Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 H 1.09006 * 109.54399 * 325.19719 * 9 7 6 11 11 C 1.53037 * 109.54837 * 85.48352 * 9 7 6 12 12 C 1.52590 * 109.98661 * 183.50671 * 11 9 7 13 13 C 1.52585 * 110.63993 * 290.01836 * 12 11 9 14 14 C 1.53028 * 109.99115 * 69.98353 * 13 12 11 15 15 S 1.81658 * 109.55266 * 205.00293 * 9 7 6 16 16 O 1.42107 * 108.66577 * 300.17523 * 15 9 7 17 17 O 1.42109 * 108.66552 * 71.51323 * 15 9 7 18 18 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 19 19 C 1.36938 * 119.99628 * 85.00236 * 18 2 1 20 20 H 1.08001 * 120.00307 * 0.02562 * 19 18 2 21 21 C 1.38816 * 120.00044 * 179.97438 * 19 18 2 22 22 N 1.31623 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47187 * 60.00068 * 23 21 19 25 25 H 1.48503 * 109.47243 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47154 * 300.00467 * 23 21 19 27 27 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 28 28 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 30 30 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 31 31 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 32 32 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 33 33 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.38488 * 303.66248 * 11 9 7 36 36 H 1.09000 * 109.38348 * 63.35012 * 11 9 7 37 37 H 1.08996 * 109.24469 * 169.71586 * 12 11 9 38 38 H 1.09006 * 109.20576 * 50.29183 * 12 11 9 39 39 H 1.09002 * 109.38547 * 309.81853 * 13 12 11 40 40 H 1.09005 * 109.38101 * 190.14155 * 13 12 11 41 41 H 1.09006 * 109.55362 * 176.49222 * 14 13 12 42 42 H 1.09002 * 109.55057 * 56.20939 * 14 13 12 43 43 H 0.97002 * 120.00479 * 265.00508 * 18 2 1 44 44 H 0.96990 * 120.00063 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1588 -0.8051 2.0212 9 6 5.8771 -2.0595 4.0002 10 1 5.1603 -1.9378 4.8124 11 6 6.0540 -3.5475 3.6893 12 6 6.4796 -4.2965 4.9488 13 6 7.9071 -3.9249 5.3390 14 6 7.9519 -2.4821 5.8471 15 16 7.4806 -1.3640 4.4951 16 8 8.3995 -1.5328 3.4243 17 8 7.2670 -0.0658 5.0321 18 7 2.0183 -0.6907 -1.1962 19 6 2.1491 -0.0076 -2.3757 20 1 1.8927 1.0404 -2.4242 21 6 2.6123 -0.6618 -3.5091 22 7 2.9253 -1.9389 -3.4500 23 14 2.7914 0.2702 -5.1179 24 1 3.7465 1.3926 -4.9361 25 1 3.3002 -0.6483 -6.1681 26 1 1.4691 0.8071 -5.5288 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.7515 -1.7716 1.2056 31 1 1.6053 -0.2618 2.1370 32 1 3.8532 0.4367 1.3574 33 1 3.9993 -1.0730 0.4260 34 1 3.4256 -1.7352 3.1112 35 1 5.1106 -3.9561 3.3269 36 1 6.8178 -3.6683 2.9211 37 1 6.4252 -5.3693 4.7645 38 1 5.8051 -4.0376 5.7651 39 1 8.5570 -4.0226 4.4693 40 1 8.2537 -4.5961 6.1248 41 1 8.9617 -2.2444 6.1819 42 1 7.2543 -2.3657 6.6766 43 1 2.2490 -1.6319 -1.1526 44 1 3.2485 -2.3962 -4.2419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492034986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -109.145323 kcal Electronic energy + Delta-G solvation = -25257.494165 eV Core-core repulsion = 21530.026494 eV Total energy + Delta-G solvation = -3727.467671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.96285 -37.65078 -36.86866 -36.63557 -36.11462 -34.49586 -32.64016 -32.10165 -29.47608 -28.55488 -27.77826 -24.62130 -23.80482 -22.62794 -21.48258 -20.89685 -19.79381 -19.00699 -17.78598 -17.21091 -17.08456 -16.57500 -15.91779 -15.62473 -15.37779 -15.11092 -14.80354 -14.35671 -14.26255 -13.95828 -13.63186 -13.50716 -13.38494 -12.90685 -12.51047 -12.36467 -12.19492 -12.16720 -12.06859 -12.00760 -11.80075 -11.56470 -11.43908 -11.12935 -10.98704 -10.90072 -10.73668 -10.64638 -10.55050 -10.31966 -10.07840 -9.82935 -9.62276 -8.99525 -8.86734 -6.94373 -5.73425 -3.02304 -0.33398 2.35675 2.47264 2.90781 3.48037 3.52823 3.53365 3.56288 3.65949 4.06173 4.09991 4.23481 4.35418 4.42644 4.58090 4.62973 4.73626 4.93511 5.04716 5.23406 5.29601 5.30380 5.36412 5.47172 5.53681 5.55783 5.65469 5.69654 5.85463 6.03759 6.15623 6.29695 6.36099 6.40274 6.57796 6.67164 6.85220 7.04964 7.39124 7.73473 8.08049 8.44946 9.56358 10.12123 10.46717 11.49179 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002914 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.278241 B = 9606.976528 C =10039.677110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.606 4.606 10 H 0.152 0.848 11 C -0.101 4.101 12 C -0.138 4.138 13 C -0.113 4.113 14 C -0.611 4.611 15 S 2.443 3.557 16 O -0.903 6.903 17 O -0.934 6.934 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -6.732 24.725 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.393 6.393 9 C -0.715 4.715 10 H 0.170 0.830 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.152 4.152 14 C -0.740 4.740 15 S 2.620 3.380 16 O -0.900 6.900 17 O -0.931 6.931 18 N -0.366 5.366 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.214 1.214 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.934 -5.478 23.656 24.996 hybrid contribution -0.797 -0.720 -0.146 1.084 sum 5.137 -6.198 23.510 24.850 Atomic orbital electron populations 1.22424 0.99088 1.00808 1.00010 1.20153 0.91915 0.95640 0.85942 0.93191 1.22070 0.93608 1.01879 0.99544 1.21609 0.94680 0.97499 0.86749 1.45989 1.06354 1.56334 1.27707 1.19114 0.83685 0.80450 0.85151 1.90929 1.54669 1.45208 1.48462 1.30689 1.25330 1.08609 1.06870 0.82994 1.21314 1.05577 0.87653 0.99397 1.21716 0.96124 1.02251 0.97431 1.21327 0.98195 0.92585 1.03056 1.30369 1.12664 1.12044 1.18889 1.07788 0.77030 0.76174 0.77053 1.93614 1.58650 1.86048 1.51732 1.93591 1.85335 1.34153 1.79992 1.42444 1.78143 1.10628 1.05360 1.19176 1.36717 0.93839 0.87337 0.91245 1.24723 1.02040 0.95967 0.98071 1.69638 1.50819 1.08672 1.28999 0.86285 0.77713 0.78701 0.83592 1.21190 1.21741 1.21383 0.92665 0.93547 0.94573 0.91537 0.91813 0.91286 0.89220 0.76744 0.88828 0.88769 0.89090 0.90508 0.89355 0.89318 0.84526 0.84889 0.78305 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -1.96 4.87 -26.73 -0.13 -2.09 16 5 C 0.12 1.92 5.56 -4.04 -0.02 1.90 16 6 N -0.71 -9.21 5.56 -60.30 -0.33 -9.55 16 7 C 0.53 7.82 6.96 -10.98 -0.08 7.74 16 8 O -0.52 -10.37 15.47 -9.60 -0.15 -10.51 16 9 C -0.61 -5.62 2.80 -27.86 -0.08 -5.69 16 10 H 0.15 0.74 8.14 -51.92 -0.42 0.31 16 11 C -0.10 -0.73 5.00 -26.92 -0.13 -0.87 16 12 C -0.14 -0.58 5.63 -27.15 -0.15 -0.73 16 13 C -0.11 -0.53 5.73 -26.93 -0.15 -0.69 16 14 C -0.61 -3.31 6.35 37.17 0.24 -3.07 16 15 S 2.44 27.05 4.32 -107.50 -0.46 26.58 16 16 O -0.90 -13.98 17.05 -64.34 -1.10 -15.07 16 17 O -0.93 -13.53 18.10 -57.80 -1.05 -14.58 16 18 N -0.72 -17.65 4.57 -53.42 -0.24 -17.89 16 19 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 34 H 0.40 3.51 8.47 -40.82 -0.35 3.17 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.84 8.01 -51.93 -0.42 0.42 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 39 H 0.09 0.48 8.01 -51.93 -0.42 0.07 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -38.97 369.78 -10.02 -48.99 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.36 Total: 6.34 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.60 Total: -10.08 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.15 Total: -55.01 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -2.29 Total: -40.17 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 16 Polarization: 27.05 SS G_CDS: -0.46 Total: 26.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.97 -10.02 -48.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492034986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.155 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds