Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 S 1.81402 * 109.46941 * 120.00173 * 2 1 3 5 5 O 1.42094 * 108.58125 * 70.51357 * 4 2 1 6 6 O 1.42102 * 108.57630 * 299.48690 * 4 2 1 7 7 C 1.81397 * 101.92092 * 185.00118 * 4 2 1 8 8 C 1.50701 * 109.47278 * 184.85862 * 7 4 2 9 9 O 1.21281 * 119.99994 * 4.98226 * 8 7 4 10 10 N 1.34774 * 120.00157 * 184.98147 * 8 7 4 11 11 C 1.47426 * 125.64607 * 4.92522 * 10 8 7 12 12 C 1.54912 * 104.83132 * 204.14728 * 11 10 8 13 13 C 1.55163 * 101.58148 * 322.99027 * 12 11 10 14 14 C 1.47019 * 125.65070 * 184.94518 * 10 8 7 15 15 H 1.08996 * 110.01144 * 59.42989 * 14 10 8 16 16 C 1.53002 * 109.88416 * 298.34242 * 14 10 8 17 17 N 1.46500 * 109.47336 * 176.91309 * 16 14 10 18 18 C 1.36937 * 119.99821 * 174.91557 * 17 16 14 19 19 H 1.08000 * 120.00322 * 5.17955 * 18 17 16 20 20 C 1.38809 * 119.99758 * 185.18562 * 18 17 16 21 21 N 1.31616 * 120.00107 * 185.38557 * 20 18 17 22 22 Si 1.86802 * 120.00122 * 5.38722 * 20 18 17 23 23 H 1.48499 * 109.47164 * 265.34798 * 22 20 18 24 24 H 1.48495 * 109.47327 * 145.34777 * 22 20 18 25 25 H 1.48493 * 109.47091 * 25.34679 * 22 20 18 26 26 H 1.08997 * 109.47274 * 299.99857 * 1 2 3 27 27 H 1.08997 * 109.47305 * 60.00434 * 1 2 3 28 28 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47274 * 240.00143 * 2 1 3 30 30 H 1.09006 * 109.47031 * 60.00000 * 3 2 1 31 31 H 1.08998 * 109.47032 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47018 * 300.00324 * 3 2 1 33 33 H 1.09004 * 109.47340 * 64.85932 * 7 4 2 34 34 H 1.08998 * 109.47170 * 304.85998 * 7 4 2 35 35 H 1.09003 * 110.36687 * 85.30881 * 11 10 8 36 36 H 1.08995 * 110.45964 * 323.02834 * 11 10 8 37 37 H 1.09001 * 111.00537 * 204.91626 * 12 11 10 38 38 H 1.08991 * 111.00640 * 81.06303 * 12 11 10 39 39 H 1.09004 * 110.71873 * 277.14062 * 13 12 11 40 40 H 1.08998 * 110.72347 * 153.86452 * 13 12 11 41 41 H 1.08997 * 109.47292 * 56.90841 * 16 14 10 42 42 H 1.09010 * 109.46805 * 296.91026 * 16 14 10 43 43 H 0.96999 * 119.99623 * 354.91107 * 17 16 14 44 44 H 0.96999 * 120.00293 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 1.4811 5 8 1.8619 -2.2431 1.3456 6 8 1.6604 -0.1637 2.6284 7 6 3.9265 -0.6032 1.3541 8 6 4.6197 -1.3591 2.4583 9 8 3.9789 -2.0762 3.1972 10 7 5.9516 -1.2383 2.6245 11 6 6.8328 -0.3289 1.8695 12 6 8.2379 -0.9752 1.9566 13 6 8.2310 -1.5423 3.4008 14 6 6.7667 -1.9918 3.5886 15 1 6.6794 -3.0610 3.3955 16 6 6.3058 -1.6816 5.0142 17 7 7.0737 -2.4919 5.9629 18 6 6.9084 -2.3094 7.3099 19 1 6.1530 -1.6288 7.6740 20 6 7.7118 -2.9992 8.2075 21 7 7.4842 -2.9060 9.5005 22 14 9.1159 -4.0597 7.5803 23 1 8.6542 -5.4649 7.4485 24 1 10.2486 -3.9986 8.5386 25 1 9.5610 -3.5586 6.2552 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 4.1513 0.4596 1.4447 34 1 4.2771 -0.9677 0.3885 35 1 6.8407 0.6596 2.3287 36 1 6.5101 -0.2612 0.8306 37 1 9.0206 -0.2265 1.8346 38 1 8.3464 -1.7745 1.2236 39 1 8.4916 -0.7666 4.1210 40 1 8.9089 -2.3916 3.4850 41 1 5.2456 -1.9148 5.1122 42 1 6.4665 -0.6245 5.2261 43 1 7.6992 -3.1578 5.6368 44 1 8.0454 -3.3882 10.1277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499952157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = -84.567368 kcal Electronic energy + Delta-G solvation = -25650.800773 eV Core-core repulsion = 21924.398882 eV Total energy + Delta-G solvation = -3726.401891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.32469 -37.74020 -37.15957 -36.13704 -35.52508 -34.72041 -32.30500 -31.49106 -30.45949 -29.01298 -27.71467 -25.35409 -23.42540 -22.91983 -21.93895 -20.94104 -19.39736 -18.83508 -17.97288 -17.38389 -16.91619 -16.74520 -16.24649 -16.02974 -15.30018 -14.93250 -14.48965 -14.32729 -13.98173 -13.80967 -13.70348 -13.61628 -13.19183 -13.16229 -12.86682 -12.79215 -12.68227 -12.38754 -12.17174 -12.10149 -11.96804 -11.90726 -11.69959 -11.51285 -11.24555 -11.15781 -10.89450 -10.71656 -10.56745 -10.54786 -10.17742 -10.11328 -9.54127 -8.80748 -8.70762 -7.16330 -5.70882 -3.06383 -0.38982 2.36180 2.46242 2.66790 3.40464 3.42374 3.47355 3.48912 3.66230 4.01384 4.05586 4.13235 4.39059 4.52514 4.60873 4.64008 4.65936 4.73703 4.82815 4.95415 5.01321 5.12245 5.18858 5.20400 5.24148 5.37031 5.49323 5.55032 5.55097 5.59464 5.69592 5.73751 5.87008 5.93431 6.19062 6.30599 6.68833 6.93223 7.33899 7.88684 8.07358 8.47668 9.26560 9.98113 10.18303 11.47669 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.003324 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.502793 B = 8421.173196 C = 9253.045479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.584 4.584 3 C -0.149 4.149 4 S 2.449 3.551 5 O -0.914 6.914 6 O -0.915 6.915 7 C -0.657 4.657 8 C 0.552 3.448 9 O -0.513 6.513 10 N -0.602 5.602 11 C 0.096 3.904 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.125 3.875 15 H 0.080 0.920 16 C 0.146 3.854 17 N -0.750 5.750 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.275 1.275 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.031 0.969 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 10.795 -28.637 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.692 4.692 3 C -0.206 4.206 4 S 2.625 3.375 5 O -0.911 6.911 6 O -0.912 6.912 7 C -0.784 4.784 8 C 0.338 3.662 9 O -0.389 6.389 10 N -0.336 5.336 11 C -0.027 4.027 12 C -0.172 4.172 13 C -0.162 4.162 14 C 0.022 3.978 15 H 0.098 0.902 16 C 0.018 3.982 17 N -0.396 5.396 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.201 1.201 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.642 10.060 -27.387 29.923 hybrid contribution 1.666 -0.304 -1.148 2.046 sum -4.976 9.756 -28.535 30.565 Atomic orbital electron populations 1.21632 0.89569 1.04097 1.04815 1.30211 1.07517 1.09855 1.21648 1.21777 1.01425 0.92205 1.05236 1.07768 0.76523 0.76121 0.77110 1.93591 1.81924 1.29384 1.86213 1.93591 1.77077 1.75715 1.44859 1.30903 1.28445 1.11244 1.07778 1.18672 0.81601 0.81974 0.83995 1.90935 1.63494 1.39342 1.45137 1.48299 1.05793 1.41315 1.38190 1.22420 0.90297 0.93811 0.96170 1.22801 0.95715 1.00772 0.97940 1.22727 0.94926 1.02435 0.96143 1.21965 0.89674 0.96117 0.90059 0.90218 1.21012 0.96589 0.94914 0.85697 1.42507 1.50010 1.43891 1.03191 1.19047 1.15201 1.22541 0.80168 0.89242 1.24685 0.99382 1.00049 0.95045 1.69716 1.41330 1.46678 1.00424 0.86537 0.83416 0.80882 0.77915 1.21174 1.21773 1.20130 0.90436 0.89968 0.90791 0.84528 0.90166 0.91186 0.90114 0.82450 0.82435 0.90714 0.90605 0.89650 0.90649 0.89406 0.89890 0.93645 0.95117 0.80837 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.58 -3.37 3.35 -26.73 -0.09 -3.46 16 3 C -0.15 -0.59 8.91 37.16 0.33 -0.26 16 4 S 2.45 27.56 3.61 -107.50 -0.39 27.17 16 5 O -0.91 -14.11 17.57 -63.01 -1.11 -15.22 16 6 O -0.92 -13.90 18.06 -57.83 -1.04 -14.95 16 7 C -0.66 -5.72 4.42 36.01 0.16 -5.56 16 8 C 0.55 8.33 7.68 -10.99 -0.08 8.24 16 9 O -0.51 -10.49 14.29 -4.67 -0.07 -10.56 16 10 N -0.60 -8.23 3.06 -163.02 -0.50 -8.73 16 11 C 0.10 0.84 6.70 -2.53 -0.02 0.82 16 12 C -0.13 -1.17 7.09 -24.58 -0.17 -1.34 16 13 C -0.12 -1.63 6.14 -24.89 -0.15 -1.79 16 14 C 0.12 2.05 2.97 -66.95 -0.20 1.85 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.15 3.14 5.63 -4.04 -0.02 3.11 16 17 N -0.75 -18.78 5.16 -59.91 -0.31 -19.09 16 18 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 19 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -30.27 13.97 55.49 0.78 -29.49 16 22 Si 0.88 22.43 27.69 -169.99 -4.71 17.73 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.41 6.61 56.52 0.37 -6.03 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.13 6.51 -51.93 -0.34 -0.21 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.16 0.79 7.02 -51.92 -0.36 0.43 16 34 H 0.16 0.68 8.13 -51.92 -0.42 0.26 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.41 7.61 -51.93 -0.40 0.02 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.25 7.80 -51.93 -0.40 0.85 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.11 6.61 -51.93 -0.34 0.77 16 42 H 0.03 0.66 8.07 -51.92 -0.42 0.24 16 43 H 0.36 8.55 5.54 -40.82 -0.23 8.32 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -42.00 365.51 -9.15 -51.15 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.15 Total: 2.68 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.16 Total: -6.19 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.03 Total: -57.32 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.22 Total: -40.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 27.56 SS G_CDS: -0.39 Total: 27.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -42.00 -9.15 -51.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499952157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.418 kcal (2) G-P(sol) polarization free energy of solvation -42.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds