Wall clock time and date at job start Tue Mar 31 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 N 1.46500 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00400 * 269.99864 * 4 3 2 6 6 H 1.07996 * 120.00235 * 326.22230 * 5 4 3 7 7 C 1.38821 * 120.00104 * 146.21760 * 5 4 3 8 8 N 1.31620 * 119.99872 * 337.68933 * 7 5 4 9 9 Si 1.86794 * 120.00152 * 157.68660 * 7 5 4 10 10 H 1.48494 * 109.47325 * 90.00157 * 9 7 5 11 11 H 1.48507 * 109.47071 * 210.00262 * 9 7 5 12 12 H 1.48502 * 109.47077 * 330.00049 * 9 7 5 13 13 C 1.46506 * 119.99625 * 90.00678 * 4 3 2 14 14 C 1.52998 * 109.47391 * 85.78563 * 13 4 3 15 15 N 1.46493 * 109.47280 * 179.97438 * 14 13 4 16 16 C 1.34775 * 120.00244 * 179.97438 * 15 14 13 17 17 O 1.21287 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00385 * 179.72919 * 16 15 14 19 19 H 1.09007 * 109.63827 * 300.70118 * 18 16 15 20 20 C 1.53879 * 109.64905 * 180.27478 * 18 16 15 21 21 C 1.55047 * 106.62204 * 192.96560 * 20 18 16 22 22 S 1.83284 * 102.56954 * 42.43176 * 21 20 18 23 23 O 1.42098 * 109.35281 * 90.18242 * 22 21 20 24 24 O 1.42103 * 109.35512 * 223.25560 * 22 21 20 25 25 C 1.54162 * 109.64706 * 61.12616 * 18 16 15 26 26 H 1.09002 * 109.47149 * 299.99753 * 1 2 3 27 27 H 1.08997 * 109.47575 * 59.99644 * 1 2 3 28 28 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46638 * 240.00118 * 2 1 3 30 30 H 1.09004 * 109.47059 * 120.00796 * 2 1 3 31 31 H 1.09002 * 109.47253 * 60.00494 * 3 2 1 32 32 H 1.08994 * 109.47594 * 300.00313 * 3 2 1 33 33 H 0.96998 * 120.00035 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46915 * 325.78261 * 13 4 3 35 35 H 1.09003 * 109.46865 * 205.78804 * 13 4 3 36 36 H 1.09000 * 109.47338 * 59.99506 * 14 13 4 37 37 H 1.08997 * 109.46917 * 300.00154 * 14 13 4 38 38 H 0.96996 * 120.00252 * 0.02562 * 15 14 13 39 39 H 1.09001 * 110.02579 * 312.25444 * 20 18 16 40 40 H 1.09002 * 110.02486 * 73.67340 * 20 18 16 41 41 H 1.09001 * 110.78832 * 160.70518 * 21 20 18 42 42 H 1.09003 * 110.78710 * 284.16538 * 21 20 18 43 43 H 1.09001 * 110.32371 * 266.66870 * 25 18 16 44 44 H 1.09004 * 110.31879 * 28.86809 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1892 1.4425 1.1867 6 1 3.7857 1.9626 2.0428 7 6 5.4016 0.7740 1.2888 8 7 5.6911 -0.1959 0.4475 9 14 6.6220 1.2509 2.6200 10 1 6.3603 0.4488 3.8420 11 1 8.0034 0.9886 2.1422 12 1 6.4727 2.6946 2.9342 13 6 4.2380 1.4423 -1.2679 14 6 4.4015 2.8808 -1.7626 15 7 5.1349 2.8807 -3.0307 16 6 5.3975 4.0446 -3.6574 17 8 5.0270 5.0922 -3.1712 18 6 6.1574 4.0451 -4.9588 19 1 7.1369 3.5900 -4.8113 20 6 6.3284 5.4907 -5.4577 21 6 6.8083 5.3983 -6.9291 22 16 5.7531 4.0630 -7.6096 23 8 4.5647 4.6287 -8.1451 24 8 6.5469 3.1965 -8.4086 25 6 5.3704 3.2491 -6.0188 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 6.5383 -0.6628 0.5185 34 1 3.6839 0.8644 -2.0076 35 1 5.2209 0.9951 -1.1195 36 1 4.9555 3.4587 -1.0229 37 1 3.4185 3.3279 -1.9110 38 1 5.4309 2.0430 -3.4198 39 1 5.3757 6.0178 -5.4081 40 1 7.0738 6.0082 -4.8537 41 1 6.6306 6.3371 -7.4536 42 1 7.8614 5.1209 -6.9759 43 1 5.7031 2.2112 -6.0371 44 1 4.3009 3.3010 -5.8143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493302544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:20 Heat of formation + Delta-G solvation = -99.120387 kcal Electronic energy + Delta-G solvation = -25055.544054 eV Core-core repulsion = 21328.511097 eV Total energy + Delta-G solvation = -3727.032957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90817 -37.32804 -36.69849 -36.33793 -35.88157 -34.43663 -32.89190 -31.08104 -30.42349 -28.17334 -26.07044 -25.61345 -23.67727 -22.24542 -21.39035 -20.15777 -19.76341 -19.14584 -17.67568 -17.21994 -16.77840 -16.24569 -15.96038 -15.46196 -15.29416 -14.95019 -14.43372 -14.32973 -14.18635 -14.00611 -13.69028 -13.11679 -12.88863 -12.77628 -12.59246 -12.45191 -12.43637 -12.29941 -12.21456 -11.99357 -11.55922 -11.32468 -11.16789 -11.07754 -10.94551 -10.80151 -10.69071 -10.55522 -10.34715 -10.04454 -10.02193 -9.75233 -9.64218 -8.71875 -8.56773 -6.75392 -5.91841 -3.44066 -0.29290 2.15619 2.65755 3.20146 3.28967 3.32702 3.37498 3.41990 3.72568 4.05706 4.15198 4.29573 4.40121 4.44483 4.57150 4.91767 5.09488 5.14487 5.21338 5.30615 5.41573 5.53383 5.69812 5.70458 5.78273 5.99614 6.08420 6.09765 6.23247 6.41799 6.47316 6.57354 6.63671 6.72117 6.93334 6.99797 7.19405 7.48813 7.71729 7.74013 8.34856 8.38959 9.06111 9.69594 10.24985 11.09913 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003130 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.066240 B = 8943.528348 C = 9984.152909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.134 3.866 14 C 0.096 3.904 15 N -0.714 5.714 16 C 0.517 3.483 17 O -0.540 6.540 18 C -0.105 4.105 19 H 0.119 0.881 20 C -0.102 4.102 21 C -0.586 4.586 22 S 2.394 3.606 23 O -0.935 6.935 24 O -0.938 6.938 25 C -0.592 4.592 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.255 0.745 34 H 0.027 0.973 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 6.351 -13.520 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.007 3.993 14 C -0.030 4.030 15 N -0.364 5.364 16 C 0.301 3.699 17 O -0.418 6.418 18 C -0.127 4.127 19 H 0.137 0.863 20 C -0.141 4.141 21 C -0.716 4.716 22 S 2.577 3.423 23 O -0.932 6.932 24 O -0.935 6.935 25 C -0.721 4.721 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.233 0.767 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.978 6.757 -14.064 15.634 hybrid contribution 1.085 -0.219 1.349 1.745 sum 2.063 6.538 -12.715 14.446 Atomic orbital electron populations 1.21760 0.97724 1.00361 1.00739 1.22065 0.93093 1.00727 1.02045 1.20975 0.85005 0.93564 0.98390 1.43699 0.99501 1.84873 1.01917 1.19108 1.02769 1.26467 0.90398 0.91811 1.25072 1.00607 0.95184 0.98140 1.69968 1.23519 1.20502 1.39178 0.86403 0.80735 0.78715 0.81614 1.21210 1.21489 1.20288 1.21085 1.01304 0.90285 0.86643 1.22435 0.94805 1.03064 0.82649 1.46100 1.57290 1.08197 1.24789 1.20015 0.80196 0.84418 0.85284 1.90718 1.52888 1.31337 1.66857 1.21764 1.00672 0.96566 0.93738 0.86305 1.22057 1.05000 0.95267 0.91772 1.30644 1.14983 1.18655 1.07354 1.08977 0.77014 0.78403 0.77902 1.93632 1.45527 1.77671 1.76349 1.93623 1.70066 1.64534 1.65310 1.30603 1.10798 1.12133 1.18614 0.93363 0.93667 0.93849 0.93127 0.91868 0.93793 0.94831 0.93525 0.95490 0.87610 0.91561 0.93104 0.76714 0.88231 0.87750 0.84152 0.84290 0.83371 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.62 6.26 -26.73 -0.17 -2.79 16 3 C 0.15 2.94 5.69 -4.04 -0.02 2.92 16 4 N -0.58 -13.45 2.45 -173.24 -0.43 -13.88 16 5 C -0.26 -6.67 9.49 -15.06 -0.14 -6.81 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.25 4.93 -17.43 -0.09 0.17 16 8 N -0.89 -23.76 11.32 55.49 0.63 -23.13 16 9 Si 0.90 20.69 29.61 -169.99 -5.03 15.65 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.13 2.82 5.37 -4.04 -0.02 2.80 16 14 C 0.10 1.79 6.00 -4.05 -0.02 1.76 16 15 N -0.71 -10.38 5.48 -60.30 -0.33 -10.71 16 16 C 0.52 7.17 7.00 -10.99 -0.08 7.10 16 17 O -0.54 -9.62 15.80 5.55 0.09 -9.53 16 18 C -0.10 -0.91 2.95 -90.71 -0.27 -1.18 16 19 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 20 C -0.10 -0.80 5.27 -25.19 -0.13 -0.93 16 21 C -0.59 -3.25 7.31 38.24 0.28 -2.97 16 22 S 2.39 18.95 6.10 -107.50 -0.66 18.29 16 23 O -0.93 -11.05 18.14 -57.73 -1.05 -12.10 16 24 O -0.94 -10.39 18.15 -57.73 -1.05 -11.44 16 25 C -0.59 -4.26 6.60 37.76 0.25 -4.01 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 32 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.11 2.50 5.32 -51.93 -0.28 2.22 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 4.77 8.41 -40.82 -0.34 4.42 16 39 H 0.10 0.88 7.72 -51.93 -0.40 0.48 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.15 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.14 1.09 7.88 -51.93 -0.41 0.68 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -34.94 372.62 -9.56 -44.50 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.31 Total: 2.51 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.05 Total: -5.78 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.13 Total: -47.72 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -2.01 Total: -33.07 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.65 kcal Atomic # 16 Polarization: 18.95 SS G_CDS: -0.66 Total: 18.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.94 -9.56 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493302544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.621 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds