Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 N 1.46507 * 109.47394 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99864 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99734 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.54671 * 325.19126 * 9 7 6 11 11 C 1.53029 * 109.55088 * 85.48555 * 9 7 6 12 12 C 1.52591 * 109.98843 * 183.50450 * 11 9 7 13 13 C 1.52586 * 110.64236 * 290.01429 * 12 11 9 14 14 C 1.53035 * 109.98685 * 69.97986 * 13 12 11 15 15 S 1.81668 * 109.00153 * 296.35415 * 14 13 12 16 16 O 1.42093 * 108.66274 * 299.96716 * 15 14 13 17 17 O 1.42102 * 108.66401 * 168.62608 * 15 14 13 18 18 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 19 19 C 1.36931 * 119.99971 * 274.99678 * 18 2 1 20 20 H 1.08005 * 120.00425 * 359.97438 * 19 18 2 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00553 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47166 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00188 * 23 21 19 26 26 H 1.48508 * 109.46891 * 329.99990 * 23 21 19 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 31 31 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 32 32 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 33 33 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 34 34 H 0.96996 * 119.99924 * 0.02562 * 6 5 4 35 35 H 1.09004 * 109.38585 * 303.65857 * 11 9 7 36 36 H 1.09003 * 109.38811 * 63.34394 * 11 9 7 37 37 H 1.08998 * 109.24362 * 169.70806 * 12 11 9 38 38 H 1.09005 * 109.21081 * 50.28805 * 12 11 9 39 39 H 1.09001 * 109.38231 * 309.83068 * 13 12 11 40 40 H 1.08996 * 109.38659 * 190.14411 * 13 12 11 41 41 H 1.09006 * 109.54704 * 176.49650 * 14 13 12 42 42 H 1.09001 * 109.54779 * 56.21412 * 14 13 12 43 43 H 0.97004 * 120.00223 * 94.99655 * 18 2 1 44 44 H 0.96997 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 7 4.0531 -1.3046 -2.5096 7 6 5.3740 -1.3400 -2.7752 8 8 6.1583 -0.8001 -2.0241 9 6 5.8763 -2.0505 -4.0057 10 1 5.2541 -2.9237 -4.2021 11 6 5.8217 -1.1002 -5.2039 12 6 6.2460 -1.8350 -6.4722 13 6 7.7387 -2.1495 -6.4378 14 6 8.0226 -3.2253 -5.3870 15 16 7.5958 -2.5755 -3.7451 16 8 8.3893 -1.4244 -3.4913 17 8 7.6073 -3.6491 -2.8141 18 7 2.0183 -0.6906 1.1962 19 6 2.1491 -0.0075 2.3757 20 1 1.8927 1.0405 2.4242 21 6 2.6123 -0.6617 3.5090 22 7 2.9253 -1.9388 3.4499 23 14 2.7901 0.2700 5.1183 24 1 1.5225 0.1778 5.8863 25 1 3.8952 -0.3226 5.9139 26 1 3.0941 1.6955 4.8339 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 3.8532 0.4369 -1.3574 33 1 3.9994 -1.0729 -0.4259 34 1 3.4258 -1.7360 -3.1106 35 1 4.8043 -0.7282 -5.3246 36 1 6.4942 -0.2601 -5.0304 37 1 6.0303 -1.2100 -7.3387 38 1 5.6846 -2.7659 -6.5521 39 1 8.2933 -1.2449 -6.1883 40 1 8.0556 -2.5077 -7.4172 41 1 9.0800 -3.4890 -5.4115 42 1 7.4200 -4.1088 -5.5977 43 1 2.2490 -1.6318 1.1526 44 1 3.2493 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492034983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = -108.726148 kcal Electronic energy + Delta-G solvation = -25252.746291 eV Core-core repulsion = 21525.296797 eV Total energy + Delta-G solvation = -3727.449494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.96739 -37.65488 -36.85623 -36.63326 -36.08565 -34.49260 -32.64487 -32.09798 -29.47579 -28.55492 -27.78027 -24.63626 -23.79565 -22.62709 -21.51009 -20.89794 -19.78690 -18.99119 -17.78687 -17.19915 -17.07862 -16.55679 -15.91961 -15.54976 -15.47510 -15.08194 -14.79897 -14.36854 -14.28266 -13.93450 -13.66932 -13.50210 -13.36782 -12.90479 -12.50759 -12.37796 -12.16727 -12.14276 -12.06424 -12.02464 -11.81664 -11.55978 -11.47564 -11.13785 -10.97098 -10.90090 -10.74487 -10.62875 -10.55700 -10.30996 -10.04926 -9.82435 -9.61321 -8.99548 -8.85991 -6.92998 -5.71659 -3.00901 -0.31375 2.37650 2.48068 2.90854 3.48279 3.53702 3.55732 3.57659 3.67392 4.04364 4.09267 4.22518 4.34225 4.41064 4.56887 4.64053 4.73388 4.91265 5.04217 5.23410 5.24802 5.27396 5.36339 5.42491 5.47656 5.56344 5.63920 5.66279 5.85671 6.03318 6.15481 6.29601 6.36874 6.40557 6.57820 6.67631 6.85276 7.05196 7.39223 7.74930 8.08090 8.46436 9.57821 10.13660 10.48040 11.50915 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.003001 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.461674 B = 9329.260492 C =10307.414373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.608 4.608 10 H 0.153 0.847 11 C -0.099 4.099 12 C -0.138 4.138 13 C -0.113 4.113 14 C -0.612 4.612 15 S 2.443 3.557 16 O -0.905 6.905 17 O -0.929 6.929 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -2.539 -27.317 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.393 6.393 9 C -0.717 4.717 10 H 0.171 0.829 11 C -0.137 4.137 12 C -0.176 4.176 13 C -0.151 4.151 14 C -0.741 4.741 15 S 2.620 3.380 16 O -0.902 6.902 17 O -0.926 6.926 18 N -0.366 5.366 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.629 -1.957 -25.834 26.512 hybrid contribution -0.833 -0.391 -0.067 0.923 sum 4.795 -2.349 -25.901 26.446 Atomic orbital electron populations 1.22426 0.99113 1.00828 0.99974 1.20146 0.91905 0.95594 0.85968 0.93240 1.22071 0.93595 1.01944 0.99498 1.21610 0.94688 0.97406 0.86821 1.45990 1.06426 1.56427 1.27543 1.19103 0.83768 0.80777 0.84721 1.90928 1.54763 1.45065 1.48518 1.30703 1.27848 1.09668 1.03454 0.82891 1.21290 1.05577 0.97140 0.89721 1.21720 0.95632 1.01928 0.98292 1.21316 0.97017 0.97542 0.99217 1.30388 1.12310 1.10067 1.21341 1.07797 0.76963 0.76059 0.77203 1.93599 1.64444 1.49473 1.82695 1.93615 1.85428 1.55574 1.57940 1.42459 1.78118 1.10675 1.05361 1.19204 1.36730 0.93844 0.87316 0.91211 1.24737 1.02037 0.95977 0.98085 1.69653 1.50721 1.08684 1.28912 0.86211 0.77197 0.78889 0.84013 1.21854 1.21774 1.20746 0.94613 0.93527 0.92667 0.91487 0.91871 0.91311 0.89210 0.76746 0.89034 0.88925 0.89190 0.90436 0.89436 0.89341 0.84504 0.84833 0.78259 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.30 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.96 4.87 -26.74 -0.13 -2.09 16 5 C 0.12 1.92 5.56 -4.04 -0.02 1.90 16 6 N -0.71 -9.21 5.56 -60.29 -0.33 -9.55 16 7 C 0.53 7.82 6.96 -10.99 -0.08 7.74 16 8 O -0.52 -10.36 15.47 -9.59 -0.15 -10.51 16 9 C -0.61 -5.63 2.80 -27.87 -0.08 -5.71 16 10 H 0.15 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.10 -0.63 5.00 -26.93 -0.13 -0.76 16 12 C -0.14 -0.50 5.63 -27.15 -0.15 -0.65 16 13 C -0.11 -0.49 5.73 -26.93 -0.15 -0.65 16 14 C -0.61 -3.41 6.35 37.18 0.24 -3.17 16 15 S 2.44 27.99 4.32 -107.50 -0.46 27.53 16 16 O -0.91 -13.96 17.05 -64.34 -1.10 -15.06 16 17 O -0.93 -14.56 18.10 -57.81 -1.05 -15.60 16 18 N -0.72 -17.81 4.57 -53.43 -0.24 -18.06 16 19 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 23 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.87 7.75 -51.92 -0.40 1.47 16 34 H 0.40 3.52 8.47 -40.82 -0.35 3.17 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.70 8.01 -51.93 -0.42 0.29 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 39 H 0.09 0.43 8.01 -51.93 -0.42 0.02 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -39.54 369.78 -10.02 -49.56 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.36 Total: 6.12 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.60 Total: -10.01 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.15 Total: -55.53 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -2.29 Total: -41.17 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 27.99 SS G_CDS: -0.46 Total: 27.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.54 -10.02 -49.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492034983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.168 kcal (2) G-P(sol) polarization free energy of solvation -39.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds