Wall clock time and date at job start Tue Mar 31 2020 04:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 C 1.52996 * 109.47052 * 179.97438 * 3 2 1 5 5 S 1.81398 * 109.47194 * 180.02562 * 4 3 2 6 6 O 1.42097 * 108.57658 * 65.51229 * 5 4 3 7 7 O 1.42095 * 108.57699 * 294.48793 * 5 4 3 8 8 C 1.81401 * 101.92163 * 180.02562 * 5 4 3 9 9 C 1.50702 * 109.46979 * 179.97438 * 8 5 4 10 10 O 1.21275 * 119.99942 * 359.97438 * 9 8 5 11 11 N 1.34775 * 119.99663 * 180.02562 * 9 8 5 12 12 C 1.46500 * 119.99747 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47094 * 179.97438 * 12 11 9 14 14 H 1.09005 * 112.77820 * 56.28138 * 13 12 11 15 15 C 1.53762 * 113.55204 * 187.12967 * 13 12 11 16 16 C 1.53499 * 83.25406 * 140.99284 * 15 13 12 17 17 N 1.47067 * 113.47054 * 285.49368 * 13 12 11 18 18 C 1.36931 * 136.05422 * 38.13514 * 17 13 12 19 19 H 1.08002 * 120.00438 * 359.63245 * 18 17 13 20 20 C 1.38817 * 119.99680 * 179.35203 * 18 17 13 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.08997 * 109.46992 * 60.00053 * 1 2 3 27 27 H 1.09003 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46774 * 299.99809 * 1 2 3 29 29 H 1.08996 * 109.46774 * 240.00191 * 2 1 3 30 30 H 1.08997 * 109.46992 * 119.99947 * 2 1 3 31 31 H 1.09005 * 109.46971 * 59.99915 * 3 2 1 32 32 H 1.08998 * 109.47523 * 300.00257 * 3 2 1 33 33 H 1.09005 * 109.47185 * 60.00189 * 4 3 2 34 34 H 1.09008 * 109.47182 * 300.00507 * 4 3 2 35 35 H 1.08996 * 109.46967 * 59.99885 * 8 5 4 36 36 H 1.08999 * 109.47052 * 299.99619 * 8 5 4 37 37 H 0.96999 * 120.00461 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.47513 * 59.99776 * 12 11 9 39 39 H 1.09000 * 109.47492 * 299.99885 * 12 11 9 40 40 H 1.09000 * 114.39401 * 27.43188 * 15 13 12 41 41 H 1.09002 * 114.26847 * 254.54125 * 15 13 12 42 42 H 1.09009 * 113.46436 * 218.98766 * 16 15 13 43 43 H 1.08994 * 113.52560 * 88.55941 * 16 15 13 44 44 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 16 4.1747 3.1528 0.0014 6 8 3.7987 3.7654 1.2272 7 8 3.7997 3.7661 -1.2243 8 6 5.9730 2.9145 0.0013 9 6 6.6576 4.2570 0.0013 10 8 5.9974 5.2744 0.0008 11 7 8.0035 4.3271 0.0007 12 6 8.6691 5.6321 0.0012 13 6 10.1858 5.4312 0.0010 14 1 10.5308 4.8230 -0.8353 15 6 10.9786 6.7369 0.1765 16 6 11.8848 5.8571 1.0488 17 7 10.7192 4.9964 1.3007 18 6 10.3124 4.1555 2.3020 19 1 9.3721 3.6310 2.2180 20 6 11.1115 3.9728 3.4223 21 7 12.2575 4.6119 3.5246 22 14 10.5602 2.8197 4.7847 23 1 9.2446 2.2285 4.4307 24 1 11.5617 1.7361 4.9515 25 1 10.4356 3.5785 6.0551 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9338 0.9286 -0.8892 34 1 3.9330 0.9288 0.8909 35 1 6.2656 2.3578 -0.8889 36 1 6.2656 2.3571 0.8911 37 1 8.5316 3.5134 0.0006 38 1 8.3768 6.1888 0.8917 39 1 8.3760 6.1899 -0.8883 40 1 10.4485 7.5151 0.7256 41 1 11.4521 7.0996 -0.7359 42 1 12.2518 6.3631 1.9418 43 1 12.6781 5.3609 0.4898 44 1 12.8156 4.4845 4.3076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499130730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:26 Heat of formation + Delta-G solvation = -61.536923 kcal Electronic energy + Delta-G solvation = -24816.292340 eV Core-core repulsion = 21090.889125 eV Total energy + Delta-G solvation = -3725.403215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.65981 -38.17305 -37.01919 -36.28757 -35.91169 -34.29020 -32.30994 -31.11480 -30.66847 -28.08671 -27.30375 -24.74247 -23.54580 -22.21500 -21.64759 -20.60586 -19.33794 -18.90009 -17.59463 -16.95635 -16.70573 -16.58050 -15.96115 -15.87029 -15.31204 -15.24522 -14.82373 -14.31553 -14.14032 -13.80034 -13.76687 -13.42740 -13.20684 -13.16854 -12.67525 -12.09633 -12.07628 -12.03491 -11.95356 -11.93239 -11.69035 -11.60755 -11.19729 -11.17975 -11.07519 -11.06129 -10.84755 -10.63819 -10.56259 -10.22559 -9.91716 -9.89335 -9.33598 -8.89510 -8.76225 -6.97995 -5.84877 -3.17929 -0.27183 2.57746 2.60434 3.08459 3.31639 3.35614 3.39946 3.69241 3.83836 4.18752 4.31372 4.34926 4.52930 4.57198 4.64139 4.84581 4.98626 5.01131 5.09606 5.13177 5.25766 5.31830 5.35872 5.47059 5.49391 5.62069 5.64993 5.74754 5.83946 5.87230 6.01806 6.25303 6.33330 6.53175 6.60039 6.71737 7.15042 7.32159 7.50663 7.58365 7.89421 8.22251 8.94269 9.61968 10.54747 11.32284 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.003137 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.851089 B = 8924.662593 C =10270.951125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.622 4.622 5 S 2.452 3.548 6 O -0.918 6.918 7 O -0.922 6.922 8 C -0.661 4.661 9 C 0.537 3.463 10 O -0.540 6.540 11 N -0.699 5.699 12 C 0.117 3.883 13 C 0.126 3.874 14 H 0.049 0.951 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.289 1.289 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.407 0.593 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 -9.202 -10.057 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.750 4.750 5 S 2.629 3.371 6 O -0.915 6.915 7 O -0.919 6.919 8 C -0.788 4.788 9 C 0.320 3.680 10 O -0.419 6.419 11 N -0.348 5.348 12 C -0.008 4.008 13 C 0.019 3.981 14 H 0.067 0.933 15 C -0.199 4.199 16 C 0.025 3.975 17 N -0.328 5.328 18 C -0.345 4.345 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.215 1.215 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.242 0.758 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.069 -7.854 -9.715 20.354 hybrid contribution 0.853 -2.154 0.795 2.449 sum -15.215 -10.008 -8.920 20.279 Atomic orbital electron populations 1.21817 0.95392 1.01963 1.02305 1.21493 0.96183 0.95276 1.02591 1.21385 0.89919 0.99729 1.04216 1.30493 1.07234 1.25513 1.11750 1.07420 0.76540 0.77292 0.75835 1.93590 1.79855 1.72378 1.45705 1.93568 1.80016 1.72478 1.45870 1.30865 1.28327 1.06244 1.13395 1.19023 0.83651 0.88053 0.77260 1.90832 1.64343 1.35880 1.50819 1.45835 1.05212 1.11146 1.72615 1.21970 0.93181 0.83651 1.01961 1.22486 0.90432 0.94432 0.90790 0.93332 1.23709 0.99920 0.96290 0.99994 1.22033 0.90002 0.89085 0.96348 1.45713 1.20171 1.52486 1.14458 1.18875 1.02464 1.18394 0.94761 0.90216 1.24795 0.96679 1.00434 0.98429 1.69835 1.12212 1.44896 1.29326 0.86104 0.77508 0.80160 0.82292 1.20551 1.21725 1.21542 0.92412 0.92433 0.92362 0.91546 0.91481 0.89963 0.90016 0.84847 0.84729 0.82493 0.82206 0.75815 0.90533 0.91672 0.90075 0.92245 0.90927 0.95668 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.72 5.93 -26.72 -0.16 -0.88 16 3 C -0.11 -0.87 5.22 -26.73 -0.14 -1.01 16 4 C -0.62 -4.19 5.81 37.16 0.22 -3.97 16 5 S 2.45 29.28 3.96 -107.50 -0.43 28.86 16 6 O -0.92 -14.97 17.95 -59.50 -1.07 -16.04 16 7 O -0.92 -14.10 17.94 -59.56 -1.07 -15.17 16 8 C -0.66 -7.02 6.29 36.01 0.23 -6.79 16 9 C 0.54 8.89 7.85 -10.99 -0.09 8.80 16 10 O -0.54 -11.07 15.62 2.56 0.04 -11.03 16 11 N -0.70 -11.44 5.33 -60.29 -0.32 -11.76 16 12 C 0.12 2.08 5.53 -4.04 -0.02 2.05 16 13 C 0.13 2.36 4.11 -72.26 -0.30 2.06 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.16 -2.85 8.04 -26.08 -0.21 -3.06 16 16 C 0.15 3.38 7.38 -8.51 -0.06 3.32 16 17 N -0.60 -14.32 3.65 -176.83 -0.65 -14.96 16 18 C -0.22 -5.69 10.55 -15.06 -0.16 -5.84 16 19 H 0.08 1.97 7.51 -52.49 -0.39 1.58 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.47 11.51 55.49 0.64 -25.83 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.16 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.16 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.41 6.01 8.38 -40.82 -0.34 5.67 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.83 7.13 -51.92 -0.37 1.46 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -37.83 378.70 -10.01 -47.85 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.43 Total: 2.08 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.42 Total: -6.14 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.33 Total: -52.55 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -2.10 Total: -42.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 29.28 SS G_CDS: -0.43 Total: 28.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.83 -10.01 -47.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499130730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.691 kcal (2) G-P(sol) polarization free energy of solvation -37.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds