7.71531 8.37215 9.48740 10.04828 10.39824 11.41140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042977 B = 0.002103 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.350695 B =13313.445279 C =13665.705294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.619 4.619 4 S 2.450 3.550 5 O -0.919 6.919 6 O -0.919 6.919 7 C -0.657 4.657 8 C 0.554 3.446 9 O -0.533 6.533 10 N -0.605 5.605 11 C 0.095 3.905 12 C -0.121 4.121 13 C -0.106 4.106 14 H 0.086 0.914 15 C 0.164 3.836 16 N -0.731 5.731 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.110 3.890 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -17.621 -4.031 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.748 4.748 4 S 2.627 3.373 5 O -0.916 6.916 6 O -0.916 6.916 7 C -0.784 4.784 8 C 0.340 3.660 9 O -0.411 6.411 10 N -0.337 5.337 11 C -0.028 4.028 12 C -0.159 4.159 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.036 3.964 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.013 4.013 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.431 -18.791 -4.097 27.340 hybrid contribution -0.217 1.884 0.028 1.896 sum -19.648 -16.908 -4.070 26.239 Atomic orbital electron populations 1.21731 0.93780 1.02494 1.02391 1.21282 0.98468 0.91692 1.04199 1.30482 1.25835 1.06671 1.11772 1.07516 0.77488 0.76414 0.75892 1.93585 1.78640 1.73660 1.45760 1.93590 1.78592 1.73609 1.45776 1.30866 1.03176 1.30976 1.13351 1.18653 0.87366 0.82709 0.77225 1.90869 1.60685 1.38764 1.50779 1.48369 1.08947 1.04883 1.71545 1.22257 0.95291 0.83697 1.01560 1.22655 0.93962 0.96063 1.03225 1.22596 0.96438 0.92704 1.00817 0.89541 1.20549 0.92865 0.86943 0.96055 1.42284 1.26999 1.09678 1.58538 1.19186 1.00079 0.93672 1.24254 0.91169 1.24736 0.98417 0.97664 1.00108 1.69641 1.32765 1.19265 1.36618 0.86248 0.81870 0.80284 0.77658 1.21260 1.21692 1.21233 1.22408 0.80146 0.96782 1.01917 0.92209 0.91798 0.92196 0.89999 0.89979 0.84749 0.84783 0.82319 0.82361 0.91135 0.91200 0.89209 0.89928 0.95837 0.95884 0.78244 0.93449 0.90573 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.66 5.94 -26.73 -0.16 -0.82 16 3 C -0.62 -2.73 5.81 37.16 0.22 -2.51 16 4 S 2.45 23.06 3.96 -107.50 -0.43 22.64 16 5 O -0.92 -12.26 17.94 -59.53 -1.07 -13.33 16 6 O -0.92 -12.38 17.95 -59.53 -1.07 -13.45 16 7 C -0.66 -4.98 5.48 36.01 0.20 -4.78 16 8 C 0.55 7.44 7.87 -10.98 -0.09 7.35 16 9 O -0.53 -9.41 15.88 2.56 0.04 -9.37 16 10 N -0.60 -7.66 3.33 -170.51 -0.57 -8.23 16 11 C 0.09 0.95 6.49 -3.07 -0.02 0.93 16 12 C -0.12 -1.55 6.13 -24.90 -0.15 -1.71 16 13 C -0.11 -1.58 3.11 -88.46 -0.27 -1.85 16 14 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.10 5.71 -4.04 -0.02 3.07 16 16 N -0.73 -17.62 5.45 -59.91 -0.33 -17.94 16 17 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.11 1.52 6.38 -2.51 -0.02 1.51 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.16 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.16 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 41 H 0.38 9.60 7.53 -40.82 -0.31 9.30 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 44 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -38.53 376.59 -9.68 -48.21 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.44 Total: 1.78 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.20 Total: -6.24 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.17 Total: -52.93 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -2.10 Total: -36.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 23.06 SS G_CDS: -0.43 Total: 22.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.53 -9.68 -48.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491857492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.760 kcal (2) G-P(sol) polarization free energy of solvation -38.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds