Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.36934 * 120.00291 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00027 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99833 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46871 * 89.99927 * 11 9 7 13 13 H 1.48491 * 109.47181 * 210.00122 * 11 9 7 14 14 H 1.48494 * 109.47276 * 330.00520 * 11 9 7 15 15 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 16 16 C 1.34777 * 119.99873 * 275.00296 * 15 2 1 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 2 19 19 C 1.52590 * 109.24042 * 300.55524 * 18 16 15 20 20 C 1.53057 * 109.97608 * 169.67357 * 19 18 16 21 21 S 1.81675 * 108.96603 * 63.70568 * 20 19 18 22 22 O 1.42096 * 108.65908 * 191.35326 * 21 20 19 23 23 O 1.42098 * 108.66209 * 60.01246 * 21 20 19 24 24 C 1.81670 * 101.30651 * 305.68025 * 21 20 19 25 25 C 1.52591 * 109.24501 * 179.43742 * 18 16 15 26 26 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 28 28 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 29 29 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 30 30 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 31 31 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 32 32 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 33 33 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 34 34 H 0.96996 * 120.00401 * 179.97438 * 10 9 7 35 35 H 0.96995 * 120.00050 * 94.72411 * 15 2 1 36 36 H 1.09005 * 109.23578 * 59.99607 * 18 16 15 37 37 H 1.08997 * 109.38399 * 289.87035 * 19 18 16 38 38 H 1.08997 * 109.38625 * 49.55742 * 19 18 16 39 39 H 1.09004 * 109.58207 * 303.85098 * 20 19 18 40 40 H 1.08999 * 109.62937 * 183.59101 * 20 19 18 41 41 H 1.08994 * 109.55284 * 294.44295 * 24 21 20 42 42 H 1.08999 * 109.62460 * 174.20071 * 24 21 20 43 43 H 1.08999 * 109.38390 * 310.44820 * 25 18 16 44 44 H 1.09004 * 109.37800 * 70.23240 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3952 -1.3401 -2.7797 8 1 6.0937 -0.8599 -2.1103 9 6 5.8579 -1.9944 -3.9131 10 7 7.1479 -2.0292 -4.1723 11 14 4.6499 -2.8254 -5.0704 12 1 4.2146 -1.8580 -6.1096 13 1 5.3067 -3.9879 -5.7202 14 1 3.4679 -3.2908 -4.3014 15 7 2.0184 -0.6907 1.1962 16 6 2.1470 -0.0184 2.3572 17 8 1.8589 1.1585 2.4115 18 6 2.6488 -0.7289 3.5877 19 6 1.7110 -1.8865 3.9176 20 6 2.3336 -2.7719 4.9997 21 16 2.5101 -1.8029 6.5262 22 8 3.3199 -2.5332 7.4373 23 8 1.2229 -1.3623 6.9364 24 6 3.4531 -0.3689 5.9308 25 6 2.7114 0.2593 4.7487 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2616 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9994 -1.0728 -0.4259 33 1 3.4259 -1.7349 -3.1112 34 1 7.4713 -2.4867 -4.9641 35 1 2.2453 -1.6328 1.1535 36 1 3.6479 -1.1198 3.3944 37 1 0.7603 -1.4912 4.2754 38 1 1.5392 -2.4801 3.0197 39 1 3.3142 -3.1160 4.6706 40 1 1.6891 -3.6311 5.1854 41 1 4.4437 -0.6913 5.6102 42 1 3.5496 0.3640 6.7318 43 1 3.2362 1.1597 4.4295 44 1 1.6988 0.5205 5.0564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497274282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -109.545506 kcal Electronic energy + Delta-G solvation = -25082.304914 eV Core-core repulsion = 21354.819890 eV Total energy + Delta-G solvation = -3727.485024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47838 -37.70871 -37.14169 -36.40997 -36.29914 -34.62002 -32.52344 -31.93584 -31.03345 -28.61690 -28.29649 -24.23079 -24.00184 -22.81511 -21.44615 -20.90660 -20.33538 -19.26170 -17.91064 -17.48818 -17.18969 -16.76700 -16.33897 -16.09215 -15.43814 -14.75050 -14.61338 -14.56017 -14.32411 -14.03346 -13.83961 -13.59007 -13.44435 -13.30470 -12.81388 -12.66921 -12.54929 -12.51076 -12.38134 -12.31063 -12.12705 -11.89433 -11.61340 -11.52359 -11.32455 -11.15087 -10.96750 -10.81943 -10.60096 -10.47503 -10.21557 -9.93802 -9.66299 -9.18920 -8.95970 -7.31243 -5.83508 -3.19838 -0.39867 2.23794 2.41532 2.90296 3.23857 3.30562 3.33716 3.39624 3.53750 3.93008 4.02763 4.13347 4.25757 4.41690 4.52296 4.57856 4.67298 4.74176 4.84850 5.00643 5.06368 5.12128 5.16814 5.27015 5.35345 5.42186 5.54143 5.54437 5.55676 5.70056 5.72235 5.84207 5.85921 6.05574 6.13145 6.36330 6.60443 6.66066 7.35111 7.92092 8.05122 8.35281 9.14055 9.86263 10.05650 11.34861 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002748 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.541970 B =10186.049471 C =10953.889510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.140 4.140 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.247 4.247 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.718 5.718 16 C 0.524 3.476 17 O -0.536 6.536 18 C -0.132 4.132 19 C -0.104 4.104 20 C -0.603 4.603 21 S 2.414 3.586 22 O -0.944 6.944 23 O -0.936 6.936 24 C -0.602 4.602 25 C -0.093 4.093 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.402 0.598 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 0.252 19.267 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.178 4.178 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.377 4.377 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.581 5.581 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.369 5.369 16 C 0.309 3.691 17 O -0.412 6.412 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.732 4.732 21 S 2.596 3.404 22 O -0.941 6.941 23 O -0.933 6.933 24 C -0.731 4.731 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.237 0.763 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.119 0.881 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.757 0.954 20.170 24.434 hybrid contribution -0.123 -1.085 -1.803 2.108 sum -13.880 -0.131 18.367 23.022 Atomic orbital electron populations 1.22168 0.95284 1.02029 1.02510 1.20987 0.93654 0.97830 0.83536 0.89053 1.22125 0.98096 1.00810 0.96764 1.20609 0.90116 0.96028 0.90148 1.42716 1.05343 1.66137 1.26104 1.19049 0.82207 1.29571 1.06873 0.89313 1.24694 0.95627 1.00625 0.98220 1.69699 1.11759 1.48101 1.28563 0.86517 0.80788 0.79460 0.81518 1.21034 1.21697 1.20401 1.46131 1.66977 1.14201 1.09632 1.20134 0.77594 0.87167 0.84184 1.90719 1.49757 1.15776 1.84980 1.21564 1.02207 0.96674 0.94903 1.21288 0.98902 0.94636 0.99422 1.30238 1.11226 1.13051 1.18720 1.08161 0.76370 0.78267 0.77578 1.93606 1.70331 1.70788 1.59349 1.93598 1.38600 1.81215 1.79880 1.30247 1.13906 1.19584 1.09410 1.21095 1.02286 0.99216 0.90526 0.92534 0.92204 0.91496 0.91408 0.90211 0.95547 0.95666 0.80692 0.92987 0.76312 0.86867 0.88890 0.88737 0.84337 0.84281 0.84561 0.84317 0.88069 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.14 1.62 2.57 -67.92 -0.17 1.45 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.14 -1.80 4.87 -26.73 -0.13 -1.93 16 5 C 0.16 2.81 6.15 -4.04 -0.02 2.78 16 6 N -0.76 -17.24 5.41 -59.91 -0.32 -17.56 16 7 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 11 Si 0.89 21.51 27.74 -169.99 -4.71 16.79 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 15 N -0.72 -6.99 4.34 -53.80 -0.23 -7.22 16 16 C 0.52 5.44 7.10 -10.99 -0.08 5.36 16 17 O -0.54 -7.50 15.44 5.55 0.09 -7.41 16 18 C -0.13 -0.90 2.28 -92.19 -0.21 -1.11 16 19 C -0.10 -0.55 4.99 -26.91 -0.13 -0.68 16 20 C -0.60 -2.57 6.35 37.19 0.24 -2.33 16 21 S 2.41 16.21 5.31 -107.50 -0.57 15.64 16 22 O -0.94 -9.80 18.10 -57.81 -1.05 -10.85 16 23 O -0.94 -9.62 17.93 -57.81 -1.04 -10.65 16 24 C -0.60 -3.04 6.35 37.18 0.24 -2.80 16 25 C -0.09 -0.65 4.46 -26.92 -0.12 -0.77 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.44 7.75 -51.93 -0.40 0.04 16 33 H 0.36 7.93 5.53 -40.82 -0.23 7.71 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.40 3.15 7.87 -40.82 -0.32 2.82 16 36 H 0.11 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.09 0.52 8.01 -51.93 -0.42 0.10 16 38 H 0.09 0.39 7.22 -51.93 -0.37 0.02 16 39 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.81 7.73 -51.93 -0.40 0.40 16 44 H 0.09 0.68 8.00 -51.93 -0.42 0.26 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -38.71 365.11 -9.05 -47.77 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.19 Total: 4.37 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -0.30 Total: -8.23 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.22 Total: -52.92 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -2.00 Total: -28.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: 16.21 SS G_CDS: -0.57 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.71 -9.05 -47.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497274282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.779 kcal (2) G-P(sol) polarization free energy of solvation -38.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds