Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.54981 * 39.81438 * 9 7 6 11 11 C 1.53033 * 109.55114 * 279.52032 * 9 7 6 12 12 C 1.52592 * 109.98639 * 176.49902 * 11 9 7 13 13 C 1.52586 * 110.64536 * 69.98692 * 12 11 9 14 14 C 1.53036 * 109.98357 * 290.01173 * 13 12 11 15 15 S 1.81677 * 109.54873 * 160.00371 * 9 7 6 16 16 O 1.42101 * 108.65987 * 288.48041 * 15 9 7 17 17 O 1.42095 * 108.66275 * 59.82445 * 15 9 7 18 18 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 19 19 C 1.36941 * 120.00103 * 84.99785 * 18 2 1 20 20 H 1.08000 * 119.99734 * 0.02562 * 19 18 2 21 21 C 1.38812 * 119.99814 * 180.02562 * 19 18 2 22 22 N 1.31613 * 120.00446 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99795 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46973 * 89.99359 * 23 21 19 25 25 H 1.48493 * 109.46858 * 209.99653 * 23 21 19 26 26 H 1.48501 * 109.47035 * 329.99415 * 23 21 19 27 27 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 28 28 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 31 31 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 35 35 H 1.09000 * 109.38693 * 296.65413 * 11 9 7 36 36 H 1.09000 * 109.38502 * 56.34135 * 11 9 7 37 37 H 1.09004 * 109.24022 * 309.68398 * 12 11 9 38 38 H 1.09003 * 109.20803 * 190.27000 * 12 11 9 39 39 H 1.08996 * 109.38336 * 169.85748 * 13 12 11 40 40 H 1.08990 * 109.38273 * 50.17138 * 13 12 11 41 41 H 1.09001 * 109.55709 * 303.79519 * 14 13 12 42 42 H 1.09000 * 109.55038 * 183.49967 * 14 13 12 43 43 H 0.97003 * 120.00235 * 265.00555 * 18 2 1 44 44 H 0.96996 * 120.00501 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 1 5.3104 -2.9693 4.1532 11 6 5.7068 -1.1409 5.2258 12 6 6.1316 -1.8813 6.4906 13 6 7.6431 -2.0894 6.5102 14 6 8.0441 -3.1114 5.4440 15 16 7.6378 -2.4451 3.8035 16 8 7.7625 -3.4874 2.8457 17 8 8.3569 -1.2343 3.6136 18 7 2.0183 -0.6905 -1.1963 19 6 2.1490 -0.0072 -2.3758 20 1 1.8925 1.0408 -2.4241 21 6 2.6112 -0.6616 -3.5094 22 7 2.9242 -1.9386 -3.4505 23 14 2.7902 0.2706 -5.1183 24 1 4.1529 0.8548 -5.2029 25 1 2.5792 -0.6603 -6.2558 26 1 1.7808 1.3584 -5.1750 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -1.7716 1.2053 31 1 1.6054 -0.2620 2.1368 32 1 3.8532 0.4368 1.3572 33 1 3.9994 -1.0729 0.4257 34 1 3.4258 -1.7353 3.1108 35 1 6.3243 -0.2512 5.1028 36 1 4.6615 -0.8447 5.3138 37 1 5.6350 -2.8510 6.5231 38 1 5.8379 -1.2980 7.3633 39 1 7.9455 -2.4533 7.4921 40 1 8.1414 -1.1414 6.3082 41 1 7.4979 -4.0408 5.6057 42 1 9.1157 -3.3011 5.5054 43 1 2.2489 -1.6317 -1.1529 44 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492034985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -108.988434 kcal Electronic energy + Delta-G solvation = -25252.022702 eV Core-core repulsion = 21524.561835 eV Total energy + Delta-G solvation = -3727.460867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.97275 -37.65656 -36.85368 -36.63984 -36.07956 -34.49764 -32.65406 -32.09620 -29.46970 -28.55612 -27.78214 -24.63158 -23.80224 -22.63694 -21.51072 -20.89842 -19.78751 -18.98892 -17.79562 -17.20423 -17.07590 -16.53917 -15.93223 -15.54412 -15.46634 -15.08865 -14.81502 -14.36721 -14.29513 -13.94401 -13.66566 -13.50087 -13.37371 -12.89626 -12.50850 -12.37855 -12.16603 -12.14117 -12.06580 -12.02782 -11.81762 -11.56166 -11.48023 -11.13895 -10.97637 -10.90193 -10.73529 -10.64206 -10.55412 -10.30362 -10.06340 -9.83216 -9.61618 -8.99777 -8.86185 -6.93177 -5.71908 -3.01137 -0.30873 2.38584 2.47284 2.90863 3.48732 3.53545 3.55079 3.58005 3.67743 4.04325 4.09056 4.22670 4.34109 4.40975 4.56685 4.63869 4.73336 4.91199 5.04018 5.23175 5.24176 5.27044 5.36189 5.42177 5.47031 5.56214 5.63295 5.66077 5.85567 6.03219 6.15329 6.29507 6.36708 6.40351 6.57594 6.67477 6.85219 7.05140 7.38715 7.74827 8.07659 8.46179 9.57613 10.13459 10.47827 11.50671 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002993 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.725174 B = 9351.512915 C =10344.473955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.535 3.465 8 O -0.518 6.518 9 C -0.609 4.609 10 H 0.154 0.846 11 C -0.099 4.099 12 C -0.138 4.138 13 C -0.113 4.113 14 C -0.613 4.613 15 S 2.445 3.555 16 O -0.928 6.928 17 O -0.906 6.906 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -2.661 27.322 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.318 3.682 8 O -0.394 6.394 9 C -0.717 4.717 10 H 0.172 0.828 11 C -0.138 4.138 12 C -0.176 4.176 13 C -0.151 4.151 14 C -0.742 4.742 15 S 2.622 3.378 16 O -0.925 6.925 17 O -0.903 6.903 18 N -0.366 5.366 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.394 -2.027 25.858 26.493 hybrid contribution -0.819 -0.449 0.037 0.935 sum 4.575 -2.475 25.896 26.413 Atomic orbital electron populations 1.22427 0.99109 1.00826 0.99977 1.20144 0.91908 0.95595 0.85964 0.93239 1.22069 0.93594 1.01935 0.99502 1.21611 0.94681 0.97430 0.86803 1.45968 1.06410 1.56455 1.27529 1.19096 0.83778 0.80654 0.84704 1.90925 1.54766 1.45160 1.48587 1.30728 1.28675 1.09274 1.03069 0.82772 1.21302 1.05432 0.97641 0.89414 1.21721 0.95473 1.02045 0.98345 1.21313 0.96367 0.98386 0.99021 1.30396 1.11988 1.10522 1.21256 1.07748 0.76897 0.76079 0.77118 1.93611 1.84443 1.57889 1.56560 1.93593 1.67688 1.45187 1.83881 1.42461 1.78125 1.10661 1.05373 1.19205 1.36782 0.93818 0.87301 0.91209 1.24732 1.02048 0.95946 0.98082 1.69645 1.50729 1.08662 1.28943 0.86217 0.77851 0.78566 0.83711 1.21640 1.21855 1.20843 0.94607 0.92669 0.93529 0.91499 0.91869 0.91308 0.89209 0.76737 0.88963 0.89016 0.90417 0.89192 0.89343 0.89448 0.84832 0.84513 0.78268 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.30 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.95 4.87 -26.74 -0.13 -2.08 16 5 C 0.12 1.92 5.56 -4.04 -0.02 1.90 16 6 N -0.71 -9.17 5.56 -60.29 -0.33 -9.51 16 7 C 0.54 7.83 7.01 -10.99 -0.08 7.76 16 8 O -0.52 -10.41 15.42 -9.31 -0.14 -10.56 16 9 C -0.61 -5.63 2.81 -27.87 -0.08 -5.71 16 10 H 0.15 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.10 -0.62 5.00 -26.92 -0.13 -0.76 16 12 C -0.14 -0.49 5.63 -27.15 -0.15 -0.64 16 13 C -0.11 -0.49 5.73 -26.92 -0.15 -0.64 16 14 C -0.61 -3.41 6.35 37.18 0.24 -3.17 16 15 S 2.45 28.02 4.25 -107.50 -0.46 27.57 16 16 O -0.93 -14.60 18.10 -57.81 -1.05 -15.64 16 17 O -0.91 -13.94 17.11 -64.26 -1.10 -15.04 16 18 N -0.72 -17.79 4.57 -53.43 -0.24 -18.03 16 19 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 23 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.87 7.75 -51.93 -0.40 1.47 16 34 H 0.40 3.49 8.47 -40.82 -0.35 3.14 16 35 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.43 8.01 -51.93 -0.42 0.01 16 41 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -39.55 369.76 -10.01 -49.56 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.36 Total: 6.03 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.60 Total: -9.96 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.15 Total: -55.44 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -2.29 Total: -41.24 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 28.02 SS G_CDS: -0.46 Total: 27.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.55 -10.01 -49.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492034985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.431 kcal (2) G-P(sol) polarization free energy of solvation -39.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds