Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46907 * 2 1 4 4 C 1.53003 * 109.47041 * 240.00513 * 2 1 3 5 5 C 1.52996 * 109.47301 * 174.99629 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00155 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00015 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99846 * 11 9 7 15 15 N 1.46498 * 109.47235 * 120.00395 * 2 1 3 16 16 C 1.34773 * 119.99864 * 274.99788 * 15 2 1 17 17 O 1.21278 * 120.00284 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99853 * 180.02562 * 16 15 2 19 19 C 1.52995 * 110.28628 * 57.88411 * 18 16 15 20 20 C 1.54165 * 110.31926 * 295.66299 * 18 16 15 21 21 C 1.53869 * 108.70773 * 213.19182 * 20 18 16 22 22 C 1.55049 * 106.62618 * 47.17609 * 21 20 18 23 23 S 1.82920 * 110.31950 * 180.02562 * 18 16 15 24 24 O 1.42104 * 109.35308 * 234.42205 * 23 18 16 25 25 O 1.42095 * 109.35357 * 7.62432 * 23 18 16 26 26 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47089 * 299.99534 * 1 2 3 28 28 H 1.09000 * 109.47427 * 59.99228 * 1 2 3 29 29 H 1.09004 * 109.47038 * 54.99639 * 4 2 1 30 30 H 1.09000 * 109.46939 * 295.00292 * 4 2 1 31 31 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 32 32 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 34 34 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 35 35 H 0.97004 * 119.99596 * 95.00231 * 15 2 1 36 36 H 1.09000 * 109.47252 * 60.70294 * 19 18 16 37 37 H 1.09002 * 109.47406 * 180.70409 * 19 18 16 38 38 H 1.08999 * 109.47257 * 300.69972 * 19 18 16 39 39 H 1.09004 * 109.64423 * 333.03836 * 20 18 16 40 40 H 1.09000 * 109.64874 * 93.33242 * 20 18 16 41 41 H 1.09004 * 110.02675 * 287.89013 * 21 20 18 42 42 H 1.09002 * 110.03331 * 166.46905 * 21 20 18 43 43 H 1.08996 * 110.79586 * 199.30109 * 22 21 20 44 44 H 1.09001 * 110.79104 * 75.83524 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3139 6 7 4.0531 -1.3042 -2.5098 7 6 5.3947 -1.3357 -2.7825 8 1 6.0931 -0.8550 -2.1135 9 6 5.8569 -1.9855 -3.9187 10 7 5.0056 -2.5710 -4.7342 11 14 7.6870 -2.0292 -4.2903 12 1 8.2917 -3.2301 -3.6599 13 1 7.8926 -2.0851 -5.7599 14 1 8.3318 -0.8070 -3.7465 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8592 1.1585 2.4115 18 6 2.6500 -0.7287 3.5873 19 6 4.0313 -1.3318 3.3242 20 6 1.6565 -1.8273 4.0149 21 6 1.6798 -1.9438 5.5490 22 6 1.5857 -0.4996 6.1051 23 16 2.7200 0.4265 5.0038 24 8 4.0286 0.4136 5.5578 25 8 2.1170 1.6595 4.6361 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6053 -0.2616 -2.1370 30 1 1.7516 -1.7714 -1.2058 31 1 3.9995 -1.0727 -0.4262 32 1 3.8531 0.4371 -1.3574 33 1 3.4258 -1.7356 -3.1108 34 1 5.3287 -3.0254 -5.5279 35 1 2.2491 -1.6319 1.1524 36 1 4.7331 -0.5366 3.0730 37 1 4.3766 -1.8524 4.2175 38 1 3.9682 -2.0362 2.4948 39 1 0.6526 -1.5628 3.6828 40 1 1.9486 -2.7788 3.5705 41 1 2.6106 -2.4089 5.8739 42 1 0.8286 -2.5320 5.8918 43 1 1.9308 -0.4594 7.1382 44 1 0.5681 -0.1181 6.0209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497289008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -100.487229 kcal Electronic energy + Delta-G solvation = -25792.854477 eV Core-core repulsion = 22065.762250 eV Total energy + Delta-G solvation = -3727.092227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30536 -37.42297 -37.08174 -36.42740 -35.97846 -34.39528 -32.87134 -31.62993 -30.39420 -27.91206 -27.33062 -25.18034 -24.01793 -22.34101 -21.78816 -21.07144 -20.41042 -18.92239 -17.79049 -17.15152 -16.88502 -16.38688 -16.05018 -15.45496 -15.19700 -14.79418 -14.69097 -14.29518 -14.02271 -13.87701 -13.57642 -13.40032 -13.17834 -13.15269 -12.87268 -12.76116 -12.44590 -12.30452 -12.23609 -12.08300 -11.89193 -11.86397 -11.43825 -11.24826 -11.05384 -10.96066 -10.81991 -10.68299 -10.59713 -10.48290 -10.06971 -9.78732 -9.72176 -9.08470 -8.88883 -6.95601 -5.79585 -3.08483 -0.26058 2.27738 2.40212 2.88709 3.36400 3.41903 3.47610 3.49343 3.74461 3.95962 4.11698 4.19890 4.29913 4.46658 4.54653 4.58651 4.90668 4.99387 5.05658 5.18342 5.21096 5.27908 5.30127 5.31491 5.39421 5.44475 5.52261 5.67777 5.71147 5.80908 5.88984 5.98978 6.18471 6.23593 6.29673 6.46227 6.76907 6.82088 7.38081 7.67830 8.07491 8.39490 9.50679 10.07878 10.42485 11.43292 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.003169 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.743754 B = 8832.744900 C = 9546.222553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.706 5.706 16 C 0.537 3.463 17 O -0.503 6.503 18 C -0.562 4.562 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.598 4.598 23 S 2.409 3.591 24 O -0.928 6.928 25 O -0.891 6.891 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -1.069 22.210 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.358 5.358 16 C 0.319 3.681 17 O -0.377 6.377 18 C -0.652 4.652 19 C -0.181 4.181 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.727 4.727 23 S 2.586 3.414 24 O -0.925 6.925 25 O -0.888 6.888 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.156 0.844 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.234 0.672 22.338 25.013 hybrid contribution 0.494 -1.555 -0.648 1.756 sum -10.739 -0.883 21.690 24.219 Atomic orbital electron populations 1.22169 0.95267 1.02001 1.02548 1.21067 0.93709 0.97896 0.83457 0.89028 1.22069 0.98110 1.00756 0.96349 1.20644 0.90325 0.95710 0.90780 1.42365 1.05424 1.64902 1.25120 1.19232 0.83852 1.28653 1.05385 0.91231 1.24742 0.97745 1.00910 0.97576 1.69660 1.32808 1.40809 1.15004 0.86185 0.85057 0.77709 0.77236 1.21705 1.21733 1.20713 1.45991 1.66462 1.14240 1.09082 1.19126 0.78514 0.86810 0.83608 1.90990 1.48751 1.14036 1.83925 1.30520 1.05353 1.14947 1.14396 1.21579 0.89928 1.02274 1.04362 1.22075 0.98396 0.98319 0.95589 1.22176 1.05495 0.94184 0.93686 1.30756 1.17224 1.09936 1.14790 1.09038 0.77123 0.77151 0.78050 1.93616 1.35867 1.86855 1.76185 1.93710 1.77387 1.37110 1.80564 0.92520 0.92246 0.91369 0.90102 0.91356 0.96399 0.96352 0.78324 0.93508 0.76261 0.90503 0.89893 0.89795 0.89361 0.88004 0.89176 0.88214 0.84436 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.41 16 2 C 0.14 1.84 2.57 -67.93 -0.17 1.67 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.15 2.98 6.15 -4.04 -0.02 2.95 16 6 N -0.73 -18.30 5.60 -59.91 -0.34 -18.63 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 11 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 N -0.71 -8.10 4.40 -53.81 -0.24 -8.34 16 16 C 0.54 6.77 6.37 -10.99 -0.07 6.70 16 17 O -0.50 -8.40 13.64 -18.56 -0.25 -8.65 16 18 C -0.56 -5.15 0.93 -91.17 -0.08 -5.24 16 19 C -0.12 -1.08 7.78 37.15 0.29 -0.79 16 20 C -0.11 -0.57 5.44 -25.67 -0.14 -0.71 16 21 C -0.12 -0.48 6.48 -25.20 -0.16 -0.64 16 22 C -0.60 -3.33 7.30 38.24 0.28 -3.05 16 23 S 2.41 25.36 5.77 -107.50 -0.62 24.74 16 24 O -0.93 -11.98 17.24 -57.71 -0.99 -12.98 16 25 O -0.89 -13.51 15.27 -67.18 -1.03 -14.53 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.40 3.84 7.94 -40.82 -0.32 3.51 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.08 0.66 7.50 -51.93 -0.39 0.27 16 39 H 0.09 0.46 7.85 -51.93 -0.41 0.05 16 40 H 0.10 0.39 7.88 -51.93 -0.41 -0.02 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -37.70 366.68 -9.61 -47.31 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.26 Total: 5.49 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.11 Total: -9.98 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.15 Total: -54.27 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -2.27 Total: -36.17 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 25.36 SS G_CDS: -0.62 Total: 24.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.70 -9.61 -47.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497289008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -37.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds