Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.47621 * 2 1 4 4 C 1.53006 * 109.47019 * 119.99781 * 2 1 3 5 5 C 1.52993 * 109.47478 * 184.99751 * 4 2 1 6 6 N 1.46496 * 109.47551 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00548 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99288 * 0.02562 * 7 6 5 9 9 C 1.38805 * 120.00389 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00257 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 N 1.46504 * 109.47112 * 239.99435 * 2 1 3 16 16 C 1.34770 * 119.99677 * 85.00692 * 15 2 1 17 17 O 1.21277 * 120.00634 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99810 * 179.97438 * 16 15 2 19 19 C 1.53002 * 110.28457 * 59.29803 * 18 16 15 20 20 C 1.54161 * 110.32197 * 297.18149 * 18 16 15 21 21 C 1.54015 * 108.63343 * 213.27268 * 20 18 16 22 22 C 1.55044 * 106.70175 * 47.04765 * 21 20 18 23 23 S 1.82921 * 110.31946 * 181.41069 * 18 16 15 24 24 O 1.42099 * 109.35257 * 234.42513 * 23 18 16 25 25 O 1.42100 * 109.35090 * 7.62775 * 23 18 16 26 26 H 1.08995 * 109.47505 * 300.00640 * 1 2 3 27 27 H 1.09002 * 109.46731 * 60.00278 * 1 2 3 28 28 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47107 * 64.99861 * 4 2 1 30 30 H 1.09000 * 109.46866 * 304.99970 * 4 2 1 31 31 H 1.09004 * 109.46862 * 59.99959 * 5 4 2 32 32 H 1.09004 * 109.46998 * 300.00437 * 5 4 2 33 33 H 0.96999 * 119.99694 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 0.96999 * 119.99718 * 265.00204 * 15 2 1 36 36 H 1.08999 * 109.47106 * 60.70069 * 19 18 16 37 37 H 1.09000 * 109.47233 * 180.70482 * 19 18 16 38 38 H 1.09004 * 109.46996 * 300.69830 * 19 18 16 39 39 H 1.09006 * 109.64579 * 333.04219 * 20 18 16 40 40 H 1.09003 * 109.64972 * 93.33388 * 20 18 16 41 41 H 1.09002 * 109.95015 * 287.75193 * 21 20 18 42 42 H 1.09002 * 110.02941 * 166.38583 * 21 20 18 43 43 H 1.08993 * 110.79235 * 199.34391 * 22 21 20 44 44 H 1.09005 * 110.78780 * 75.87775 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6134 1.3138 6 7 4.0530 -1.3034 2.5103 7 6 5.3950 -1.3402 2.7799 8 1 6.0935 -0.8601 2.1105 9 6 5.8577 -1.9945 3.9133 10 7 7.1476 -2.0294 4.1726 11 14 4.6494 -2.8242 5.0713 12 1 4.2152 -1.8562 6.1104 13 1 3.4668 -3.2891 4.3029 14 1 5.3057 -3.9869 5.7214 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3570 17 8 1.8584 1.1582 -2.4118 18 6 2.6500 -0.7288 -3.5873 19 6 1.7285 -1.8987 -3.9383 20 6 4.0907 -1.2303 -3.3647 21 6 4.8473 -1.1642 -4.7046 22 6 4.5534 0.2309 -5.3139 23 16 2.7606 0.4364 -4.9930 24 8 2.0232 -0.0805 -6.0923 25 8 2.5133 1.7571 -4.5305 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.7516 -1.7715 1.2057 30 1 1.6053 -0.2616 2.1370 31 1 3.8531 0.4369 1.3574 32 1 3.9993 -1.0729 0.4261 33 1 3.4256 -1.7349 3.1113 34 1 7.4708 -2.4863 4.9649 35 1 2.2490 -1.6319 -1.1524 36 1 0.7257 -1.5230 -4.1416 37 1 2.1109 -2.4102 -4.8216 38 1 1.6924 -2.5964 -3.1016 39 1 4.5898 -0.5973 -2.6310 40 1 4.0692 -2.2588 -3.0042 41 1 4.4886 -1.9467 -5.3733 42 1 5.9179 -1.2794 -4.5348 43 1 4.7580 0.2364 -6.3844 44 1 5.1287 1.0043 -4.8049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497289007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -96.827126 kcal Electronic energy + Delta-G solvation = -25897.888960 eV Core-core repulsion = 22170.955446 eV Total energy + Delta-G solvation = -3726.933514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.34219 -37.41360 -37.12508 -36.48315 -35.98950 -34.57650 -32.86748 -31.73670 -30.64018 -28.34162 -27.29664 -25.18515 -23.99674 -22.25521 -21.64602 -21.17666 -20.47931 -18.94720 -17.88091 -17.48337 -16.95937 -16.37048 -16.14538 -15.52132 -15.19161 -14.74289 -14.62552 -14.27302 -14.19954 -13.96099 -13.77045 -13.39374 -13.36217 -13.08451 -12.88535 -12.67002 -12.54298 -12.29922 -12.25429 -12.12124 -12.02918 -11.87155 -11.57927 -11.37613 -11.30835 -10.98188 -10.91217 -10.79615 -10.58298 -10.46662 -10.20464 -9.81963 -9.65407 -9.14710 -8.94666 -7.29960 -5.82697 -3.18822 -0.25009 2.27603 2.37498 2.84521 3.31419 3.34732 3.36848 3.40384 3.76611 3.99606 4.16003 4.22929 4.32745 4.48648 4.53261 4.61073 4.72620 5.05178 5.08821 5.11681 5.14676 5.19425 5.20647 5.40965 5.44119 5.46724 5.54354 5.56939 5.59146 5.65816 5.73254 5.86474 5.88936 6.08105 6.17076 6.38807 6.62188 6.68271 7.32505 7.92967 8.03140 8.36145 9.15037 9.87352 10.06866 11.35666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003363 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.582630 B = 8324.331430 C = 9145.287938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.094 0.906 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.278 1.278 14 H -0.291 1.291 15 N -0.707 5.707 16 C 0.538 3.462 17 O -0.502 6.502 18 C -0.563 4.563 19 C -0.120 4.120 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.595 4.595 23 S 2.408 3.592 24 O -0.932 6.932 25 O -0.891 6.891 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -0.697 -19.473 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.376 4.376 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.204 1.204 14 H -0.217 1.217 15 N -0.359 5.359 16 C 0.320 3.680 17 O -0.376 6.376 18 C -0.653 4.653 19 C -0.178 4.178 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.724 4.724 23 S 2.586 3.414 24 O -0.929 6.929 25 O -0.888 6.888 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.156 0.844 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.078 0.759 -19.935 22.819 hybrid contribution 0.098 -1.715 1.411 2.223 sum -10.980 -0.956 -18.523 21.554 Atomic orbital electron populations 1.22175 0.95231 1.02051 1.02620 1.21034 0.93757 0.97949 0.83311 0.88807 1.22124 0.98111 1.00811 0.96712 1.20619 0.90126 0.96081 0.90141 1.42717 1.05341 1.66132 1.26107 1.19044 0.82203 1.29484 1.06865 0.89311 1.24683 0.95605 1.00638 0.98201 1.69705 1.11749 1.48175 1.28531 0.86527 0.80807 0.79454 0.81557 1.21036 1.20413 1.21716 1.45976 1.66624 1.14217 1.09129 1.19132 0.78545 0.86718 0.83557 1.90991 1.48545 1.14017 1.84031 1.30526 1.04541 1.15183 1.15060 1.21541 0.97997 0.94723 1.03545 1.22145 0.88390 1.05104 0.99005 1.22202 1.04025 0.93708 0.95614 1.30738 1.24881 1.06286 1.10517 1.09035 0.79200 0.76639 0.76530 1.93600 1.68918 1.81401 1.48978 1.93713 1.82968 1.32126 1.79994 0.91384 0.92144 0.92513 0.91398 0.90127 0.95463 0.95636 0.80694 0.93014 0.76266 0.90884 0.89829 0.90159 0.88824 0.87887 0.89341 0.87900 0.84429 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.14 1.74 2.57 -67.93 -0.17 1.56 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 4 C -0.14 -1.86 4.87 -26.73 -0.13 -1.99 16 5 C 0.16 2.83 6.15 -4.05 -0.02 2.81 16 6 N -0.76 -17.30 5.41 -59.91 -0.32 -17.62 16 7 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -28.88 13.97 55.49 0.78 -28.11 16 11 Si 0.89 21.56 27.74 -169.99 -4.71 16.84 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 N -0.71 -7.71 4.39 -53.81 -0.24 -7.94 16 16 C 0.54 6.59 6.37 -10.99 -0.07 6.52 16 17 O -0.50 -8.22 13.65 -18.54 -0.25 -8.47 16 18 C -0.56 -5.05 0.92 -91.16 -0.08 -5.14 16 19 C -0.12 -0.84 7.78 37.16 0.29 -0.55 16 20 C -0.11 -0.75 5.44 -25.59 -0.14 -0.89 16 21 C -0.12 -0.64 6.48 -25.12 -0.16 -0.80 16 22 C -0.59 -3.89 7.31 38.24 0.28 -3.61 16 23 S 2.41 25.18 5.77 -107.50 -0.62 24.56 16 24 O -0.93 -11.40 17.24 -57.71 -0.99 -12.39 16 25 O -0.89 -13.55 15.28 -67.17 -1.03 -14.58 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.45 7.75 -51.93 -0.40 0.05 16 33 H 0.36 7.98 5.53 -40.82 -0.23 7.75 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.40 3.57 8.03 -40.82 -0.33 3.24 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.08 0.43 7.58 -51.93 -0.39 0.04 16 39 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 40 H 0.10 0.55 7.88 -51.93 -0.41 0.15 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -37.96 363.72 -9.25 -47.21 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.22 Total: 5.41 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.12 Total: -10.39 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.22 Total: -53.67 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.27 Total: -35.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: 25.18 SS G_CDS: -0.62 Total: 24.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.96 -9.25 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497289007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.615 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds